Ubiquitin-fold modifier
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77710 |
| fragaria_vesca | FvH4_2g26390 |
| malus_domestica | MD08G1169400.v1.1 MD15G1356000.v1.1 |
| prunus_persica | Prupe.1G503300_v2.0.a1 Prupe.1G503300_v2.0.a1 |
| pyrus_communis | pycom08g14480 pycom15g31800 |
| rosa_chinensis | RchiOBHm_Chr6g0294951 |
| rosa_multiflora | Rmu_sc0002700.1_g000040 |
| rosa_roxburghii | Rroxscaffold_7G00172800 |
| rosa_rugosa | Rorug06G0248600 Rorug06G0248800 |
| rosa_samantha | Rh6AG361800 Rh6BG369300 Rh6CG375800 Rh6DG362300 |
| rosa_wichuraiana | Rw6G031560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 6 cut(s) | 343, 349, 355, 361, 641, 1351 |
| AatII | GACGTC | 1 cut(s) | 1459 |
| Acc16I | TGCGCA | 1 cut(s) | 3140 |
| AccB1I | GGYRCC | 2 cut(s) | 92, 775 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1598 |
| AccBSI | CCGCTC | 1 cut(s) | 2339 |
| AccI | GTMKAC | 3 cut(s) | 1275, 1621, 1693 |
| AccII | CGCG | 3 cut(s) | 75, 146, 2202 |
| AciI | CCGC | 7 cut(s) | 23, 73, 756, 1754, 2027, 2339, 2962 |
| AclWI | GGATC | 7 cut(s) | 664, 704, 2026, 2205, 2859, 3191, 3541 |
| AcoI | YGGCCR | 3 cut(s) | 1032, 1108, 1220 |
| AcsI | RAATTY | 4 cut(s) | 319, 922, 1899, 2657 |
| AcuI | CTGAAG | 8 cut(s) | 1050, 2177, 3064, 3195, 3327, 3393, 3459, 3522 |
| AcyI | GRCGYC | 6 cut(s) | 5, 93, 1456, 1604, 2006, 2790 |
| AdeI | CACNNNGTG | 1 cut(s) | 2699 |
| AfeI | AGCGCT | 1 cut(s) | 2255 |
| AgeI | ACCGGT | 1 cut(s) | 136 |
| AgsI | TTSAA | 8 cut(s) | 459, 1330, 1514, 1852, 2099, 2561, 3031, 3576 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1608, 3061 |
| AhlI | ACTAGT | 1 cut(s) | 2939 |
| AjiI | CACGTC | 1 cut(s) | 2021 |
| AjnI | CCWGG | 9 cut(s) | 394, 579, 1217, 1606, 1612, 1642, 1678, 3065, 3379 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 1069, 1101, 1886, 1918, 2482, 2514, 3439, 3471 |
| Alw21I | GWGCWC | 1 cut(s) | 2403 |
| AlwI | GGATC | 7 cut(s) | 664, 704, 2026, 2205, 2859, 3191, 3541 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 974, 1730, 3521 |
| Ama87I | CYCGRG | 1 cut(s) | 616 |
| Aor51HI | AGCGCT | 1 cut(s) | 2255 |
| ApaI | GGGCCC | 1 cut(s) | 984 |
| ApoI | RAATTY | 4 cut(s) | 319, 922, 1899, 2657 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 848, 880, 2744, 2776 |
| AsiGI | ACCGGT | 1 cut(s) | 136 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3454, 3583 |
| AspLEI | GCGC | 5 cut(s) | 13, 95, 148, 2256, 3141 |
| AsuC2I | CCSGG | 6 cut(s) | 979, 1008, 1126, 1686, 2147, 2926 |
