3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77680 |
| fragaria_vesca | FvH4_2g26510 |
| malus_domestica | MD08G1168200.v1.1 MD15G1353600.v1.1 |
| prunus_persica | Prupe.1G501900_v2.0.a1 Prupe.1G501900_v2.0.a1 Prupe.1G501900_v2.0.a1 Prupe.1G501900_v2.0.a1 Prupe.1G501900_v2.0.a1 Prupe.1G501900_v2.0.a1 |
| pyrus_communis | pycom08g14370 pycom15g31690 pycom15g31710 |
| rosa_chinensis | RchiOBHm_Chr6g0295321 |
| rosa_laevigata | RLG00000011813 |
| rosa_multiflora | Rmu_sc0012530.1_g000002 Rmu_sc0016917.1_g000001 |
| rosa_roxburghii | Rroxscaffold_171G00441480 Rroxscaffold_7G00172580 |
| rosa_rugosa | Rorug06G0250000 |
| rosa_samantha | Rh6AG363200 Rh6BG371300 Rh6CG377800 Rh6DG363900 |
| rosa_wichuraiana | Rw6G031690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 2427 |
| AccB1I | GGYRCC | 1 cut(s) | 2427 |
| AccBSI | CCGCTC | 2 cut(s) | 646, 3127 |
| AccI | GTMKAC | 1 cut(s) | 1236 |
| AccIII | TCCGGA | 1 cut(s) | 2130 |
| AciI | CCGC | 7 cut(s) | 263, 644, 908, 924, 1518, 3050, 3125 |
| AclI | AACGTT | 1 cut(s) | 2876 |
| AclWI | GGATC | 9 cut(s) | 356, 635, 648, 1049, 1190, 1203, 1375, 1873, 2779 |
| AcoI | YGGCCR | 3 cut(s) | 1288, 1759, 2221 |
| AcsI | RAATTY | 5 cut(s) | 1189, 1969, 2044, 2168, 2344 |
| AcuI | CTGAAG | 4 cut(s) | 345, 720, 2213, 2744 |
| AcvI | CACGTG | 1 cut(s) | 1388 |
| AfaI | GTAC | 4 cut(s) | 108, 1404, 1765, 2429 |
| AfeI | AGCGCT | 2 cut(s) | 507, 688 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1929, 2230 |
| AflIII | ACRYGT | 3 cut(s) | 124, 1387, 2024 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3010 |
| AhlI | ACTAGT | 1 cut(s) | 1376 |
| AjiI | CACGTC | 1 cut(s) | 2025 |
| AjnI | CCWGG | 5 cut(s) | 290, 385, 1162, 1363, 1684 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 697, 729 |
| Alw26I | GTCTC | 8 cut(s) | 196, 387, 462, 1077, 1086, 1434, 1558, 1568 |
| AlwI | GGATC | 9 cut(s) | 356, 635, 648, 1049, 1190, 1203, 1375, 1873, 2779 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1577, 1691, 2090 |
| Ama87I | CYCGRG | 1 cut(s) | 1205 |
| Aor13HI | TCCGGA | 1 cut(s) | 2130 |
| Aor51HI | AGCGCT | 2 cut(s) | 507, 688 |
| AoxI | GGCC | 7 cut(s) | 68, 656, 1288, 1759, 1850, 2221, 3021 |
| ApoI | RAATTY | 5 cut(s) | 1189, 1969, 2044, 2168, 2344 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2261, 2293 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 405, 1416, 2038 |
| Asp718I | GGTACC | 1 cut(s) | 2427 |
| AspA2I | CCTAGG | 2 cut(s) | 365, 1124 |
