Rh6AG216300

RimP N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015334
Physical Location & Seq
Forward (+)
38747560 .. 38750303
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG216300.1

Sequence Viewer

Length: 954 bp
ATGGAATTAAGCACAGCATGGAATTCCAGAGCCTCTGCTATCTCATTTGCACCACTCATCACTCCCAATACTTGCGGTAGCTCTCACTTCCAACACCCTTCTCTCCCACCTCAAAGCCTTTCTTTCCCATTTTGCCCGTACCCATTTCGCTTTGTTCCCAGCAAGTCCCTAACACTGCAGGCTCGCAAGCGAAACTCGGAGCCTGAGCAGCAGCCACTTGTCAGCCCAACCATTATTGAAGAGGTTTCAGAGGATGATGAAGACGACGACGACGTTTTCTTGGATGACTTTGATGACGAGGCATCAGTGGACGATGATTATTATGGGGATGAGTCTGCGGCGGATGAGGCTGAACTGTATGATGGAGATGGAGGCGGAGGAGGTGGAATTTCACTTGCGGGGACATGGTGGGATGAAAAGGCATTGGGAATAGCTGAGGAAGTTATTCTGACCTTTGAGGGTGACTTGAAAATATATGCCTTTAAAACATTGCCAAATTTCAACATTCAAGTGCGCATTGAGAAGCTTTCGAATAAATCTGGCTCCCCAAGTATGGAAGACATAGAAGCTTTTTCTAGAACCTATAGAACAAGACTGGACGAAGCAGAGCTTGCTCGATCAGTACCTGAGAATTTATGTCTTGAGGTGTCATCTCCAGGTGTAGAAAGGGTAGTTCGGATTCCACAAGATTTGGATCGGTATAAAGATCGACCTATGTATGTAAAATATGTAACTGAGACGGATGCAACTGGTTCACTATCAGAAAGTGATGGTGTTTTCAGGCTTGTTTCTTTCGATATGGAAACAAAATGTTGCATCTGGGGTGTAGCTGACGTGAGGATTAATAGAGAAAAAGCAGGAAAAGGGAGACCACTTAACAAAAAGCAGCGGGAGTGGCGATTGAATACACCCTTTGATTCCTTACGTTTAGTCCGGTTGTATTCTGATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

317

Amino Acids

35.64

Weight (kDa)