| AsuHPI | GGTGA | 6 cut(s) | 1080, 1316, 2192, 2558, 2685, 2762 |
| AsuII | TTCGAA | 1 cut(s) | 2370 |
| AsuNHI | GCTAGC | 1 cut(s) | 2627 |
| AvaI | CYCGRG | 1 cut(s) | 616 |
| BaeGI | GKGCMC | 2 cut(s) | 160, 984 |
| BalI | TGGCCA | 2 cut(s) | 1110, 1222 |
| BanI | GGYRCC | 2 cut(s) | 92, 775 |
| BanII | GRGCYC | 2 cut(s) | 984, 2403 |
| BauI | CACGAG | 1 cut(s) | 1314 |
| BbsI | GAAGAC | 5 cut(s) | 2001, 2595, 3201, 3333, 3465 |
| Bbv12I | GWGCWC | 1 cut(s) | 2403 |
| BbvCI | CCTCAGC | 1 cut(s) | 1116 |
| BceAI | ACGGC | 2 cut(s) | 86, 944 |
| BciT130I | CCWGG | 9 cut(s) | 396, 581, 1219, 1608, 1614, 1644, 1680, 3067, 3381 |
| BciVI | GTATCC | 2 cut(s) | 2839, 3005 |
| BclI | TGATCA | 2 cut(s) | 1306, 2719 |
| BcnI | CCSGG | 6 cut(s) | 979, 1008, 1126, 1686, 2147, 2926 |
| BcuI | ACTAGT | 1 cut(s) | 2939 |
| BfaI | CTAG | 8 cut(s) | 765, 1911, 2036, 2426, 2628, 2652, 2940, 2991 |
| BfmI | CTRYAG | 3 cut(s) | 2120, 2475, 2685 |
| BfoI | RGCGCY | 2 cut(s) | 96, 2257 |
| BfuI | GTATCC | 2 cut(s) | 2839, 3005 |
| BglII | AGATCT | 1 cut(s) | 1885 |
| BmcAI | AGTACT | 2 cut(s) | 1253, 2635 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1608, 3061 |
| BmeT110I | CYCGRG | 1 cut(s) | 616 |
| BmgBI | CACGTC | 1 cut(s) | 2021 |
| BmrI | ACTGGG | 4 cut(s) | 1586, 1622, 1658, 2356 |
| BmsI | GCATC | 8 cut(s) | 34, 302, 660, 1145, 1629, 1665, 2220, 2334 |
| BmtI | GCTAGC | 1 cut(s) | 2631 |
| BmuI | ACTGGG | 4 cut(s) | 1586, 1622, 1658, 2356 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1980, 2687 |
| BpiI | GAAGAC | 5 cut(s) | 2001, 2595, 3201, 3333, 3465 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3622, 3654 |
| BpmI | CTGGAG | 7 cut(s) | 360, 1197, 1683, 1910, 2091, 2916, 3363 |
| Bpu10I | CCTNAGC | 2 cut(s) | 810, 1116 |
| Bpu14I | TTCGAA | 1 cut(s) | 2370 |
| BpuEI | CTTGAG | 3 cut(s) | 477, 1391, 3093 |
| BpuMI | CCSGG | 6 cut(s) | 979, 1008, 1126, 1686, 2147, 2926 |
| BsaAI | YACGTR | 1 cut(s) | 2276 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2850 |
| BsaHI | GRCGYC | 6 cut(s) | 5, 93, 1456, 1604, 2006, 2790 |
| BsaI | GGTCTC | 3 cut(s) | 131, 240, 1549 |
| BsaJI | CCNNGG | 8 cut(s) | 394, 579, 580, 1124, 1223, 1648, 2841, 3023 |
| BsaWI | WCCGGW | 3 cut(s) | 122, 136, 1502 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 576, 606, 861, 891, 1817, 1847 |
| Bse118I | RCCGGY | 2 cut(s) | 136, 805 |
| Bse3DI | GCAATG | 2 cut(s) | 1540, 1549 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2850 |
| BseBI | CCWGG | 9 cut(s) | 396, 581, 1219, 1608, 1614, 1644, 1680, 3067, 3381 |