| AspLEI | GCGC | 2 cut(s) | 508, 689 |
| AspS9I | GGNCC | 2 cut(s) | 657, 3122 |
| AsuC2I | CCSGG | 1 cut(s) | 1515 |
| AsuHPI | GGTGA | 9 cut(s) | 312, 410, 503, 529, 629, 2438, 2524, 2965, 3006 |
| AsuII | TTCGAA | 2 cut(s) | 1973, 2042 |
| AsuNHI | GCTAGC | 1 cut(s) | 2117 |
| AvaI | CYCGRG | 1 cut(s) | 1205 |
| AvaII | GGWCC | 1 cut(s) | 3122 |
| AvrII | CCTAGG | 2 cut(s) | 365, 1124 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 612, 645 |
| BalI | TGGCCA | 1 cut(s) | 2223 |
| BamHI | GGATCC | 2 cut(s) | 640, 1195 |
| BanI | GGYRCC | 1 cut(s) | 2427 |
| BbrPI | CACGTG | 1 cut(s) | 1388 |
| BbsI | GAAGAC | 1 cut(s) | 1373 |
| BbvCI | CCTCAGC | 2 cut(s) | 2091, 2475 |
| BccI | CCATC | 9 cut(s) | 137, 551, 776, 862, 1026, 1466, 1814, 3074, 3113 |
| BceAI | ACGGC | 2 cut(s) | 1746, 3008 |
| BciT130I | CCWGG | 5 cut(s) | 292, 387, 1164, 1365, 1686 |
| BcnI | CCSGG | 1 cut(s) | 1515 |
| BcoDI | GTCTC | 8 cut(s) | 196, 387, 462, 1077, 1086, 1434, 1558, 1568 |
| BcuI | ACTAGT | 1 cut(s) | 1376 |
| BfaI | CTAG | 9 cut(s) | 366, 1125, 1377, 2031, 2118, 2321, 2384, 2754, 2861 |
| BfmI | CTRYAG | 4 cut(s) | 567, 1116, 1263, 1476 |
| BfoI | RGCGCY | 2 cut(s) | 509, 690 |
| BglII | AGATCT | 3 cut(s) | 296, 1432, 1480 |
| BlnI | CCTAGG | 2 cut(s) | 365, 1124 |
| BlpI | GCTNAGC | 1 cut(s) | 693 |
| Bme1390I | CCNGG | 6 cut(s) | 292, 387, 1164, 1365, 1515, 1686 |
| Bme18I | GGWCC | 1 cut(s) | 3122 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3010 |
| BmeT110I | CYCGRG | 1 cut(s) | 1205 |
| BmgBI | CACGTC | 1 cut(s) | 2025 |
| BmgT120I | GGNCC | 2 cut(s) | 657, 3122 |
| BmiI | GGNNCC | 5 cut(s) | 424, 642, 1197, 1308, 2429 |
| BmrFI | CCNGG | 6 cut(s) | 292, 387, 1164, 1365, 1515, 1686 |
| BmrI | ACTGGG | 3 cut(s) | 837, 1249, 2349 |
| BmtI | GCTAGC | 1 cut(s) | 2121 |
| BmuI | ACTGGG | 3 cut(s) | 837, 1249, 2349 |
| BpiI | GAAGAC | 1 cut(s) | 1373 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2471, 2503, 3129, 3161 |
| BpmI | CTGGAG | 2 cut(s) | 1347, 1985 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2091, 2475 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 693 |
| Bpu14I | TTCGAA | 2 cut(s) | 1973, 2042 |
| BpuEI | CTTGAG | 5 cut(s) | 1205, 1791, 2088, 2246, 2489 |
| BpuMI | CCSGG | 1 cut(s) | 1515 |
| Bsa29I | ATCGAT | 1 cut(s) | 555 |
| BsaAI | YACGTR | 1 cut(s) | 1388 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1200 |
| BsaI | GGTCTC | 3 cut(s) | 196, 462, 1434 |
