Rmu_sc0016917.1_g000001

3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016917.1
OG0007261
Physical Location & Seq
Forward (+)
70 .. 3406
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016917.1_g000001.1.cds

Sequence Viewer

Length: 2631 bp
atgaaaggatctgctggcgcttgtaagagttctgcaccagttgaggatcttaacttaaatctagaagatactgcagttggttgtaactgcaaaggtaaagtcaaggtagatgaggattgtgagtatgatagccgcacaagttatctgcttcctgagagaggatcatgttctgaggaaagcacgtatttgtgtgactctactcattcagagccagtcggacaatcttgttgtgatcatgctgctggaaagtaccaattggcttcagattcttcccaagcaggttcttctagtgagcagaatgtagtgaaaactccagtcgagaggatgtgtgccatcatcagttcattcccttcaaaacgaccaactggaagggttgttgctatcattgagaggtctaaacgtcgagatgctgtcgtaggttttctaaacgttaagaagtggatttcttacagggaattttgcagaaaagacatgaaaaagaacaaaagtttgtcatactctgaccatgagtacatccagatgacaccgactgacccaaggtttccaaaaatggtggtcctcgtgagaaatctgcccgatgcaatcaagaaaagattggagaatggtgatgaaacaattgaaaaggagttgttttctgcacgagttgatgaatggggtgaagaaagtcttgctccacaagccttaatattacatgcttttggacatggaactgaagtacagcctcacattgaagcaatcttatttgaaaatgcgattaattcatctgaattttcccctgaatcactttcttgtcttcctcgtctcccatgggaggtgcctcgggaggaatttcaaactagaaaggatcttcaaaatttgtgcatattcaccattgatccttccactgccaccgatctggatgatgctctctctgttgagaatttttccaacggtatttccagagttggtatccacattactgatgcatcatattttgtgttacccgacacacccttagatgaagaagctcaatctagatcaacaagtgtgtatatgacacatcgcaaaattcctatgttaccctctttgctttcagagaatatcggttcacttaatccaggagcagagagactttcgttttcaattttcttggacctcaataatgctggggatgttgttgatcgatggattggccggactgtgataagatcgtgttgcaagctttcttatgagcatgctcaggatattattgatggcaaatttaactctgaaagttttgacactttcaaagacggttgtcctcagatacatggccaatttgaatggtcggatgtaattagatctgttaagaacctctatgaagtttccaaaactttgaaggagaggaggtttagtgatggtgcccttcagcttgataactccaaagttgttattctgtttgatgaatgtggagatccatatgatagtttgttttccgaaaggaacgaatcaacttctcttgtggaggagtttatgctgttagcaaacagaacagcggctgaagtcatatctagagctttccctaacagtgcactactgcggaggcacccagagcctaatatgcgcaagcttaaagaatttgaagcattttgttccaagcacggtttagagttggatacttcttcttctggtcgtttccatcagtcactggagagaattagggaaaagctcaaggatgattctgttctgttaaatattctcatgaattatgctacaaaacctatgcagctggctacttacttttgtagtggagaattgaaacacaaagaaaatgattggggtcactacggattggctgttcctctgtatactcatttcacatcaccactacggaggtatcctgatattgtagtgcatcgcacactagctgctgctatagaggctgaggagttatatttggaacatcagagattgttgaataacttgaacaagggagaaaaatttaagatgaggtgtttcactggtgttcattttgataaggatgctgccgaatctagggaaagtcaggaagcattattagctgcagcaatgaagcatagagttcccaatacagagttgcttactgatgttgctgctcattgcaatgttagaaagctggccagtagacatgtcaaggatgcttgtgataagctccacatatggtccctgctgaagaaaaaggagattttactctcagaagcaagagtaatgggtctgggacctagattcatgtccatttatatccaaaagcttgctatcgaacgtcgaattaattatgatgaagttgaaggcttgatggtagagtggctagatgctacatccacattggtactttctttaggtactgataggcgcacattcaggagaggcagtcctggtaaatggagggcgcttgaagatgcggcattgattgttagtccttatgacctccaagctgaacctagtccagctggaaagagttcaaatgagcccagctccaatggttgctctttgaatagtgaagttgagcccatggtttttcctcttacagtgcgtcttctttcaacaattcctgtagtacttcatgcagttggtggggatgatggacctattgatattggggcaaggctgtacatgagttcatacctctgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000175 GO:0000178 GO:0000278 GO:0000280 GO:0000287 GO:0000291 GO:0000819 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008285 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0019827 GO:0022402 GO:0022613 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0042127 GO:0042254 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051276 GO:0051304 GO:0051306 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098727 GO:0098813 GO:0140014 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903047 GO:1905354 GO:1990074 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RNB

Protein Analysis

876

Amino Acids

98.4

Weight (kDa)

5.73

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1583
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 3 cut(s) 814, 1379, 1563
AccI GTMKAC 2 cut(s) 1826, 2122
AciI CCGC 4 cut(s) 133, 1514, 1558, 2399
AclI AACGTT 1 cut(s) 429
AclWI GGATC 6 cut(s) 16, 54, 169, 852, 869, 1427
AcoI YGGCCR 3 cut(s) 1171, 1291, 2115
AcsI RAATTY 9 cut(s) 455, 767, 827, 853, 919, 1047, 1238, 1595, 1958
AcuI CTGAAG 5 cut(s) 246, 732, 1370, 1539, 2189
AfaI GTAC 7 cut(s) 251, 512, 717, 2328, 2341, 2556, 2609
AfiI CCNNNNNNNGG 3 cut(s) 158, 811, 2013
AflIII ACRYGT 1 cut(s) 2125
AjnI CCWGG 2 cut(s) 1096, 2371
AloI GAACNNNNNNTCC 2 cut(s) 1800, 1832
Alw21I GWGCWC 1 cut(s) 1552
Alw26I GTCTC 2 cut(s) 806, 1102
Alw44I GTGCAC 1 cut(s) 1548
AlwI GGATC 6 cut(s) 16, 54, 169, 852, 869, 1427
AlwNI CAGNNNCTG 2 cut(s) 1517, 1666
Ama87I CYCGRG 1 cut(s) 819
AoxI GGCC 3 cut(s) 1171, 1291, 2115
ApaLI GTGCAC 1 cut(s) 1548
ApeKI GCWGC 8 cut(s) 239, 1744, 1886, 1889, 2003, 2039, 2042, 2090
ApoI RAATTY 9 cut(s) 455, 767, 827, 853, 919, 1047, 1238, 1595, 1958
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AseI ATTAAT 2 cut(s) 756, 2268
Asp700I GAANNNNTTC 1 cut(s) 2455
AspLEI GCGC 4 cut(s) 20, 1584, 2352, 2389
AspS9I GGNCC 5 cut(s) 556, 1132, 2160, 2216, 2582
AsuHPI GGTGA 4 cut(s) 617, 668, 859, 1833
AvaI CYCGRG 1 cut(s) 819
AvaII GGWCC 5 cut(s) 556, 1132, 2160, 2216, 2582
BaeGI GKGCMC 2 cut(s) 1384, 1552
BaeI ACNNNNGTAYC 4 cut(s) 60, 93, 1838, 1871
BalI TGGCCA 2 cut(s) 1293, 2117
BanI GGYRCC 3 cut(s) 814, 1379, 1563
BanII GRGCYC 2 cut(s) 2469, 2508