| BseDI | CCNNGG | 8 cut(s) | 394, 579, 580, 1124, 1223, 1648, 2841, 3023 |
| BseJI | GATNNNNATC | 1 cut(s) | 2850 |
| BseMI | GCAATG | 2 cut(s) | 1540, 1549 |
| BseMII | CTCAG | 8 cut(s) | 374, 1130, 1805, 2289, 2472, 2516, 3273, 3339 |
| BseRI | GAGGAG | 2 cut(s) | 1838, 2421 |
| BseSI | GKGCMC | 2 cut(s) | 160, 984 |
| BseYI | CCCAGC | 2 cut(s) | 1193, 2732 |
| BsgI | GTGCAG | 5 cut(s) | 291, 321, 327, 333, 339 |
| Bsh1236I | CGCG | 3 cut(s) | 75, 146, 2202 |
| BshNI | GGYRCC | 2 cut(s) | 92, 775 |
| BshTI | ACCGGT | 1 cut(s) | 136 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2403 |
| BsiHKCI | CYCGRG | 1 cut(s) | 616 |
| BslFI | GGGAC | 6 cut(s) | 1139, 1382, 1467, 1615, 1668, 3269 |
| BsmBI | CGTCTC | 1 cut(s) | 1281 |
| BsmFI | GGGAC | 6 cut(s) | 1139, 1382, 1467, 1615, 1668, 3269 |
| Bso31I | GGTCTC | 3 cut(s) | 131, 240, 1549 |
| BsoBI | CYCGRG | 1 cut(s) | 616 |
| Bsp119I | TTCGAA | 1 cut(s) | 2370 |
| Bsp120I | GGGCCC | 1 cut(s) | 980 |
| Bsp1286I | GDGCHC | 3 cut(s) | 160, 984, 2403 |
| Bsp1407I | TGTACA | 1 cut(s) | 1959 |
| BspACI | CCGC | 7 cut(s) | 23, 73, 756, 1754, 2027, 2339, 2962 |
| BspCNI | CTCAG | 8 cut(s) | 373, 1129, 1806, 2290, 2473, 2515, 3272, 3338 |
| BspFNI | CGCG | 3 cut(s) | 75, 146, 2202 |
| BspHI | TCATGA | 1 cut(s) | 2854 |
| BspMAI | CTGCAG | 1 cut(s) | 2124 |
| BspOI | GCTAGC | 1 cut(s) | 2631 |
| BspPI | GGATC | 7 cut(s) | 664, 704, 2026, 2205, 2859, 3191, 3541 |
| BspQI | GCTCTTC | 1 cut(s) | 2951 |
| BspT104I | TTCGAA | 1 cut(s) | 2370 |
| BspT107I | GGYRCC | 2 cut(s) | 92, 775 |
| BspTNI | GGTCTC | 3 cut(s) | 131, 240, 1549 |
| BsrBI | CCGCTC | 1 cut(s) | 2339 |
| BsrDI | GCAATG | 2 cut(s) | 1540, 1549 |
| BsrFI | RCCGGY | 2 cut(s) | 136, 805 |
| BsrGI | TGTACA | 1 cut(s) | 1959 |
| BssAI | RCCGGY | 2 cut(s) | 136, 805 |
| BssECI | CCNNGG | 8 cut(s) | 394, 579, 580, 1124, 1223, 1648, 2841, 3023 |
| BssNI | GRCGYC | 6 cut(s) | 5, 93, 1456, 1604, 2006, 2790 |
| BssSI | CACGAG | 1 cut(s) | 1314 |
| BssT1I | CCWWGG | 4 cut(s) | 1223, 1648, 2841, 3023 |
| Bst2BI | CACGAG | 1 cut(s) | 1314 |
| Bst2UI | CCWGG | 9 cut(s) | 396, 581, 1219, 1608, 1614, 1644, 1680, 3067, 3381 |
| BstACI | GRCGYC | 6 cut(s) | 5, 93, 1456, 1604, 2006, 2790 |
| BstAUI | TGTACA | 1 cut(s) | 1959 |
| BstBAI | YACGTR | 1 cut(s) | 2276 |
| BstBI | TTCGAA | 1 cut(s) | 2370 |
| BstC8I | GCNNGC | 5 cut(s) | 732, 1397, 1540, 2315, 2629 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1222 |