| BsaJI | CCNNGG | 5 cut(s) | 290, 365, 1124, 1291, 1394 |
| BsaWI | WCCGGW | 1 cut(s) | 2130 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 122, 152, 2512, 2542 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1929, 2230 |
| Bse118I | RCCGGY | 1 cut(s) | 2534 |
| Bse1I | ACTGG | 9 cut(s) | 458, 843, 864, 964, 1244, 1611, 2257, 2344, 2861 |
| Bse3DI | GCAATG | 4 cut(s) | 541, 1542, 2123, 2662 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1200 |
| BseAI | TCCGGA | 1 cut(s) | 2130 |
| BseBI | CCWGG | 5 cut(s) | 292, 387, 1164, 1365, 1686 |
| BseCI | ATCGAT | 1 cut(s) | 555 |
| BseDI | CCNNGG | 5 cut(s) | 290, 365, 1124, 1291, 1394 |
| BseGI | GGATG | 8 cut(s) | 927, 1037, 1096, 1744, 2137, 2272, 2538, 3066 |
| BseJI | GATNNNNATC | 1 cut(s) | 1200 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1929, 2230 |
| BseMI | GCAATG | 4 cut(s) | 541, 1542, 2123, 2662 |
| BseMII | CTCAG | 9 cut(s) | 86, 117, 1325, 1427, 2082, 2286, 2355, 2466, 3000 |
| BseNI | ACTGG | 9 cut(s) | 458, 843, 864, 964, 1244, 1611, 2257, 2344, 2861 |
| BseRI | GAGGAG | 5 cut(s) | 146, 1065, 2072, 2406, 2492 |
| BsgI | GTGCAG | 2 cut(s) | 2320, 2871 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1778 |
| BshFI | GGCC | 7 cut(s) | 70, 658, 1290, 1761, 1852, 2223, 3023 |
| BshNI | GGYRCC | 1 cut(s) | 2427 |
| BshVI | ATCGAT | 1 cut(s) | 555 |
| BsiEI | CGRYCG | 1 cut(s) | 1778 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1205 |
| BsiSI | CCGG | 3 cut(s) | 1515, 2131, 2535 |
| BslFI | GGGAC | 4 cut(s) | 548, 699, 1130, 2385 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1929, 2230 |
| BsmAI | GTCTC | 8 cut(s) | 196, 387, 462, 1077, 1086, 1434, 1558, 1568 |
| BsmFI | GGGAC | 4 cut(s) | 548, 699, 1130, 2385 |
| BsmI | GAATGC | 1 cut(s) | 526 |
| BsnI | GGCC | 7 cut(s) | 70, 658, 1290, 1761, 1852, 2223, 3023 |
| Bso31I | GGTCTC | 3 cut(s) | 196, 462, 1434 |
| BsoBI | CYCGRG | 1 cut(s) | 1205 |
| Bsp119I | TTCGAA | 2 cut(s) | 1973, 2042 |
| Bsp13I | TCCGGA | 1 cut(s) | 2130 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 693 |
| BspACI | CCGC | 7 cut(s) | 263, 644, 908, 924, 1518, 3050, 3125 |
| BspANI | GGCC | 7 cut(s) | 70, 658, 1290, 1761, 1852, 2223, 3023 |
| BspCNI | CTCAG | 9 cut(s) | 85, 116, 1324, 1428, 2083, 2285, 2356, 2467, 3001 |
| BspDI | ATCGAT | 1 cut(s) | 555 |
| BspEI | TCCGGA | 1 cut(s) | 2130 |
| BspLI | GGNNCC | 5 cut(s) | 424, 642, 1197, 1308, 2429 |