BauI CACGAG 2 cut(s) 560, 639
BbsI GAAGAC 2 cut(s) 785, 2525
Bbv12I GWGCWC 1 cut(s) 1552
BbvCI CCTCAGC 1 cut(s) 1902
BbvI GCAGC 8 cut(s) 226, 1756, 1873, 1876, 1990, 2026, 2054, 2077
BccI CCATC 7 cut(s) 341, 1158, 1226, 1370, 1665, 2287, 2573
BciT130I CCWGG 2 cut(s) 1098, 2373
BciVI GTATCC 3 cut(s) 959, 1627, 1866
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 806, 1102
BfmI CTRYAG 4 cut(s) 72, 1893, 2040, 2550
BfoI RGCGCY 2 cut(s) 21, 2390
BfuAI ACCTGC 1 cut(s) 269
BfuI GTATCC 3 cut(s) 959, 1627, 1866
BglII AGATCT 1 cut(s) 1319
BmcAI AGTACT 1 cut(s) 2556
Bme1390I CCNGG 2 cut(s) 1098, 2373
Bme18I GGWCC 5 cut(s) 556, 1132, 2160, 2216, 2582
BmeT110I CYCGRG 1 cut(s) 819
BmgT120I GGNCC 5 cut(s) 556, 1132, 2160, 2216, 2582
BmiI GGNNCC 5 cut(s) 816, 1381, 1565, 2162, 2217
BmrFI CCNGG 2 cut(s) 1098, 2373
BoxI GACNNNNGTC 1 cut(s) 1275
BpiI GAAGAC 2 cut(s) 785, 2525
BplI GAGNNNNNCTC 2 cut(s) 2456, 2488
BpmI CTGGAG 2 cut(s) 297, 1688
Bpu10I CCTNAGC 2 cut(s) 1218, 1902
BpuEI CTTGAG 1 cut(s) 1673
Bsa29I ATCGAT 1 cut(s) 1162
BsaAI YACGTR 1 cut(s) 183
BsaJI CCNNGG 4 cut(s) 536, 806, 818, 2508
BsaXI ACNNNNNCTCC 6 cut(s) 1352, 1357, 1382, 1387, 2353, 2383
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 811, 2013
Bse1I ACTGG 7 cut(s) 38, 212, 314, 370, 1671, 1984, 2118
Bse3DI GCAATG 3 cut(s) 2052, 2095, 2107
BseBI CCWGG 2 cut(s) 1098, 2373
BseCI ATCGAT 1 cut(s) 1162
BseDI CCNNGG 4 cut(s) 536, 806, 818, 2508
BseLI CCNNNNNNNGG 3 cut(s) 158, 811, 2013
BseMI GCAATG 3 cut(s) 2052, 2095, 2107
BseMII CTCAG 6 cut(s) 144, 162, 1232, 1295, 1893, 2205
BseNI ACTGG 7 cut(s) 38, 212, 314, 370, 1671, 1984, 2118
BseRI GAGGAG 3 cut(s) 1378, 1499, 1919
BseSI GKGCMC 2 cut(s) 1384, 1552
BseXI GCAGC 8 cut(s) 226, 1756, 1873, 1876, 1990, 2026, 2054, 2077
BseYI CCCAGC 2 cut(s) 1145, 2468
BsgI GTGCAG 2 cut(s) 18, 621
BshFI GGCC 3 cut(s) 1173, 1293, 2117
BshNI GGYRCC 3 cut(s) 814, 1379, 1563
BshVI ATCGAT 1 cut(s) 1162
BsiHKAI GWGCWC 1 cut(s) 1552
BsiHKCI CYCGRG 1 cut(s) 819
BsiSI CCGG 1 cut(s) 1174
BslFI GGGAC 2 cut(s) 2146, 2229
BslI CCNNNNNNNGG 3 cut(s) 158, 811, 2013
BsmAI GTCTC 2 cut(s) 806, 1102
BsmBI CGTCTC 1 cut(s) 806
BsmFI GGGAC 2 cut(s) 2146, 2229
BsnI GGCC 3 cut(s) 1173, 1293, 2117
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 4 cut(s) 1384, 1552, 2469, 2508
Bsp1407I TGTACA 1 cut(s) 2607
Bsp19I CCATGG 2 cut(s) 806, 2508
BspACI CCGC 4 cut(s) 133, 1514, 1558, 2399
BspANI GGCC 3 cut(s) 1173, 1293, 2117
BspCNI CTCAG 6 cut(s) 145, 163, 1231, 1294, 1894, 2204
BspDI ATCGAT 1 cut(s) 1162
BspHI TCATGA 1 cut(s) 1719