| BstFNI | CGCG | 3 cut(s) | 75, 146, 2202 |
| BstH2I | RGCGCY | 2 cut(s) | 96, 2257 |
| BstHHI | GCGC | 5 cut(s) | 13, 95, 148, 2256, 3141 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 517, 1539, 1720, 1865, 2208, 2477, 3616 |
| BstNI | CCWGG | 9 cut(s) | 396, 581, 1219, 1608, 1614, 1644, 1680, 3067, 3381 |
| BstNSI | RCATGY | 3 cut(s) | 164, 625, 1399 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1980, 2687 |
| BstSFI | CTRYAG | 3 cut(s) | 2120, 2475, 2685 |
| BstSLI | GKGCMC | 2 cut(s) | 160, 984 |
| BstUI | CGCG | 3 cut(s) | 75, 146, 2202 |
| BstV2I | GAAGAC | 5 cut(s) | 2001, 2595, 3201, 3333, 3465 |
| BstX2I | RGATCY | 5 cut(s) | 656, 1885, 2031, 3196, 3533 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 431 |
| BstYI | RGATCY | 5 cut(s) | 656, 1885, 2031, 3196, 3533 |
| BsuI | GTATCC | 2 cut(s) | 2839, 3005 |
| BtgZI | GCGATG | 1 cut(s) | 90 |
| BtrI | CACGTC | 1 cut(s) | 2021 |
| BtsI | GCAGTG | 2 cut(s) | 1021, 1489 |
| BtsIMutI | CAGTG | 8 cut(s) | 225, 522, 597, 1021, 1299, 1489, 2778, 3230 |
| Cac8I | GCNNGC | 5 cut(s) | 732, 1397, 1540, 2315, 2629 |
| CaiI | CAGNNNCTG | 3 cut(s) | 974, 1730, 3521 |
| CciI | TCATGA | 1 cut(s) | 2854 |
| CfoI | GCGC | 5 cut(s) | 13, 95, 148, 2256, 3141 |
| Cfr10I | RCCGGY | 2 cut(s) | 136, 805 |
| CpoI | CGGWCCG | 1 cut(s) | 3394 |
| CseI | GACGC | 5 cut(s) | 559, 1612, 1995, 2798, 3402 |
| CspAI | ACCGGT | 1 cut(s) | 136 |
| CspI | CGGWCCG | 1 cut(s) | 3394 |
| DinI | GGCGCC | 1 cut(s) | 94 |
| DraI | TTTAAA | 1 cut(s) | 1356 |
| DraIII | CACNNNGTG | 1 cut(s) | 2699 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1608, 3061 |
| EaeI | YGGCCR | 3 cut(s) | 1032, 1108, 1220 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1608, 3061 |
| EciI | GGCGGA | 1 cut(s) | 2042 |
| Ecl136II | GAGCTC | 1 cut(s) | 2401 |
| Eco130I | CCWWGG | 4 cut(s) | 1223, 1648, 2841, 3023 |
| Eco24I | GRGCYC | 2 cut(s) | 984, 2403 |
| Eco31I | GGTCTC | 3 cut(s) | 131, 240, 1549 |
| Eco32I | GATATC | 1 cut(s) | 3294 |
| Eco47III | AGCGCT | 1 cut(s) | 2255 |
| Eco53kI | GAGCTC | 1 cut(s) | 2401 |
| Eco57I | CTGAAG | 8 cut(s) | 1050, 2177, 3064, 3195, 3327, 3393, 3459, 3522 |
| Eco88I | CYCGRG | 1 cut(s) | 616 |
| EcoICRI | GAGCTC | 1 cut(s) | 2401 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1222 |
| EcoO109I | RGGNCCY | 3 cut(s) | 981, 1153, 3608 |
| EcoRII | CCWGG | 9 cut(s) | 394, 579, 1217, 1606, 1612, 1642, 1678, 3065, 3379 |
| EcoRV | GATATC | 1 cut(s) | 3294 |
| EcoT14I | CCWWGG | 4 cut(s) | 1223, 1648, 2841, 3023 |
