pycom08g14480

Ubiquitin-fold modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013440
Physical Location & Seq
Forward (+)
13725468 .. 13727500
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14480.1

Sequence Viewer

Length: 297 bp
ATGGCGGGTGGTGGAAAGGTCTCCTTCAAAGTCACTCTAACCTCCGATCCGAAGCTCCCCTTCAAAGTGTTTAGCGTGCCGGAAGCAGCCCCTTTCACCGCCGTGCTGAAATTCGCGGCCGAGGAATTCAAAGTGCCTCCCCAAACCAGCGCTATCATCACCAACGATGGTGTCGGAATCAATCCTCAGCAAAGCGCAGGGAATGTATTCCTCAAGCATGGTTCTGAACTACGCCTGATTCCTCGAGATAGGGTTGGGGCTTTTGGAACAATGGACGCCGCATTAAAATCAAACTGA

Protein Analysis

99

Amino Acids

10.33

Weight (kDa)

9.52

Isoelectric Point (pI)

23.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ufm1 PF03671 6 - 80 1.5e-42 Ubiquitin fold modifier 1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77710
fragaria_vesca FvH4_2g26390
malus_domestica MD08G1169400.v1.1 MD15G1356000.v1.1
prunus_persica Prupe.1G503300_v2.0.a1 Prupe.1G503300_v2.0.a1
pyrus_communis pycom08g14480 pycom15g31800
rosa_chinensis RchiOBHm_Chr6g0294951
rosa_multiflora Rmu_sc0002700.1_g000040
rosa_roxburghii Rroxscaffold_7G00172800
rosa_rugosa Rorug06G0248600 Rorug06G0248800
rosa_samantha Rh6AG361800 Rh6BG369300 Rh6CG375800 Rh6DG362300
rosa_wichuraiana Rw6G031560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AciI CCGC 4 cut(s) 5, 99, 116, 279
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 2 cut(s) 110, 125
AcyI GRCGYC 1 cut(s) 276
AfeI AGCGCT 1 cut(s) 151
AgsI TTSAA 3 cut(s) 28, 64, 130
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 243
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 110, 125
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 152, 197
AsuHPI GGTGA 2 cut(s) 88, 151
AvaI CYCGRG 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 3 cut(s) 87, 117, 279
BlsI GCNGC 3 cut(s) 88, 118, 280
BmeT110I CYCGRG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 200
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 4 cut(s) 5, 99, 116, 279
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 116
BspPI GGATC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 46
BssNI GRCGYC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 197
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 120
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 98
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 2 cut(s) 152, 197
CseI GACGC 1 cut(s) 284
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 55, 89, 119, 260
CviKI_1 RGCY 4 cut(s) 55, 89, 119, 260
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 151
Eco52I CGGCCG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 125
FaeI CATG 1 cut(s) 221
FaiI YATR 1 cut(s) 219
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 44, 76
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 87, 117, 279
Fsp4HI GCNGC 3 cut(s) 87, 117, 279
GlaI GCGC 2 cut(s) 151, 196
GluI GCNGC 3 cut(s) 87, 117, 279
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 284
HhaI GCGC 2 cut(s) 152, 197
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 2 cut(s) 150, 195
HinP1I GCGC 2 cut(s) 150, 195
HinfI GANTC 2 cut(s) 177, 238
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 88, 151
Hpy188I TCNGA 4 cut(s) 46, 51, 176, 226
Hpy188III TCNNGA 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 34, 70
HpyF3I CTNAG 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 2 cut(s) 150, 195
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 4 cut(s) 93, 160, 183, 248
Lsp1109I GCAGC 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MluCI AATT 2 cut(s) 110, 125
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 6 cut(s) 52, 115, 147, 195, 221, 252
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 116
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 221
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 177, 238
PkrI GCNGC 3 cut(s) 88, 118, 280
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 3 cut(s) 87, 117, 279
Sau3AI GATC 1 cut(s) 46
SetI ASST 3 cut(s) 21, 44, 57
Sfr274I CTCGAG 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 212, 243
SmoI CTYRAG 2 cut(s) 212, 243
Sse9I AATT 2 cut(s) 110, 125
SsiI CCGC 4 cut(s) 5, 99, 116, 279
TaqI TCGA 1 cut(s) 244
TasI AATT 2 cut(s) 110, 125
TauI GCSGC 2 cut(s) 119, 281
TfiI GAWTC 2 cut(s) 177, 238
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 31
XapI RAATTY 2 cut(s) 110, 125
XhoI CTCGAG 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.