RLG00000013334

RimP N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015334
Physical Location & Seq
Reverse (-)
29981630 .. 29984736
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013334

Sequence Viewer

Length: 957 bp
ATGGAATTATTAAGCACAGCATGGAATTCCAGAGCCTCTGCTATCTCATTTGCACCACTCATCACTCCCAATACTTGCACTACCTCTCACTTCCAACACCCTTCTCTCCCACCTCACAAGCTTTCTTTCCCATTTTGCCCGTACCCATTTCGCTTTGTTCCCAGCAAGTCCCTAACACTGCAGGCTCGCAAGCGAAACTCAGAGCCTGAGCAGCAGCCACTTGTCAGCCCAACCATTATTGAAGAGGTTTCAGAGGATGACGAAGACGACGACGACGACGACGACGTTATCTTGGATGATGAGGCATCAATGGATGATGATTATTATGGGGATGAGTCTGCGGCGGATGAGGCTGAACTGTATGATGGAGATGGAGGCGGAGGAGGTGGAATTTCACTTGCAGGGACATGGTGGGATGAAAAGGCATTGGGAATAGCTGAGGAAGTTATTCTGACCTTTGAGGGTGACTTGAAAATATATGCCTTTAAAACATTGCCAAATTTCAACATTCAAGTGCGCATTGAGAAGCTTTCGAATAAATCTGGCTCCCCAAGTATGGAAGACATAGAAGCTTTTTCTAGAACCTATAGAACAAGACTGCACGAAGCAGAGCTTGCTCGATCAGTACCTGAGAATTTATGTCTTGAGGTGTCATCTCCAGGTGTAGAAAGGGTAGTTCGGATTCCACAAGATTTGGATCGGTATAAAGATCGACCTATGTATGTAAAATATGTAACTGAGACGGATGCAACTGGTTCATTATCAGAAAGTGACGGTGTTTTCAGGCTTGTTTCTTTCGATATGGAAACAAAATGTTGCATCTGGGGTGTAGCAGACGTGAGGATTAATAGAGAAAAAGCAGGAAAAGGGAGACCACTTAACAAAAAGCAGCGGGAGTGGCGATTGAATACACCCTTTGATTCCTTACGTTTAGTCCGGTTGTATTCTGATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

319

Amino Acids

35.85

Weight (kDa)

