Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013440

Physical Location & Seq

Genomic Coordinates Forward (+)

42910790 .. 42913249

Gene Structure 2460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1356000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGGGTGGTGGAAAGGTCTCCTTCAAAGTCACTCTAACCTCCGATCCAAAGCTCCCCTTCAAAGTGTTTAGCGTTCCGGAAGCAGCCCCTTTCACCGCCGTGCTGAAATTCGCGGCCGAGGAATTCAAAGTGCCTCCCCAAACCAGCGCCATCATCACGAACGATGGTGTTGGAATCAATCCTCAGCAAAGTGCAGGGAATGTATTCCTCAAGCATGGTTCTGAACTACGCCTGATTCCTCGAGATAGGGTTGGGGCTTTTGGAACAATGGACGCAGCGTTACAATCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071569 GO:0071704 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ufm1

Protein Analysis

99

Amino Acids

10.33

Weight (kDa)

9.22

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufm1	PF03671	6 - 80	1.5e-42	Ubiquitin fold modifier 1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77710
fragaria_vesca	FvH4_2g26390
malus_domestica	MD08G1169400.v1.1 MD15G1356000.v1.1
prunus_persica	Prupe.1G503300_v2.0.a1 Prupe.1G503300_v2.0.a1
pyrus_communis	pycom08g14480 pycom15g31800
rosa_chinensis	RchiOBHm_Chr6g0294951
rosa_multiflora	Rmu_sc0002700.1_g000040
rosa_roxburghii	Rroxscaffold_7G00172800
rosa_rugosa	Rorug06G0248600 Rorug06G0248800
rosa_samantha	Rh6AG361800 Rh6BG369300 Rh6CG375800 Rh6DG362300
rosa_wichuraiana	Rw6G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	3 cut(s)	5, 99, 116
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	110, 125
AgsI	TTSAA	3 cut(s)	28, 64, 130
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	243
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	86, 278
ApoI	RAATTY	2 cut(s)	110, 125
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	98, 290
BccI	CCATC	2 cut(s)	161, 161
BceAI	ACGGC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	3 cut(s)	87, 117, 279
BlsI	GCNGC	3 cut(s)	88, 118, 280
BmeT110I	CYCGRG	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	79
BseAI	TCCGGA	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	200
BseX3I	CGGCCG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	98, 290
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	243
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	3 cut(s)	5, 99, 116
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	199
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	116
BspPI	GGATC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	98, 290
BstZI	CGGCCG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	152
CseI	GACGC	1 cut(s)	284
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	4 cut(s)	55, 89, 119, 260
CviKI_1	RGCY	4 cut(s)	55, 89, 119, 260
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	117
EagI	CGGCCG	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	221
FaiI	YATR	1 cut(s)	219
FalI	AAGNNNNNCTT	4 cut(s)	8, 40, 44, 76
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	87, 117, 279
Fsp4HI	GCNGC	3 cut(s)	87, 117, 279
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	3 cut(s)	87, 117, 279
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	177, 238
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	46, 226
Hpy188III	TCNNGA	3 cut(s)	80, 160, 245
HpyAV	CCTTC	2 cut(s)	34, 70
HpyCH4V	TGCA	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	93, 160, 183, 248
Lsp1109I	GCAGC	2 cut(s)	98, 290
MaeIII	GTNAC	2 cut(s)	31, 282
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MluCI	AATT	2 cut(s)	110, 125
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	6 cut(s)	52, 115, 147, 195, 221, 252
MroI	TCCGGA	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	116
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	177, 238
PkrI	GCNGC	3 cut(s)	88, 118, 280
RseI	CAYNNNNRTG	1 cut(s)	101
SatI	GCNGC	3 cut(s)	87, 117, 279
Sau3AI	GATC	1 cut(s)	46
SetI	ASST	3 cut(s)	21, 44, 57
Sfr274I	CTCGAG	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	212, 243
SmoI	CTYRAG	2 cut(s)	212, 243
Sse9I	AATT	2 cut(s)	110, 125
SsiI	CCGC	3 cut(s)	5, 99, 116
TaqI	TCGA	1 cut(s)	244
TasI	AATT	2 cut(s)	110, 125
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	177, 238
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	86, 278
Tsp45I	GTSAC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	110, 125
XhoI	CTCGAG	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.