| BspMAI | CTGCAG | 1 cut(s) | 1120 |
| BspOI | GCTAGC | 1 cut(s) | 2121 |
| BspPI | GGATC | 9 cut(s) | 356, 635, 648, 1049, 1190, 1203, 1375, 1873, 2779 |
| BspT104I | TTCGAA | 2 cut(s) | 1973, 2042 |
| BspT107I | GGYRCC | 1 cut(s) | 2427 |
| BspTNI | GGTCTC | 3 cut(s) | 196, 462, 1434 |
| BsrBI | CCGCTC | 2 cut(s) | 646, 3127 |
| BsrDI | GCAATG | 4 cut(s) | 541, 1542, 2123, 2662 |
| BsrFI | RCCGGY | 1 cut(s) | 2534 |
| BsrI | ACTGG | 9 cut(s) | 458, 843, 864, 964, 1244, 1611, 2257, 2344, 2861 |
| BssAI | RCCGGY | 1 cut(s) | 2534 |
| BssECI | CCNNGG | 5 cut(s) | 290, 365, 1124, 1291, 1394 |
| BssT1I | CCWWGG | 3 cut(s) | 365, 1124, 1394 |
| Bst2UI | CCWGG | 5 cut(s) | 292, 387, 1164, 1365, 1686 |
| Bst6I | CTCTTC | 5 cut(s) | 53, 451, 1407, 2424, 2908 |
| BstBAI | YACGTR | 1 cut(s) | 1388 |
| BstBI | TTCGAA | 2 cut(s) | 1973, 2042 |
| BstF5I | GGATG | 8 cut(s) | 927, 1037, 1096, 1744, 2137, 2272, 2538, 3066 |
| BstH2I | RGCGCY | 2 cut(s) | 509, 690 |
| BstHHI | GCGC | 2 cut(s) | 508, 689 |
| BstMAI | GTCTC | 8 cut(s) | 196, 387, 462, 1077, 1086, 1434, 1558, 1568 |
| BstMCI | CGRYCG | 1 cut(s) | 1778 |
| BstNI | CCWGG | 5 cut(s) | 292, 387, 1164, 1365, 1686 |
| BstNSI | RCATGY | 2 cut(s) | 128, 2697 |
| BstSCI | CCNGG | 6 cut(s) | 290, 385, 1162, 1363, 1513, 1684 |
| BstSFI | CTRYAG | 4 cut(s) | 567, 1116, 1263, 1476 |
| BstV2I | GAAGAC | 1 cut(s) | 1373 |
| BstX2I | RGATCY | 6 cut(s) | 296, 640, 1195, 1432, 1480, 1865 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3091 |
| BstYI | RGATCY | 6 cut(s) | 296, 640, 1195, 1432, 1480, 1865 |
| Bsu15I | ATCGAT | 1 cut(s) | 555 |
| BsuRI | GGCC | 7 cut(s) | 70, 658, 1290, 1761, 1852, 2223, 3023 |
| BsuTUI | ATCGAT | 1 cut(s) | 555 |
| BtrI | CACGTC | 1 cut(s) | 2025 |
| BtsCI | GGATG | 8 cut(s) | 927, 1037, 1096, 1744, 2137, 2272, 2538, 3066 |
| BtsI | GCAGTG | 4 cut(s) | 615, 910, 1303, 2992 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1577, 1691, 2090 |
| CfoI | GCGC | 2 cut(s) | 508, 689 |
| Cfr10I | RCCGGY | 1 cut(s) | 2534 |
| Cfr13I | GGNCC | 2 cut(s) | 657, 3122 |
| ClaI | ATCGAT | 1 cut(s) | 555 |
| CseI | GACGC | 2 cut(s) | 225, 2564 |
| Csp6I | GTAC | 4 cut(s) | 107, 1403, 1764, 2428 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2890, 2925 |
| CviQI | GTAC | 4 cut(s) | 107, 1403, 1764, 2428 |
| DraI | TTTAAA | 2 cut(s) | 502, 1725 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3010 |
| EaeI | YGGCCR | 3 cut(s) | 1288, 1759, 2221 |