4.6

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 225 - 315 1.1e-38 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77122
fragaria_vesca FvH4_2g14620
malus_domestica MD05G1016000.v1.1
prunus_persica Prupe.8G019400_v2.0.a1
pyrus_communis pycom05g00880
rosa_chinensis RchiOBHm_Chr6g0277091
rosa_laevigata RLG00000013334
rosa_roxburghii Rroxscaffold_7G00191620
rosa_rugosa Rorug06G0106300
rosa_samantha Rh6AG216300 Rh6BG220900 Rh6CG213700 Rh6CG213900 Rh6CG223700 Rh6DG213300
rosa_wichuraiana Rw6G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 518
AciI CCGC 4 cut(s) 341, 344, 378, 892
AclWI GGATC 1 cut(s) 705
AcsI RAATTY 4 cut(s) 25, 390, 499, 634
AfaI GTAC 2 cut(s) 143, 627
AfiI CCNNNNNNNGG 1 cut(s) 556
AgsI TTSAA 5 cut(s) 242, 472, 505, 512, 907
AjiI CACGTC 1 cut(s) 838
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 5 cut(s) 121, 437, 529, 572, 613
AluI AGCT 5 cut(s) 121, 437, 529, 572, 613
Alw26I GTCTC 2 cut(s) 734, 865
AlwI GGATC 1 cut(s) 705
AlwNI CAGNNNCTG 2 cut(s) 206, 629
ApeKI GCWGC 3 cut(s) 211, 214, 889
ApoI RAATTY 4 cut(s) 25, 390, 499, 634
AseI ATTAAT 1 cut(s) 846
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 519
AsuHPI GGTGA 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 533
BbsI GAAGAC 2 cut(s) 270, 567
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 3 cut(s) 223, 226, 901
BccI CCATC 2 cut(s) 359, 365
BciT130I CCWGG 1 cut(s) 660
BcoDI GTCTC 2 cut(s) 734, 865
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 2 cut(s) 179, 586
BisI GCNGC 4 cut(s) 212, 215, 342, 890
BlsI GCNGC 4 cut(s) 213, 216, 343, 891
Bme1390I CCNGG 1 cut(s) 660
BmgBI CACGTC 1 cut(s) 838
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 1 cut(s) 660
BmsI GCATC 3 cut(s) 314, 736, 828
BpiI GAAGAC 2 cut(s) 270, 567
BpmI CTGGAG 1 cut(s) 642
Bpu10I CCTNAGC 2 cut(s) 207, 438
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 665
BsaBI GATNNNNATC 1 cut(s) 696
BsaI GGTCTC 1 cut(s) 865
BsaWI WCCGGW 1 cut(s) 936
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse1I ACTGG 1 cut(s) 757
Bse3DI GCAATG 1 cut(s) 491
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 1 cut(s) 660
BseGI GGATG 7 cut(s) 262, 301, 319, 337, 352, 421, 751
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 5 cut(s) 198, 213, 429, 621, 729
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 3 cut(s) 223, 226, 901
BseYI CCCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 584
BsiSI CCGG 1 cut(s) 937
BslFI GGGAC 2 cut(s) 154, 418
BslI CCNNNNNNNGG 1 cut(s) 556
BsmAI GTCTC 2 cut(s) 734, 865
BsmBI CGTCTC 1 cut(s) 734
BsmFI GGGAC 2 cut(s) 154, 418
Bso31I GGTCTC 1 cut(s) 865
Bsp119I TTCGAA 1 cut(s) 533
Bsp143I GATC 3 cut(s) 620, 697, 709
BspACI CCGC 4 cut(s) 341, 344, 378, 892
BspCNI CTCAG 5 cut(s) 199, 212, 430, 622, 730
BspLI GGNNCC 1 cut(s) 547
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 705
BspT104I TTCGAA 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 1 cut(s) 757
BssMI GATC 3 cut(s) 620, 697, 709
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 2 cut(s) 360, 776
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 183, 187, 191, 615
BstDEI CTNAG 5 cut(s) 199, 207, 438, 630, 738
BstF5I GGATG 7 cut(s) 262, 301, 319, 337, 352, 421, 751
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 3 cut(s) 623, 700, 712
BstMAI GTCTC 2 cut(s) 734, 865
BstMBI GATC 3 cut(s) 620, 697, 709
BstMWI GCNNNNNNNGC 4 cut(s) 211, 350, 614, 898
BstNI CCWGG 1 cut(s) 660
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 2 cut(s) 179, 586
BstV1I GCAGC 3 cut(s) 223, 226, 901
BstV2I GAAGAC 2 cut(s) 270, 567
BtrI CACGTC 1 cut(s) 838
BtsCI GGATG 7 cut(s) 262, 301, 319, 337, 352, 421, 751
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 4 cut(s) 183, 187, 191, 615
CaiI CAGNNNCTG 2 cut(s) 206, 629
CfoI GCGC 1 cut(s) 519
Csp6I GTAC 2 cut(s) 142, 626
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 2 cut(s) 21, 408
CviQI GTAC 2 cut(s) 142, 626
