Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013440

Physical Location & Seq

Genomic Coordinates Reverse (-)

56228627 .. 56230814

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG375800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGGGTGGTGGAAAGGTGTCATTCAAGGTTACTCTAACCTCCGATCCAAAGCTGCCCTTCAAAGTGTTCGTACATCCCCTCTCTCAATTTCTATTCCAATTCCTCTTTCCTTGTTCGAATTCTAATAAATTAACCAAAAATTTCAGGTTTAGCGTTCCAGAGGCAGCCCCTTTCACCGCCGTGCTCAAATTCGCCGCCGAGGAATTCAAAGTGCCTCCCCAGACCAGCGCCATCATCACCAACGATGGTGTTGGAATTAACCCTCAGCAAAGTGCAGGCAATGTATTCCTCAAGCATGGTTCGGAACTGCGCCTAATTCCTCGCGATAGGGTTGGAGCTTTTGGGACAATCAACGCAGCATTACCATCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071569 GO:0071704 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ufm1

Protein Analysis

125

Amino Acids

13.52

Weight (kDa)

9.92

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufm1	PF03671	51 - 107	3.8e-31	Ubiquitin fold modifier 1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77710
fragaria_vesca	FvH4_2g26390
malus_domestica	MD08G1169400.v1.1 MD15G1356000.v1.1
prunus_persica	Prupe.1G503300_v2.0.a1 Prupe.1G503300_v2.0.a1
pyrus_communis	pycom08g14480 pycom15g31800
rosa_chinensis	RchiOBHm_Chr6g0294951
rosa_multiflora	Rmu_sc0002700.1_g000040
rosa_roxburghii	Rroxscaffold_7G00172800
rosa_rugosa	Rorug06G0248600 Rorug06G0248800
rosa_samantha	Rh6AG361800 Rh6BG369300 Rh6CG375800 Rh6DG362300
rosa_wichuraiana	Rw6G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	5, 180, 198
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	4 cut(s)	121, 142, 191, 206
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	28, 64, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	55, 341
AluI	AGCT	2 cut(s)	55, 341
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	55, 167, 359
ApoI	RAATTY	4 cut(s)	121, 142, 191, 206
AspLEI	GCGC	2 cut(s)	233, 315
AsuHPI	GGTGA	2 cut(s)	169, 232
AsuII	TTCGAA	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	42, 179, 371
BccI	CCATC	3 cut(s)	242, 242, 376
BceAI	ACGGC	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	4 cut(s)	56, 168, 198, 360
BlsI	GCNGC	4 cut(s)	57, 169, 199, 361
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	76, 368
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	42, 179, 371
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	46
Bsp68I	TCGCGA	1 cut(s)	327
BspACI	CCGC	3 cut(s)	5, 180, 198
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	327
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	76, 368
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	233, 315
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	42, 179, 371
BtsCI	GGATG	2 cut(s)	76, 368
BtuMI	TCGCGA	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	2 cut(s)	233, 315
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	3 cut(s)	55, 170, 341
CviKI_1	RGCY	3 cut(s)	55, 170, 341
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EcoRI	GAATTC	2 cut(s)	121, 206
FaeI	CATG	1 cut(s)	302
FaiI	YATR	1 cut(s)	300
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	56, 168, 198, 360
FokI	GGATG	2 cut(s)	63, 355
Fsp4HI	GCNGC	4 cut(s)	56, 168, 198, 360
GlaI	GCGC	2 cut(s)	232, 314
GluI	GCNGC	4 cut(s)	56, 168, 198, 360
HaeII	RGCGCY	1 cut(s)	234
HhaI	GCGC	2 cut(s)	233, 315
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	2 cut(s)	231, 313
HinP1I	GCGC	2 cut(s)	231, 313
HphI	GGTGA	2 cut(s)	169, 232
Hpy188I	TCNGA	2 cut(s)	46, 307
Hpy188III	TCNNGA	2 cut(s)	161, 326
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	2 cut(s)	231, 313
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	133, 174, 236, 241, 264
Lsp1109I	GCAGC	3 cut(s)	42, 179, 371
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	9 cut(s)	89, 101, 121, 131, 142, 191, 206, 258, 318
MmeI	TCCRAC	2 cut(s)	235, 316
MnlI	CCTC	9 cut(s)	52, 92, 116, 157, 196, 228, 276, 302, 333
MseI	TTAA	2 cut(s)	134, 261
MslI	CAYNNNNRTG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	327
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	302
NmeAIII	GCCGAG	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	327
NspV	TTCGAA	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	57, 169, 199, 361
RruI	TCGCGA	1 cut(s)	327
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	134, 261
SatI	GCNGC	4 cut(s)	56, 168, 198, 360
Sau3AI	GATC	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	21, 33, 44, 57, 152, 343
SfuI	TTCGAA	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	9 cut(s)	89, 101, 121, 131, 142, 191, 206, 258, 318
SsiI	CCGC	3 cut(s)	5, 180, 198
TaqI	TCGA	1 cut(s)	119
TasI	AATT	9 cut(s)	89, 101, 121, 131, 142, 191, 206, 258, 318
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	134, 261
Tru9I	TTAA	2 cut(s)	134, 261
TseI	GCWGC	3 cut(s)	55, 167, 359
XapI	RAATTY	4 cut(s)	121, 142, 191, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.