| Eam1104I | CTCTTC | 5 cut(s) | 53, 451, 1407, 2424, 2908 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3010 |
| EarI | CTCTTC | 5 cut(s) | 53, 451, 1407, 2424, 2908 |
| Eco130I | CCWWGG | 3 cut(s) | 365, 1124, 1394 |
| Eco147I | AGGCCT | 1 cut(s) | 70 |
| Eco31I | GGTCTC | 3 cut(s) | 196, 462, 1434 |
| Eco47I | GGWCC | 1 cut(s) | 3122 |
| Eco47III | AGCGCT | 2 cut(s) | 507, 688 |
| Eco57I | CTGAAG | 4 cut(s) | 345, 720, 2213, 2744 |
| Eco72I | CACGTG | 1 cut(s) | 1388 |
| Eco88I | CYCGRG | 1 cut(s) | 1205 |
| EcoRI | GAATTC | 1 cut(s) | 1969 |
| EcoRII | CCWGG | 5 cut(s) | 290, 385, 1162, 1363, 1684 |
| EcoT14I | CCWWGG | 3 cut(s) | 365, 1124, 1394 |
| EcoT22I | ATGCAT | 1 cut(s) | 2695 |
| ErhI | CCWWGG | 3 cut(s) | 365, 1124, 1394 |
| FaqI | GGGAC | 4 cut(s) | 548, 699, 1130, 2385 |
| FauNDI | CATATG | 2 cut(s) | 1795, 2011 |
| FblI | GTMKAC | 1 cut(s) | 1236 |
| FokI | GGATG | 8 cut(s) | 914, 1044, 1103, 1751, 2124, 2279, 2525, 3053 |
| FspBI | CTAG | 9 cut(s) | 366, 1125, 1377, 2031, 2118, 2321, 2384, 2754, 2861 |
| GlaI | GCGC | 2 cut(s) | 507, 688 |
| GsuI | CTGGAG | 2 cut(s) | 1347, 1985 |
| HaeII | RGCGCY | 2 cut(s) | 509, 690 |
| HaeIII | GGCC | 7 cut(s) | 70, 658, 1290, 1761, 1852, 2223, 3023 |
| HapII | CCGG | 3 cut(s) | 1515, 2131, 2535 |
| HgaI | GACGC | 2 cut(s) | 225, 2564 |
| HhaI | GCGC | 2 cut(s) | 508, 689 |
| Hin6I | GCGC | 2 cut(s) | 506, 687 |
| HinP1I | GCGC | 2 cut(s) | 506, 687 |
| HincII | GTYRAC | 1 cut(s) | 1608 |
| HindII | GTYRAC | 1 cut(s) | 1608 |
| HindIII | AAGCTT | 6 cut(s) | 477, 495, 1787, 2106, 2702, 2801 |
| HpaII | CCGG | 3 cut(s) | 1515, 2131, 2535 |
| HphI | GGTGA | 9 cut(s) | 312, 410, 503, 529, 629, 2438, 2524, 2965, 3006 |
| Hpy166II | GTNNAC | 8 cut(s) | 1237, 1511, 1540, 1608, 1618, 1676, 2446, 2791 |
| Hpy8I | GTNNAC | 8 cut(s) | 1237, 1511, 1540, 1608, 1618, 1676, 2446, 2791 |
| Hpy99I | CGWCG | 6 cut(s) | 16, 19, 90, 218, 2427, 2888 |
| HpyCH4IV | ACGT | 5 cut(s) | 1387, 1423, 1668, 2024, 2876 |
| HpySE526I | ACGT | 5 cut(s) | 1387, 1423, 1668, 2024, 2876 |
| HspAI | GCGC | 2 cut(s) | 506, 687 |
| Kpn2I | TCCGGA | 1 cut(s) | 2130 |
| KpnI | GGTACC | 1 cut(s) | 2431 |
| LmnI | GCTCC | 5 cut(s) | 821, 1306, 1688, 2133, 3137 |
| MaeI | CTAG | 9 cut(s) | 366, 1125, 1377, 2031, 2118, 2321, 2384, 2754, 2861 |
| MaeII | ACGT | 5 cut(s) | 1387, 1423, 1668, 2024, 2876 |
| MaeIII | GTNAC | 9 cut(s) | 47, 309, 469, 676, 835, 987, 1885, 2020, 3012 |
| MbiI | CCGCTC | 2 cut(s) | 646, 3127 |