4.5

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RimP_N PF02576 167 - 222 9e-06 RimP N-terminal domain
DUF7912 PF25498 224 - 314 1.1e-38 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77122
fragaria_vesca FvH4_2g14620
malus_domestica MD05G1016000.v1.1
prunus_persica Prupe.8G019400_v2.0.a1
pyrus_communis pycom05g00880
rosa_chinensis RchiOBHm_Chr6g0277091
rosa_laevigata RLG00000013334
rosa_roxburghii Rroxscaffold_7G00191620
rosa_rugosa Rorug06G0106300
rosa_samantha Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana Rw6G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 515
AciI CCGC 6 cut(s) 75, 338, 341, 375, 398, 889
AclWI GGATC 1 cut(s) 702
AcsI RAATTY 4 cut(s) 22, 387, 496, 631
AfaI GTAC 2 cut(s) 140, 624
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 5 cut(s) 239, 469, 502, 509, 904
AjiI CACGTC 1 cut(s) 835
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 6 cut(s) 81, 434, 526, 569, 610, 830
AluI AGCT 6 cut(s) 81, 434, 526, 569, 610, 830
Alw26I GTCTC 2 cut(s) 731, 862
AlwI GGATC 1 cut(s) 702
AlwNI CAGNNNCTG 1 cut(s) 626
ApeKI GCWGC 3 cut(s) 208, 211, 886
ApoI RAATTY 4 cut(s) 22, 387, 496, 631
AseI ATTAAT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 473
AsuII TTCGAA 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 267, 564
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 220, 223, 898
BccI CCATC 3 cut(s) 356, 362, 764
BciT130I CCWGG 1 cut(s) 657
BcoDI GTCTC 2 cut(s) 731, 862
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 2 cut(s) 176, 583
BisI GCNGC 4 cut(s) 209, 212, 339, 887
BlsI GCNGC 4 cut(s) 210, 213, 340, 888
Bme1390I CCNGG 1 cut(s) 657
BmgBI CACGTC 1 cut(s) 835
BmiI GGNNCC 2 cut(s) 201, 544
BmrFI CCNGG 1 cut(s) 657
BmsI GCATC 3 cut(s) 311, 733, 825
BpiI GAAGAC 2 cut(s) 267, 564
BpmI CTGGAG 1 cut(s) 639
Bpu10I CCTNAGC 2 cut(s) 204, 435
Bpu14I TTCGAA 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 862
BsaWI WCCGGW 1 cut(s) 933
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 2 cut(s) 600, 754
Bse3DI GCAATG 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 657
BseGI GGATG 6 cut(s) 259, 289, 334, 349, 418, 748
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 4 cut(s) 195, 426, 618, 726
BseNI ACTGG 2 cut(s) 600, 754
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 3 cut(s) 220, 223, 898
BseYI CCCAGC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 934
BslFI GGGAC 2 cut(s) 151, 415
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 2 cut(s) 731, 862
BsmBI CGTCTC 1 cut(s) 731
BsmFI GGGAC 2 cut(s) 151, 415
Bso31I GGTCTC 1 cut(s) 862
Bsp119I TTCGAA 1 cut(s) 530
Bsp143I GATC 3 cut(s) 617, 694, 706
BspACI CCGC 6 cut(s) 75, 338, 341, 375, 398, 889
BspCNI CTCAG 4 cut(s) 196, 427, 619, 727
BspLI GGNNCC 2 cut(s) 201, 544
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 1 cut(s) 702
BspT104I TTCGAA 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 862
BsrDI GCAATG 1 cut(s) 488
BsrI ACTGG 2 cut(s) 600, 754
BssMI GATC 3 cut(s) 617, 694, 706
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 4 cut(s) 180, 184, 188, 612
BstDEI CTNAG 4 cut(s) 204, 435, 627, 735
BstF5I GGATG 6 cut(s) 259, 289, 334, 349, 418, 748
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 3 cut(s) 620, 697, 709
BstMAI GTCTC 2 cut(s) 731, 862
BstMBI GATC 3 cut(s) 617, 694, 706
BstMWI GCNNNNNNNGC 4 cut(s) 208, 347, 611, 895
BstNI CCWGG 1 cut(s) 657
BstSCI CCNGG 1 cut(s) 655
BstSFI CTRYAG 2 cut(s) 176, 583
BstV1I GCAGC 3 cut(s) 220, 223, 898
BstV2I GAAGAC 2 cut(s) 267, 564
BtrI CACGTC 1 cut(s) 835
BtsCI GGATG 6 cut(s) 259, 289, 334, 349, 418, 748
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 2 cut(s) 173, 312
Cac8I GCNNGC 4 cut(s) 180, 184, 188, 612
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 1 cut(s) 516
Csp6I GTAC 2 cut(s) 139, 623
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 2 cut(s) 18, 405
CviQI GTAC 2 cut(s) 139, 623
DdeI CTNAG 4 cut(s) 204, 435, 627, 735