BspLI GGNNCC 5 cut(s) 816, 1381, 1565, 2162, 2217
BspMAI CTGCAG 2 cut(s) 76, 2044
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 6 cut(s) 16, 54, 169, 852, 869, 1427
BspT107I GGYRCC 3 cut(s) 814, 1379, 1563
BsrDI GCAATG 3 cut(s) 2052, 2095, 2107
BsrGI TGTACA 1 cut(s) 2607
BsrI ACTGG 7 cut(s) 38, 212, 314, 370, 1671, 1984, 2118
BssECI CCNNGG 4 cut(s) 536, 806, 818, 2508
BssNAI GTATAC 1 cut(s) 1827
BssSI CACGAG 2 cut(s) 560, 639
BssT1I CCWWGG 3 cut(s) 536, 806, 2508
Bst1107I GTATAC 1 cut(s) 1827
Bst2BI CACGAG 2 cut(s) 560, 639
Bst2UI CCWGG 2 cut(s) 1098, 2373
Bst4CI ACNGT 6 cut(s) 932, 1180, 1274, 1547, 1622, 2527
BstAUI TGTACA 1 cut(s) 2607
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 7 cut(s) 16, 1199, 1215, 1586, 1749, 2115, 2250
BstDEI CTNAG 7 cut(s) 153, 171, 994, 1218, 1281, 1902, 2191
BstDSI CCRYGG 2 cut(s) 806, 2508
BstENI CCTNNNNNAGG 1 cut(s) 156
BstH2I RGCGCY 2 cut(s) 21, 2390
BstHHI GCGC 4 cut(s) 20, 1584, 2352, 2389
BstMAI GTCTC 2 cut(s) 806, 1102
BstMWI GCNNNNNNNGC 5 cut(s) 677, 1570, 1579, 1898, 2036
BstNI CCWGG 2 cut(s) 1098, 2373
BstNSI RCATGY 3 cut(s) 695, 1217, 2129
BstPAI GACNNNNGTC 1 cut(s) 1275
BstSCI CCNGG 2 cut(s) 1096, 2371
BstSFI CTRYAG 4 cut(s) 72, 1893, 2040, 2550
BstSLI GKGCMC 2 cut(s) 1384, 1552
BstV1I GCAGC 8 cut(s) 226, 1756, 1873, 1876, 1990, 2026, 2054, 2077
BstV2I GAAGAC 2 cut(s) 785, 2525
BstX2I RGATCY 5 cut(s) 8, 46, 844, 1319, 1432
BstXI CCANNNNNNTGG 1 cut(s) 895
BstYI RGATCY 5 cut(s) 8, 46, 844, 1319, 1432
BstZ17I GTATAC 1 cut(s) 1827
Bsu15I ATCGAT 1 cut(s) 1162
BsuI GTATCC 3 cut(s) 959, 1627, 1866
BsuRI GGCC 3 cut(s) 1173, 1293, 2117
BsuTUI ATCGAT 1 cut(s) 1162
BtgI CCRYGG 2 cut(s) 806, 2508
BtgZI GCGATG 2 cut(s) 1025, 1859
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 5 cut(s) 882, 1552, 1664, 1977, 2532
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 7 cut(s) 16, 1199, 1215, 1586, 1749, 2115, 2250
CaiI CAGNNNCTG 2 cut(s) 1517, 1666
CciI TCATGA 1 cut(s) 1719
CfoI GCGC 4 cut(s) 20, 1584, 2352, 2389
Cfr13I GGNCC 5 cut(s) 556, 1132, 2160, 2216, 2582
ClaI ATCGAT 1 cut(s) 1162
CseI GACGC 1 cut(s) 2519
Csp6I GTAC 7 cut(s) 250, 511, 716, 2327, 2340, 2555, 2608
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviQI GTAC 7 cut(s) 250, 511, 716, 2327, 2340, 2555, 2608
DdeI CTNAG 7 cut(s) 153, 171, 994, 1218, 1281, 1902, 2191
EaeI YGGCCR 3 cut(s) 1171, 1291, 2115
Eco130I CCWWGG 3 cut(s) 536, 806, 2508
Eco24I GRGCYC 2 cut(s) 2469, 2508
Eco47I GGWCC 5 cut(s) 556, 1132, 2160, 2216, 2582
Eco57I CTGAAG 5 cut(s) 246, 732, 1370, 1539, 2189
Eco88I CYCGRG 1 cut(s) 819