| MfeI | CAATTG | 2 cut(s) | 338, 2508 |
| MflI | RGATCY | 6 cut(s) | 296, 640, 1195, 1432, 1480, 1865 |
| MlsI | TGGCCA | 1 cut(s) | 2223 |
| MluNI | TGGCCA | 1 cut(s) | 2223 |
| MlyI | GAGTC | 7 cut(s) | 143, 570, 1261, 1539, 2264, 2965, 3020 |
| MmeI | TCCRAC | 1 cut(s) | 3094 |
| Mox20I | TGGCCA | 1 cut(s) | 2223 |
| Mph1103I | ATGCAT | 1 cut(s) | 2695 |
| MroI | TCCGGA | 1 cut(s) | 2130 |
| MroXI | GAANNNNTTC | 3 cut(s) | 405, 1416, 2038 |
| MscI | TGGCCA | 1 cut(s) | 2223 |
| MseI | TTAA | 6 cut(s) | 501, 633, 1454, 1724, 1928, 2879 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3089 |
| Msp20I | TGGCCA | 1 cut(s) | 2223 |
| MspA1I | CMGCKG | 3 cut(s) | 1108, 1963, 2090 |
| MspI | CCGG | 3 cut(s) | 1515, 2131, 2535 |
| MspR9I | CCNGG | 6 cut(s) | 292, 387, 1164, 1365, 1515, 1686 |
| MunI | CAATTG | 2 cut(s) | 338, 2508 |
| Mva1269I | GAATGC | 1 cut(s) | 526 |
| MvaI | CCWGG | 5 cut(s) | 292, 387, 1164, 1365, 1686 |
| NciI | CCSGG | 1 cut(s) | 1515 |
| NdeI | CATATG | 2 cut(s) | 1795, 2011 |
| NheI | GCTAGC | 1 cut(s) | 2117 |
| NlaIV | GGNNCC | 5 cut(s) | 424, 642, 1197, 1308, 2429 |
| NmeAIII | GCCGAG | 1 cut(s) | 1316 |
| NmuCI | GTSAC | 5 cut(s) | 47, 469, 987, 2020, 3012 |
| NsiI | ATGCAT | 1 cut(s) | 2695 |
| NspI | RCATGY | 2 cut(s) | 128, 2697 |
| NspV | TTCGAA | 2 cut(s) | 1973, 2042 |
| PaeR7I | CTCGAG | 1 cut(s) | 1205 |
| PceI | AGGCCT | 1 cut(s) | 70 |
| PciI | ACATGT | 1 cut(s) | 124 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2835 |
| PctI | GAATGC | 1 cut(s) | 526 |
| PdmI | GAANNNNTTC | 3 cut(s) | 405, 1416, 2038 |
| PfeI | GAWTC | 8 cut(s) | 36, 176, 863, 1001, 1036, 1349, 2234, 2564 |
| PflFI | GACNNNGTC | 1 cut(s) | 2438 |
| PfoI | TCCNGGA | 3 cut(s) | 385, 1363, 1684 |
| PleI | GAGTC | 7 cut(s) | 142, 569, 1260, 1538, 2264, 2964, 3019 |
| PmaCI | CACGTG | 1 cut(s) | 1388 |
| PmlI | CACGTG | 1 cut(s) | 1388 |
| PpsI | GAGTC | 7 cut(s) | 142, 569, 1260, 1538, 2264, 2964, 3019 |
| Ppu21I | YACGTR | 1 cut(s) | 1388 |
| PscI | ACATGT | 1 cut(s) | 124 |
| Psp1406I | AACGTT | 1 cut(s) | 2876 |
| Psp6I | CCWGG | 5 cut(s) | 290, 385, 1162, 1363, 1684 |
| PspCI | CACGTG | 1 cut(s) | 1388 |
| PspGI | CCWGG | 5 cut(s) | 290, 385, 1162, 1363, 1684 |
| PspN4I | GGNNCC | 5 cut(s) | 424, 642, 1197, 1308, 2429 |
| PspPI | GGNCC | 2 cut(s) | 657, 3122 |
| PstI | CTGCAG | 1 cut(s) | 1120 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1577, 1691, 2090 |