| EcoT22I | ATGCAT | 1 cut(s) | 1003 |
| EcoT38I | GRGCYC | 2 cut(s) | 984, 2403 |
| EgeI | GGCGCC | 1 cut(s) | 94 |
| EheI | GGCGCC | 1 cut(s) | 94 |
| ErhI | CCWWGG | 4 cut(s) | 1223, 1648, 2841, 3023 |
| Esp3I | CGTCTC | 1 cut(s) | 1281 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 471, 503, 1993, 2025 |
| FaqI | GGGAC | 6 cut(s) | 1139, 1382, 1467, 1615, 1668, 3269 |
| FauNDI | CATATG | 2 cut(s) | 1186, 2575 |
| FbaI | TGATCA | 2 cut(s) | 1306, 2719 |
| FblI | GTMKAC | 3 cut(s) | 1275, 1621, 1693 |
| FriOI | GRGCYC | 2 cut(s) | 984, 2403 |
| FspBI | CTAG | 8 cut(s) | 765, 1911, 2036, 2426, 2628, 2652, 2940, 2991 |
| FspI | TGCGCA | 1 cut(s) | 3140 |
| GlaI | GCGC | 5 cut(s) | 12, 94, 147, 2255, 3140 |
| GsaI | CCCAGC | 2 cut(s) | 1197, 2736 |
| GsuI | CTGGAG | 7 cut(s) | 360, 1197, 1683, 1910, 2091, 2916, 3363 |
| HaeII | RGCGCY | 2 cut(s) | 96, 2257 |
| HgaI | GACGC | 5 cut(s) | 559, 1612, 1995, 2798, 3402 |
| HhaI | GCGC | 5 cut(s) | 13, 95, 148, 2256, 3141 |
| Hin1I | GRCGYC | 6 cut(s) | 5, 93, 1456, 1604, 2006, 2790 |
| Hin6I | GCGC | 5 cut(s) | 11, 93, 146, 2254, 3139 |
| HinP1I | GCGC | 5 cut(s) | 11, 93, 146, 2254, 3139 |
| HincII | GTYRAC | 4 cut(s) | 1276, 1622, 1694, 2806 |
| HindII | GTYRAC | 4 cut(s) | 1276, 1622, 1694, 2806 |
| HindIII | AAGCTT | 2 cut(s) | 480, 2469 |
| HphI | GGTGA | 6 cut(s) | 1080, 1316, 2192, 2558, 2685, 2762 |
| Hpy166II | GTNNAC | 8 cut(s) | 332, 608, 1019, 1276, 1622, 1694, 2806, 3603 |
| Hpy8I | GTNNAC | 8 cut(s) | 332, 608, 1019, 1276, 1622, 1694, 2806, 3603 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 60, 107 |
| HpyCH4IV | ACGT | 4 cut(s) | 1456, 2020, 2275, 2802 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 517, 1539, 1720, 1865, 2208, 2477, 3616 |
| HpySE526I | ACGT | 4 cut(s) | 1456, 2020, 2275, 2802 |
| Hsp92I | GRCGYC | 6 cut(s) | 5, 93, 1456, 1604, 2006, 2790 |
| HspAI | GCGC | 5 cut(s) | 11, 93, 146, 2254, 3139 |
| KasI | GGCGCC | 1 cut(s) | 92 |
| Ksp22I | TGATCA | 2 cut(s) | 1306, 2719 |
| LguI | GCTCTTC | 1 cut(s) | 2951 |
| LweI | GCATC | 8 cut(s) | 34, 302, 660, 1145, 1629, 1665, 2220, 2334 |
| MaeI | CTAG | 8 cut(s) | 765, 1911, 2036, 2426, 2628, 2652, 2940, 2991 |
| MaeII | ACGT | 4 cut(s) | 1456, 2020, 2275, 2802 |
| MaeIII | GTNAC | 9 cut(s) | 223, 406, 661, 1045, 1316, 1833, 1973, 2699, 2750 |
| MbiI | CCGCTC | 1 cut(s) | 2339 |
| MfeI | CAATTG | 1 cut(s) | 2151 |
| MflI | RGATCY | 5 cut(s) | 656, 1885, 2031, 3196, 3533 |
| MhlI | GDGCHC | 3 cut(s) | 160, 984, 2403 |