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 2216
EcoRII CCWGG 2 cut(s) 1096, 2371
EcoT14I CCWWGG 3 cut(s) 536, 806, 2508
EcoT22I ATGCAT 1 cut(s) 967
EcoT38I GRGCYC 2 cut(s) 2469, 2508
ErhI CCWWGG 3 cut(s) 536, 806, 2508
Esp3I CGTCTC 1 cut(s) 806
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 2 cut(s) 2146, 2229
FauNDI CATATG 2 cut(s) 1438, 2156
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 2 cut(s) 1826, 2122
FriOI GRGCYC 2 cut(s) 2469, 2508
FspI TGCGCA 1 cut(s) 1583
GlaI GCGC 4 cut(s) 19, 1583, 2351, 2388
GsaI CCCAGC 2 cut(s) 1149, 2472
GsuI CTGGAG 2 cut(s) 297, 1688
HaeII RGCGCY 2 cut(s) 21, 2390
HaeIII GGCC 3 cut(s) 1173, 1293, 2117
HapII CCGG 1 cut(s) 1174
HgaI GACGC 1 cut(s) 2519
HhaI GCGC 4 cut(s) 20, 1584, 2352, 2389
Hin6I GCGC 4 cut(s) 18, 1582, 2350, 2387
HinP1I GCGC 4 cut(s) 18, 1582, 2350, 2387
HindIII AAGCTT 3 cut(s) 1199, 1586, 2246
HinfI GANTC 7 cut(s) 194, 266, 779, 1466, 1697, 2009, 2223
HpaII CCGG 1 cut(s) 1174
HphI GGTGA 4 cut(s) 617, 668, 859, 1833
Hpy166II GTNNAC 4 cut(s) 1088, 1550, 1827, 2123
Hpy8I GTNNAC 4 cut(s) 1088, 1550, 1827, 2123
Hpy99I CGWCG 2 cut(s) 405, 2265
HpyAV CCTTC 6 cut(s) 360, 363, 888, 1351, 1394, 2279
HpyCH4III ACNGT 6 cut(s) 932, 1180, 1274, 1547, 1622, 2527
HpyCH4IV ACGT 4 cut(s) 182, 400, 429, 2260
HpyF10VI GCNNNNNNNGC 5 cut(s) 677, 1570, 1579, 1898, 2036
HpyF3I CTNAG 7 cut(s) 153, 171, 994, 1218, 1281, 1902, 2191
HpySE526I ACGT 4 cut(s) 182, 400, 429, 2260
HspAI GCGC 4 cut(s) 18, 1582, 2350, 2387
Ksp22I TGATCA 1 cut(s) 232
LmnI GCTCC 4 cut(s) 676, 1100, 2154, 2477
Lsp1109I GCAGC 8 cut(s) 226, 1756, 1873, 1876, 1990, 2026, 2054, 2077
MaeII ACGT 4 cut(s) 182, 400, 429, 2260
MaeIII GTNAC 6 cut(s) 83, 191, 978, 1056, 1662, 1799
MfeI CAATTG 2 cut(s) 254, 615
MflI RGATCY 5 cut(s) 8, 46, 844, 1319, 1432
MhlI GDGCHC 4 cut(s) 1384, 1552, 2469, 2508
MlsI TGGCCA 2 cut(s) 1293, 2117
MluNI TGGCCA 2 cut(s) 1293, 2117
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 4 cut(s) 196, 951, 1287, 1611
Mox20I TGGCCA 2 cut(s) 1293, 2117
Mph1103I ATGCAT 1 cut(s) 967
MroXI GAANNNNTTC 1 cut(s) 2455
MscI TGGCCA 2 cut(s) 1293, 2117
MslI CAYNNNNRTG 2 cut(s) 518, 2100
Msp20I TGGCCA 2 cut(s) 1293, 2117
MspA1I CMGCKG 3 cut(s) 1514, 1747, 2447
MspI CCGG 1 cut(s) 1174
MspR9I CCNGG 2 cut(s) 1098, 2373
MunI CAATTG 2 cut(s) 254, 615
MvaI CCWGG 2 cut(s) 1098, 2373
MwoI GCNNNNNNNGC 5 cut(s) 677, 1570, 1579, 1898, 2036
NcoI CCATGG 2 cut(s) 806, 2508
NdeI CATATG 2 cut(s) 1438, 2156
NlaIV GGNNCC 5 cut(s) 816, 1381, 1565, 2162, 2217
NmuCI GTSAC 3 cut(s) 191, 1662, 1799