| PsuI | RGATCY | 6 cut(s) | 296, 640, 1195, 1432, 1480, 1865 |
| PsyI | GACNNNGTC | 1 cut(s) | 2438 |
| PvuII | CAGCTG | 3 cut(s) | 1108, 1963, 2090 |
| RsaI | GTAC | 4 cut(s) | 108, 1404, 1765, 2429 |
| RsaNI | GTAC | 4 cut(s) | 107, 1403, 1764, 2428 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3089 |
| SaqAI | TTAA | 6 cut(s) | 501, 633, 1454, 1724, 1928, 2879 |
| Sau96I | GGNCC | 2 cut(s) | 657, 3122 |
| SchI | GAGTC | 7 cut(s) | 143, 570, 1261, 1539, 2264, 2965, 3020 |
| ScrFI | CCNGG | 6 cut(s) | 292, 387, 1164, 1365, 1515, 1686 |
| SfcI | CTRYAG | 4 cut(s) | 567, 1116, 1263, 1476 |
| Sfr274I | CTCGAG | 1 cut(s) | 1205 |
| SfuI | TTCGAA | 2 cut(s) | 1973, 2042 |
| SinI | GGWCC | 1 cut(s) | 3122 |
| SlaI | CTCGAG | 1 cut(s) | 1205 |
| SmiI | ATTTAAAT | 1 cut(s) | 1725 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3089 |
| SmlI | CTYRAG | 6 cut(s) | 1184, 1205, 1806, 2103, 2261, 2468 |
| SmoI | CTYRAG | 6 cut(s) | 1184, 1205, 1806, 2103, 2261, 2468 |
| SpeI | ACTAGT | 1 cut(s) | 1376 |
| SseBI | AGGCCT | 1 cut(s) | 70 |
| SsiI | CCGC | 7 cut(s) | 263, 644, 908, 924, 1518, 3050, 3125 |
| SspMI | CTAG | 9 cut(s) | 366, 1125, 1377, 2031, 2118, 2321, 2384, 2754, 2861 |
| StuI | AGGCCT | 1 cut(s) | 70 |
| StyD4I | CCNGG | 6 cut(s) | 290, 385, 1162, 1363, 1513, 1684 |
| StyI | CCWWGG | 3 cut(s) | 365, 1124, 1394 |
| SwaI | ATTTAAAT | 1 cut(s) | 1725 |
| TaiI | ACGT | 5 cut(s) | 1390, 1426, 1671, 2027, 2879 |
| TaqII | GACCGA | 1 cut(s) | 488 |
| TauI | GCSGC | 2 cut(s) | 265, 927 |
| TfiI | GAWTC | 8 cut(s) | 36, 176, 863, 1001, 1036, 1349, 2234, 2564 |
| Tru1I | TTAA | 6 cut(s) | 501, 633, 1454, 1724, 1928, 2879 |
| Tru9I | TTAA | 6 cut(s) | 501, 633, 1454, 1724, 1928, 2879 |
| TseFI | GTSAC | 5 cut(s) | 47, 469, 987, 2020, 3012 |
| Tsp45I | GTSAC | 5 cut(s) | 47, 469, 987, 2020, 3012 |
| TspGWI | ACGGA | 3 cut(s) | 297, 2733, 2830 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2438 |
| VpaK11BI | GGWCC | 1 cut(s) | 3122 |
| XapI | RAATTY | 5 cut(s) | 1189, 1969, 2044, 2168, 2344 |
| XbaI | TCTAGA | 1 cut(s) | 2030 |
| XceI | RCATGY | 2 cut(s) | 128, 2697 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1160, 1392 |
| XhoI | CTCGAG | 1 cut(s) | 1205 |
| XmaJI | CCTAGG | 2 cut(s) | 365, 1124 |
| XmiI | GTMKAC | 1 cut(s) | 1236 |
| XmnI | GAANNNNTTC | 3 cut(s) | 405, 1416, 2038 |
| XspI | CTAG | 9 cut(s) | 366, 1125, 1377, 2031, 2118, 2321, 2384, 2754, 2861 |
| Zsp2I | ATGCAT | 1 cut(s) | 2695 |