DpnI GATC 3 cut(s) 619, 696, 708
DpnII GATC 3 cut(s) 617, 694, 706
DraI TTTAAA 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EciI GGCGGA 2 cut(s) 356, 390
Eco31I GGTCTC 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 2 cut(s) 21, 408
FalI AAGNNNNNCTT 4 cut(s) 106, 138, 594, 626
FaqI GGGAC 2 cut(s) 151, 415
FatI CATG 2 cut(s) 17, 404
FauI CCCGC 2 cut(s) 391, 882
Fnu4HI GCNGC 4 cut(s) 209, 212, 339, 887
FokI GGATG 6 cut(s) 266, 296, 341, 356, 425, 755
Fsp4HI GCNGC 4 cut(s) 209, 212, 339, 887
FspAI RTGCGCAY 1 cut(s) 515
FspBI CTAG 1 cut(s) 576
FspI TGCGCA 1 cut(s) 515
GlaI GCGC 1 cut(s) 515
GluI GCNGC 4 cut(s) 209, 212, 339, 887
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 639
HapII CCGG 1 cut(s) 934
HhaI GCGC 1 cut(s) 516
Hin1II CATG 2 cut(s) 21, 408
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HindIII AAGCTT 2 cut(s) 524, 567
HinfI GANTC 3 cut(s) 332, 679, 917
HpaII CCGG 1 cut(s) 934
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 2 cut(s) 310, 755
Hpy188I TCNGA 6 cut(s) 199, 250, 450, 678, 763, 946
Hpy188III TCNNGA 3 cut(s) 27, 576, 641
Hpy8I GTNNAC 2 cut(s) 310, 755
Hpy99I CGWCG 3 cut(s) 269, 272, 275
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 3 cut(s) 273, 834, 925
HpyCH4V TGCA 4 cut(s) 50, 178, 746, 816
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 347, 611, 895
HpyF3I CTNAG 4 cut(s) 204, 435, 627, 735
HpySE526I ACGT 3 cut(s) 273, 834, 925
Hsp92II CATG 2 cut(s) 21, 408
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 617, 694, 706
LmnI GCTCC 2 cut(s) 199, 548
Lsp1109I GCAGC 3 cut(s) 220, 223, 898
LweI GCATC 3 cut(s) 311, 733, 825
MaeI CTAG 1 cut(s) 576
MaeII ACGT 3 cut(s) 273, 834, 925
MaeIII GTNAC 2 cut(s) 461, 730
MalI GATC 3 cut(s) 619, 696, 708
MboI GATC 3 cut(s) 617, 694, 706
MboII GAAGA 3 cut(s) 251, 272, 569
MluCI AATT 5 cut(s) 5, 22, 387, 496, 631
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 5 cut(s) 8, 483, 843, 876, 952
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 889
MspI CCGG 1 cut(s) 934
MspR9I CCNGG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 657
MwoI GCNNNNNNNGC 4 cut(s) 208, 347, 611, 895
NdeII GATC 3 cut(s) 617, 694, 706
NlaIII CATG 2 cut(s) 21, 408
NlaIV GGNNCC 2 cut(s) 201, 544
NmuCI GTSAC 1 cut(s) 461
NsbI TGCGCA 1 cut(s) 515
NspV TTCGAA 1 cut(s) 530
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 679, 917
PkrI GCNGC 4 cut(s) 210, 213, 340, 888
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PshBI ATTAAT 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 655
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 2 cut(s) 201, 544
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 626
RsaI GTAC 2 cut(s) 140, 624
RsaNI GTAC 2 cut(s) 139, 623
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 5 cut(s) 8, 483, 843, 876, 952
SatI GCNGC 4 cut(s) 209, 212, 339, 887
Sau3AI GATC 3 cut(s) 617, 694, 706
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 657
SfaNI GCATC 3 cut(s) 311, 733, 825
SfcI CTRYAG 2 cut(s) 176, 583
SfuI TTCGAA 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 5 cut(s) 5, 22, 387, 496, 631
SsiI CCGC 6 cut(s) 75, 338, 341, 375, 398, 889
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 1 cut(s) 655
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 3 cut(s) 276, 837, 928
TaqI TCGA 4 cut(s) 530, 616, 709, 795
TasI AATT 5 cut(s) 5, 22, 387, 496, 631
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 2 cut(s) 679, 917
Tru1I TTAA 5 cut(s) 8, 483, 843, 876, 952
Tru9I TTAA 5 cut(s) 8, 483, 843, 876, 952
TscAI CASTG 2 cut(s) 180, 312
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 3 cut(s) 208, 211, 886
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 273, 429
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 2 cut(s) 180, 312
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 4 cut(s) 22, 387, 496, 631
XbaI TCTAGA 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.