NsbI TGCGCA 1 cut(s) 1583
NsiI ATGCAT 1 cut(s) 967
NspI RCATGY 3 cut(s) 695, 1217, 2129
PaeI GCATGC 1 cut(s) 1217
PagI TCATGA 1 cut(s) 1719
PciI ACATGT 1 cut(s) 2125
PdmI GAANNNNTTC 1 cut(s) 2455
PfeI GAWTC 6 cut(s) 266, 779, 1466, 1697, 2009, 2223
PfoI TCCNGGA 1 cut(s) 1096
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 183
PpuMI RGGWCCY 1 cut(s) 2216
PscI ACATGT 1 cut(s) 2125
PshAI GACNNNNGTC 1 cut(s) 1275
PshBI ATTAAT 2 cut(s) 756, 2268
Psp1406I AACGTT 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 2216
Psp6I CCWGG 2 cut(s) 1096, 2371
PspFI CCCAGC 2 cut(s) 1145, 2468
PspGI CCWGG 2 cut(s) 1096, 2371
PspN4I GGNNCC 5 cut(s) 816, 1381, 1565, 2162, 2217
PspPI GGNCC 5 cut(s) 556, 1132, 2160, 2216, 2582
PspPPI RGGWCCY 1 cut(s) 2216
PstI CTGCAG 2 cut(s) 76, 2044
PstNI CAGNNNCTG 2 cut(s) 1517, 1666
PsuI RGATCY 5 cut(s) 8, 46, 844, 1319, 1432
PvuII CAGCTG 2 cut(s) 1747, 2447
RsaI GTAC 7 cut(s) 251, 512, 717, 2328, 2341, 2556, 2609
RsaNI GTAC 7 cut(s) 250, 511, 716, 2327, 2340, 2555, 2608
RseI CAYNNNNRTG 2 cut(s) 518, 2100
Sau96I GGNCC 5 cut(s) 556, 1132, 2160, 2216, 2582
ScaI AGTACT 1 cut(s) 2556
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 1098, 2373
SduI GDGCHC 4 cut(s) 1384, 1552, 2469, 2508
SfcI CTRYAG 4 cut(s) 72, 1893, 2040, 2550
SinI GGWCC 5 cut(s) 556, 1132, 2160, 2216, 2582
SmiMI CAYNNNNRTG 2 cut(s) 518, 2100
SmlI CTYRAG 1 cut(s) 1688
SmoI CTYRAG 1 cut(s) 1688
SphI GCATGC 1 cut(s) 1217
SsiI CCGC 4 cut(s) 133, 1514, 1558, 2399
SspI AATATT 2 cut(s) 687, 1714
StyD4I CCNGG 2 cut(s) 1096, 2371
StyI CCWWGG 3 cut(s) 536, 806, 2508
TaaI ACNGT 6 cut(s) 932, 1180, 1274, 1547, 1622, 2527
TaiI ACGT 4 cut(s) 185, 403, 432, 2263
TaqI TCGA 5 cut(s) 318, 403, 1162, 2256, 2263
TatI WGTACW 4 cut(s) 510, 715, 2554, 2607
TauI GCSGC 3 cut(s) 135, 1517, 2402
TfiI GAWTC 6 cut(s) 266, 779, 1466, 1697, 2009, 2223
TscAI CASTG 5 cut(s) 889, 1552, 1671, 1984, 2532
TseFI GTSAC 3 cut(s) 191, 1662, 1799
TseI GCWGC 8 cut(s) 239, 1744, 1886, 1889, 2003, 2039, 2042, 2090
Tsp45I GTSAC 3 cut(s) 191, 1662, 1799
TspGWI ACGGA 2 cut(s) 1821, 1864
TspRI CASTG 5 cut(s) 889, 1552, 1671, 1984, 2532
VneI GTGCAC 1 cut(s) 1548
VpaK11BI GGWCC 5 cut(s) 556, 1132, 2160, 2216, 2582
VspI ATTAAT 2 cut(s) 756, 2268
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 9 cut(s) 455, 767, 827, 853, 919, 1047, 1238, 1595, 1958
XbaI TCTAGA 3 cut(s) 61, 1013, 1529
XceI RCATGY 3 cut(s) 695, 1217, 2129
XmiI GTMKAC 2 cut(s) 1826, 2122
XmnI GAANNNNTTC 1 cut(s) 2455
ZrmI AGTACT 1 cut(s) 2556
Zsp2I ATGCAT 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.