DdeI CTNAG 5 cut(s) 199, 207, 438, 630, 738
DpnI GATC 3 cut(s) 622, 699, 711
DpnII GATC 3 cut(s) 620, 697, 709
DraI TTTAAA 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 2 cut(s) 359, 393
Eco31I GGTCTC 1 cut(s) 865
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 734
FaeI CATG 2 cut(s) 24, 411
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 2 cut(s) 154, 418
FatI CATG 2 cut(s) 20, 407
FauI CCCGC 1 cut(s) 885
Fnu4HI GCNGC 4 cut(s) 212, 215, 342, 890
FokI GGATG 7 cut(s) 269, 308, 326, 344, 359, 428, 758
Fsp4HI GCNGC 4 cut(s) 212, 215, 342, 890
FspAI RTGCGCAY 1 cut(s) 518
FspBI CTAG 1 cut(s) 579
FspI TGCGCA 1 cut(s) 518
GlaI GCGC 1 cut(s) 518
GluI GCNGC 4 cut(s) 212, 215, 342, 890
GsaI CCCAGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 642
HapII CCGG 1 cut(s) 937
HhaI GCGC 1 cut(s) 519
Hin1II CATG 2 cut(s) 24, 411
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HindIII AAGCTT 3 cut(s) 119, 527, 570
HinfI GANTC 3 cut(s) 335, 682, 920
HpaII CCGG 1 cut(s) 937
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 6 cut(s) 202, 253, 453, 681, 766, 949
Hpy188III TCNNGA 3 cut(s) 30, 579, 644
Hpy99I CGWCG 6 cut(s) 272, 275, 278, 281, 284, 287
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 360, 776
HpyCH4IV ACGT 3 cut(s) 285, 837, 928
HpyCH4V TGCA 7 cut(s) 53, 78, 181, 401, 601, 749, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 211, 350, 614, 898
HpyF3I CTNAG 5 cut(s) 199, 207, 438, 630, 738
HpySE526I ACGT 3 cut(s) 285, 837, 928
Hsp92II CATG 2 cut(s) 24, 411
HspAI GCGC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 620, 697, 709
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 3 cut(s) 223, 226, 901
LweI GCATC 3 cut(s) 314, 736, 828
MaeI CTAG 1 cut(s) 579
MaeII ACGT 3 cut(s) 285, 837, 928
MaeIII GTNAC 3 cut(s) 464, 733, 770
MalI GATC 3 cut(s) 622, 699, 711
MboI GATC 3 cut(s) 620, 697, 709
MboII GAAGA 3 cut(s) 254, 275, 572
MluCI AATT 5 cut(s) 5, 25, 390, 499, 634
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 5 cut(s) 11, 486, 846, 879, 955
MslI CAYNNNNRTG 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 892
MspI CCGG 1 cut(s) 937
MspR9I CCNGG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 4 cut(s) 211, 350, 614, 898
NdeII GATC 3 cut(s) 620, 697, 709
NlaIII CATG 2 cut(s) 24, 411
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 464, 770
NsbI TGCGCA 1 cut(s) 518
NspV TTCGAA 1 cut(s) 533
PcsI WCGNNNNNNNCGW 5 cut(s) 267, 273, 276, 279, 282
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 682, 920
PkrI GCNGC 4 cut(s) 213, 216, 343, 891
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 658
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 1 cut(s) 547
PstI CTGCAG 1 cut(s) 183
PstNI CAGNNNCTG 2 cut(s) 206, 629
RsaI GTAC 2 cut(s) 143, 627
RsaNI GTAC 2 cut(s) 142, 626
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 5 cut(s) 11, 486, 846, 879, 955
SatI GCNGC 4 cut(s) 212, 215, 342, 890
Sau3AI GATC 3 cut(s) 620, 697, 709
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 660
SfaNI GCATC 3 cut(s) 314, 736, 828
SfcI CTRYAG 2 cut(s) 179, 586
SfuI TTCGAA 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 5 cut(s) 5, 25, 390, 499, 634
SsiI CCGC 4 cut(s) 341, 344, 378, 892
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 2 cut(s) 360, 776
TaiI ACGT 3 cut(s) 288, 840, 931
TaqI TCGA 4 cut(s) 533, 619, 712, 798
TasI AATT 5 cut(s) 5, 25, 390, 499, 634
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 682, 920
Tru1I TTAA 5 cut(s) 11, 486, 846, 879, 955
Tru9I TTAA 5 cut(s) 11, 486, 846, 879, 955
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 2 cut(s) 464, 770
TseI GCWGC 3 cut(s) 211, 214, 889
Tsp45I GTSAC 2 cut(s) 464, 770
TspDTI ATGAA 2 cut(s) 432, 747
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 1 cut(s) 183
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 4 cut(s) 25, 390, 499, 634
XbaI TCTAGA 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.