Rh6BG369300

Ubiquitin-fold modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013440
Physical Location & Seq
Reverse (-)
59882273 .. 59885053
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG369300.1

Sequence Viewer

Length: 270 bp
ATGGCGGGTGGTGGAAAGGTGTCATTCAAGGTTACTCTAACCTCCGATCCAAAGCTGCCTTTCAAAGTGTTTAGCGTTCCAGAGGCAGCCCCTTTCACCGCCGTGCTCAAATTCGCCGCCGAGGAATTCAAAGTGCCTCCCCAGACCAGCGCCATCATCACCAACGATGGTGTTGGAATTAACCCTCAGCAAAGTGCAGGTATGCCAATGCTTTATCTCTATTGCTCGAGATTCCCTTCTCCATTCAATTGTGTCCTAATGAAATTTTAG

Protein Analysis

89

Amino Acids

9.61

Weight (kDa)

9.06

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ufm1 PF03671 6 - 68 1.2e-33 Ubiquitin fold modifier 1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77710
fragaria_vesca FvH4_2g26390
malus_domestica MD08G1169400.v1.1 MD15G1356000.v1.1
prunus_persica Prupe.1G503300_v2.0.a1 Prupe.1G503300_v2.0.a1
pyrus_communis pycom08g14480 pycom15g31800
rosa_chinensis RchiOBHm_Chr6g0294951
rosa_multiflora Rmu_sc0002700.1_g000040
rosa_roxburghii Rroxscaffold_7G00172800
rosa_rugosa Rorug06G0248600 Rorug06G0248800
rosa_samantha Rh6AG361800 Rh6BG369300 Rh6CG375800 Rh6DG362300
rosa_wichuraiana Rw6G031560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AciI CCGC 3 cut(s) 5, 99, 117
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 3 cut(s) 110, 125, 263
AgsI TTSAA 4 cut(s) 28, 64, 130, 247
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 55, 86
ApoI RAATTY 3 cut(s) 110, 125, 263
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 88, 151
AvaI CYCGRG 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 42, 98
BccI CCATC 2 cut(s) 161, 161
BceAI ACGGC 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 3 cut(s) 56, 87, 117
BlsI GCNGC 3 cut(s) 57, 88, 118
BmeT110I CYCGRG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 42, 98
BsgI GTGCAG 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 3 cut(s) 5, 99, 117
BspCNI CTCAG 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 42, 98
BveI ACCTGC 1 cut(s) 188
CfoI GCGC 1 cut(s) 152
CviJI RGCY 2 cut(s) 55, 89
CviKI_1 RGCY 2 cut(s) 55, 89
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 125
FaiI YATR 1 cut(s) 203
Fnu4HI GCNGC 3 cut(s) 56, 87, 117
Fsp4HI GCNGC 3 cut(s) 56, 87, 117
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 56, 87, 117
HaeII RGCGCY 1 cut(s) 153
HhaI GCGC 1 cut(s) 152
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 1 cut(s) 231
HphI GGTGA 2 cut(s) 88, 151
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 80, 228
HpyAV CCTTC 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 186
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 93, 155, 160, 183
Lsp1109I GCAGC 2 cut(s) 42, 98
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MfeI CAATTG 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 5 cut(s) 110, 125, 177, 247, 263
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 5 cut(s) 52, 76, 115, 147, 195
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 101
MunI CAATTG 1 cut(s) 247
NdeII GATC 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 226
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 3 cut(s) 57, 88, 118
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 56, 87, 117
Sau3AI GATC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 108
SetI ASST 5 cut(s) 21, 33, 44, 57, 202
Sfr274I CTCGAG 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 5 cut(s) 110, 125, 177, 247, 263
SsiI CCGC 3 cut(s) 5, 99, 117
TaqI TCGA 1 cut(s) 227
TasI AATT 5 cut(s) 110, 125, 177, 247, 263
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 2 cut(s) 55, 86
XapI RAATTY 3 cut(s) 110, 125, 263
XhoI CTCGAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.