| MlsI | TGGCCA | 2 cut(s) | 1110, 1222 |
| MluNI | TGGCCA | 2 cut(s) | 1110, 1222 |
| Mly113I | GGCGCC | 1 cut(s) | 93 |
| MmeI | TCCRAC | 8 cut(s) | 79, 619, 1612, 1648, 1684, 2505, 2513, 2620 |
| Mox20I | TGGCCA | 2 cut(s) | 1110, 1222 |
| Mph1103I | ATGCAT | 1 cut(s) | 1003 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3454, 3583 |
| MscI | TGGCCA | 2 cut(s) | 1110, 1222 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2727, 3093 |
| Msp20I | TGGCCA | 2 cut(s) | 1110, 1222 |
| MspA1I | CMGCKG | 3 cut(s) | 290, 2480, 2495 |
| MunI | CAATTG | 1 cut(s) | 2151 |
| MvaI | CCWGG | 9 cut(s) | 396, 581, 1219, 1608, 1614, 1644, 1680, 3067, 3381 |
| MvnI | CGCG | 3 cut(s) | 75, 146, 2202 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 517, 1539, 1720, 1865, 2208, 2477, 3616 |
| NarI | GGCGCC | 1 cut(s) | 93 |
| NciI | CCSGG | 6 cut(s) | 979, 1008, 1126, 1686, 2147, 2926 |
| NdeI | CATATG | 2 cut(s) | 1186, 2575 |
| NheI | GCTAGC | 1 cut(s) | 2627 |
| NmuCI | GTSAC | 7 cut(s) | 223, 661, 1316, 1833, 1973, 2699, 2750 |
| NsbI | TGCGCA | 1 cut(s) | 3140 |
| NsiI | ATGCAT | 1 cut(s) | 1003 |
| NspI | RCATGY | 3 cut(s) | 164, 625, 1399 |
| NspV | TTCGAA | 1 cut(s) | 2370 |
| PaeI | GCATGC | 1 cut(s) | 1399 |
| PaeR7I | CTCGAG | 1 cut(s) | 616 |
| PagI | TCATGA | 1 cut(s) | 2854 |
| PaqCI | CACCTGC | 6 cut(s) | 343, 349, 355, 361, 641, 1351 |
| PasI | CCCWGGG | 1 cut(s) | 580 |
| PciSI | GCTCTTC | 1 cut(s) | 2951 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 39 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3454, 3583 |
| PflFI | GACNNNGTC | 1 cut(s) | 2926 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1598 |
| PfoI | TCCNGGA | 1 cut(s) | 3379 |
| PinAI | ACCGGT | 1 cut(s) | 136 |
| PluTI | GGCGCC | 1 cut(s) | 96 |
| Ppu21I | YACGTR | 1 cut(s) | 2276 |
| PpuMI | RGGWCCY | 1 cut(s) | 1153 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1980, 2687 |
| Psp124BI | GAGCTC | 1 cut(s) | 2403 |
| Psp5II | RGGWCCY | 1 cut(s) | 1153 |
| Psp6I | CCWGG | 9 cut(s) | 394, 579, 1217, 1606, 1612, 1642, 1678, 3065, 3379 |
| PspFI | CCCAGC | 2 cut(s) | 1193, 2732 |
| PspGI | CCWGG | 9 cut(s) | 394, 579, 1217, 1606, 1612, 1642, 1678, 3065, 3379 |
| PspOMI | GGGCCC | 1 cut(s) | 980 |
| PspPPI | RGGWCCY | 1 cut(s) | 1153 |
| PspXI | VCTCGAGB | 1 cut(s) | 616 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2592, 2624 |
| PstI | CTGCAG | 1 cut(s) | 2124 |
| PstNI | CAGNNNCTG | 3 cut(s) | 974, 1730, 3521 |
| PsuI | RGATCY | 5 cut(s) | 656, 1885, 2031, 3196, 3533 |
