Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013440

Physical Location & Seq

Genomic Coordinates Forward (+)

29206567 .. 29208145

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCCACTGGTGGAAAAGTCTCCTTCAAAGTCACTCTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTACCAGAAGGAGCTCCGTTCACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATCATCACTAATGATGGGATCGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAGCACGGATCTGAACTAAGATTGATCCCGCGTGATAGAGTTGGAGCTGTGTTTGTGATGGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071569 GO:0071704 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ufm1

Protein Analysis

93

Amino Acids

9.93

Weight (kDa)

9.22

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufm1	PF03671	6 - 80	4.2e-42	Ubiquitin fold modifier 1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77710
fragaria_vesca	FvH4_2g26390
malus_domestica	MD08G1169400.v1.1 MD15G1356000.v1.1
prunus_persica	Prupe.1G503300_v2.0.a1 Prupe.1G503300_v2.0.a1
pyrus_communis	pycom08g14480 pycom15g31800
rosa_chinensis	RchiOBHm_Chr6g0294951
rosa_multiflora	Rmu_sc0002700.1_g000040
rosa_roxburghii	Rroxscaffold_7G00172800
rosa_rugosa	Rorug06G0248600 Rorug06G0248800
rosa_samantha	Rh6AG361800 Rh6BG369300 Rh6CG375800 Rh6DG362300
rosa_wichuraiana	Rw6G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	2 cut(s)	101, 242
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	7 cut(s)	41, 54, 179, 185, 229, 232, 269
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	28, 64, 130
AluBI	AGCT	3 cut(s)	55, 89, 260
AluI	AGCT	3 cut(s)	55, 89, 260
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	7 cut(s)	41, 54, 179, 185, 229, 232, 269
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	46, 274
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	161, 161, 265
BceAI	ACGGC	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	48, 135, 276
Bpu10I	CCTNAGC	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	176
BseJI	GATNNNNATC	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
BspACI	CCGC	2 cut(s)	101, 242
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	48, 135, 276
BspPI	GGATC	7 cut(s)	41, 54, 179, 185, 229, 232, 269
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
Bst6I	CTCTTC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	51, 230
BstFNI	CGCG	1 cut(s)	244
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	6 cut(s)	49, 174, 180, 224, 240, 277
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	3 cut(s)	46, 221, 274
BstYI	RGATCY	3 cut(s)	46, 221, 274
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	6
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	77
CviJI	RGCY	4 cut(s)	5, 55, 89, 260
CviKI_1	RGCY	4 cut(s)	5, 55, 89, 260
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	51, 230
DpnI	GATC	6 cut(s)	48, 173, 179, 223, 239, 276
DpnII	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	91
FaiI	YATR	1 cut(s)	280
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	117
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	5 cut(s)	39, 46, 108, 213, 226
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	2 cut(s)	34, 77
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	51, 230
HpySE526I	ACGT	1 cut(s)	204
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
LmnI	GCTCC	3 cut(s)	86, 94, 257
LpnPI	CCDG	3 cut(s)	93, 160, 183
Lsp1109I	GCAGC	1 cut(s)	128
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	6 cut(s)	48, 173, 179, 223, 239, 276
MboI	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	3 cut(s)	46, 221, 274
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	2 cut(s)	147, 195
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	244
NdeII	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
NlaIV	GGNNCC	3 cut(s)	48, 135, 276
NmuCI	GTSAC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	91
Psp1406I	AACGTT	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	48, 135, 276
PsuI	RGATCY	3 cut(s)	46, 221, 274
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	91
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	46, 171, 177, 221, 237, 274
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	5 cut(s)	57, 91, 135, 207, 262
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	101, 242
SstI	GAGCTC	1 cut(s)	91
TaiI	ACGT	1 cut(s)	207
TasI	AATT	1 cut(s)	110
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	81, 234
TspRI	CASTG	1 cut(s)	13
XapI	RAATTY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.