FvH4_2g26390

Ubiquitin-fold modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013440
Physical Location & Seq
Reverse (-)
21200618 .. 21202809
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26390.t1

Sequence Viewer

Length: 297 bp
ATGGCGGGTGGTGGAAAGGTGTCATTCAAGGTCACTCTGACCTCCGATCCAAAGCTGCCCTTCAAAGTGTTTAGCGTTCCGGAGGCAGCTCCTTTCACCGCCGTGCTGAAATTCGCCGCCGAGGAATTCAAAGTGCCTCCCCAGACCAGCGCCATCATCACCAACGATGGTGTTGGAATCAATCCTCAGCAAAGTGCAGGCAATGTATTCCTGAAGCATGGTTCTCAACTTCGCCTAATTCCTCGCGATAGGGTTGGATCTATTGGGACAATCAACACATCATTACCATCCAATTGA

Protein Analysis

99

Amino Acids

10.31

Weight (kDa)

9.87

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ufm1 PF03671 6 - 80 3.3e-42 Ubiquitin fold modifier 1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77710
fragaria_vesca FvH4_2g26390
malus_domestica MD08G1169400.v1.1 MD15G1356000.v1.1
prunus_persica Prupe.1G503300_v2.0.a1 Prupe.1G503300_v2.0.a1
pyrus_communis pycom08g14480 pycom15g31800
rosa_chinensis RchiOBHm_Chr6g0294951
rosa_multiflora Rmu_sc0002700.1_g000040
rosa_roxburghii Rroxscaffold_7G00172800
rosa_rugosa Rorug06G0248600 Rorug06G0248800
rosa_samantha Rh6AG361800 Rh6BG369300 Rh6CG375800 Rh6DG362300
rosa_wichuraiana Rw6G031560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 3 cut(s) 5, 99, 117
AclWI GGATC 2 cut(s) 41, 265
AcsI RAATTY 2 cut(s) 110, 125
AcuI CTGAAG 1 cut(s) 233
AgsI TTSAA 3 cut(s) 28, 64, 130
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 2 cut(s) 55, 89
AluI AGCT 2 cut(s) 55, 89
AlwI GGATC 2 cut(s) 41, 265
Aor13HI TCCGGA 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 55, 86
ApoI RAATTY 2 cut(s) 110, 125
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 88, 151
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 42, 98
BccI CCATC 3 cut(s) 161, 161, 295
BceAI ACGGC 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 3 cut(s) 56, 87, 117
BlsI GCNGC 3 cut(s) 57, 88, 118
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 208
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 42, 98
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 2 cut(s) 46, 257
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 3 cut(s) 5, 99, 117
BspCNI CTCAG 1 cut(s) 199
BspEI TCCGGA 1 cut(s) 79
BspFNI CGCG 1 cut(s) 246
BspPI GGATC 2 cut(s) 41, 265
BsrDI GCAATG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 46, 257
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 2 cut(s) 49, 260
BstMBI GATC 2 cut(s) 46, 257
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 42, 98
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BtsCI GGATG 1 cut(s) 287
BtuMI TCGCGA 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 152
CviAII CATG 1 cut(s) 218
CviJI RGCY 2 cut(s) 55, 89
CviKI_1 RGCY 2 cut(s) 55, 89
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 48, 259
DpnII GATC 2 cut(s) 46, 257
Eco57I CTGAAG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 125
FaeI CATG 1 cut(s) 221
FaiI YATR 1 cut(s) 219
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 56, 87, 117
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 3 cut(s) 56, 87, 117
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 56, 87, 117
HaeII RGCGCY 1 cut(s) 153
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 88, 151
Hpy188I TCNGA 2 cut(s) 39, 46
Hpy188III TCNNGA 3 cut(s) 80, 211, 245
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 46, 257
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 5 cut(s) 93, 155, 160, 183, 224
Lsp1109I GCAGC 2 cut(s) 42, 98
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 48, 259
MboI GATC 2 cut(s) 46, 257
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 257
MluCI AATT 4 cut(s) 110, 125, 237, 292
MmeI TCCRAC 2 cut(s) 154, 235
MnlI CCTC 6 cut(s) 52, 76, 115, 147, 195, 252
MroI TCCGGA 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 292
MvnI CGCG 1 cut(s) 246
NdeII GATC 2 cut(s) 46, 257
NlaIII CATG 1 cut(s) 221
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 31
NruI TCGCGA 1 cut(s) 246
OliI CACNNNNGTG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 3 cut(s) 57, 88, 118
PsuI RGATCY 1 cut(s) 257
RruI TCGCGA 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 101
SatI GCNGC 3 cut(s) 56, 87, 117
Sau3AI GATC 2 cut(s) 46, 257
SetI ASST 5 cut(s) 21, 33, 44, 57, 91
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 4 cut(s) 110, 125, 237, 292
SsiI CCGC 3 cut(s) 5, 99, 117
TasI AATT 4 cut(s) 110, 125, 237, 292
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 177
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 55, 86
Tsp45I GTSAC 1 cut(s) 31
XapI RAATTY 2 cut(s) 110, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.