| PsyI | GACNNNGTC | 1 cut(s) | 2926 |
| PvuII | CAGCTG | 3 cut(s) | 290, 2480, 2495 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2727, 3093 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3394 |
| RsrII | CGGWCCG | 1 cut(s) | 3394 |
| SacI | GAGCTC | 1 cut(s) | 2403 |
| SalI | GTCGAC | 3 cut(s) | 1274, 1620, 1692 |
| SapI | GCTCTTC | 1 cut(s) | 2951 |
| ScaI | AGTACT | 2 cut(s) | 1253, 2635 |
| SduI | GDGCHC | 3 cut(s) | 160, 984, 2403 |
| SfaNI | GCATC | 8 cut(s) | 34, 302, 660, 1145, 1629, 1665, 2220, 2334 |
| SfcI | CTRYAG | 3 cut(s) | 2120, 2475, 2685 |
| SfoI | GGCGCC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 616 |
| SfuI | TTCGAA | 1 cut(s) | 2370 |
| SlaI | CTCGAG | 1 cut(s) | 616 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2727, 3093 |
| SmlI | CTYRAG | 4 cut(s) | 492, 616, 1406, 3108 |
| SmoI | CTYRAG | 4 cut(s) | 492, 616, 1406, 3108 |
| SpeI | ACTAGT | 1 cut(s) | 2939 |
| SphI | GCATGC | 1 cut(s) | 1399 |
| SsiI | CCGC | 7 cut(s) | 23, 73, 756, 1754, 2027, 2339, 2962 |
| SspDI | GGCGCC | 1 cut(s) | 92 |
| SspI | AATATT | 1 cut(s) | 1261 |
| SspMI | CTAG | 8 cut(s) | 765, 1911, 2036, 2426, 2628, 2652, 2940, 2991 |
| SstI | GAGCTC | 1 cut(s) | 2403 |
| StyI | CCWWGG | 4 cut(s) | 1223, 1648, 2841, 3023 |
| TaiI | ACGT | 4 cut(s) | 1459, 2023, 2278, 2805 |
| TatI | WGTACW | 4 cut(s) | 1251, 1959, 2540, 2633 |
| TauI | GCSGC | 4 cut(s) | 26, 1756, 2342, 2964 |
| TscAI | CASTG | 8 cut(s) | 232, 522, 597, 1021, 1306, 1489, 2778, 3237 |
| TseFI | GTSAC | 7 cut(s) | 223, 661, 1316, 1833, 1973, 2699, 2750 |
| Tsp45I | GTSAC | 7 cut(s) | 223, 661, 1316, 1833, 1973, 2699, 2750 |
| TspDTI | ATGAA | 7 cut(s) | 485, 915, 1173, 2064, 2367, 2391, 2601 |
| TspGWI | ACGGA | 4 cut(s) | 1922, 2455, 2864, 3189 |
| TspRI | CASTG | 8 cut(s) | 232, 522, 597, 1021, 1306, 1489, 2778, 3237 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2926 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1598 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1222 |
| XapI | RAATTY | 4 cut(s) | 319, 922, 1899, 2657 |
| XbaI | TCTAGA | 3 cut(s) | 764, 1910, 2651 |
| XceI | RCATGY | 3 cut(s) | 164, 625, 1399 |
| XhoI | CTCGAG | 1 cut(s) | 616 |
| XmiI | GTMKAC | 3 cut(s) | 1275, 1621, 1693 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3454, 3583 |
| XspI | CTAG | 8 cut(s) | 765, 1911, 2036, 2426, 2628, 2652, 2940, 2991 |
| ZraI | GACGTC | 1 cut(s) | 1457 |
| ZrmI | AGTACT | 2 cut(s) | 1253, 2635 |
| Zsp2I | ATGCAT | 1 cut(s) | 1003 |