Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014538

Physical Location & Seq

Genomic Coordinates Reverse (-)

29282162 .. 29284480

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGGTTCCTACAGAGTCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCGTTTACCACTTCTAACGCCGGCGATTCTAGCTGGGACAAGATCTCATTCTTCCGTCACCGTTCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTCCTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGGAACTCTCACGGTCACTGCTCCGCTAAACTCCTTGGCCGATTCTCTTTCCAGTCTCTCTCCGAGAATCCTATGCTTGGTCCCTCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAAAGCTCTGACGGAGAATCATGAGATTTGGCGTATTTTGACATCTCCATGGCTGCACAGTGGATTATTTCATCTATTCATAAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAGTTTGGACCATTGAGGATTGCAGTCATATACTTCCTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGTTCGGAACATCCCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCTTTCTGCACTTGCAAAGAACTGGAATCTATATAACAGCAAGATTTCAGCCTTGGCGATAATATTCACTATCTTCACTGTGAATTTCCTGATAGGCTTTCTCCCTTTCATAGACAACTTTGCAAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACAACTGAGACAGATGCCTCCATCTCATAAGGGGAAATTGTTTGAAGATGATATGAACAGATCCACAAGGCTTAAAGAACAGTTTGACAGACCGGTATTAAGGATTATATGCCTGCTCGTGTTTTGTGGAATACTTGCCGGGGTTCTATTAGCAGCATGCTGGGGAGTCAATCTCAACCGTCATTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAAAAAATGGAGCTGCAGCGACATGACTACTTCCTGCGAGGTATATTCATCTAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

351

Amino Acids

39.31

Weight (kDa)

8.92

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	120 - 256	9.6e-30	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77860 AT1G77860
fragaria_vesca	FvH4_5g38430
malus_domestica	MD08G1173800.v1.1
prunus_persica	Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0240461
rosa_laevigata	RLG00000000677
rosa_multiflora	Rmu_sc0005327.1_g000015
rosa_roxburghii	Rroxscaffold_3G00219970
rosa_rugosa	Rorug07G0336300
rosa_samantha	Rh7AG490600 Rh7BG463300 Rh7CG506800 Rh7DG474400
rosa_wichuraiana	Rw7G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1002
AciI	CCGC	2 cut(s)	240, 303
AclI	AACGTT	1 cut(s)	311
AclWI	GGATC	1 cut(s)	831
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	293, 1002
AgeI	ACCGGT	1 cut(s)	868
AgsI	TTSAA	2 cut(s)	772, 821
AluBI	AGCT	3 cut(s)	90, 344, 1008
AluI	AGCT	3 cut(s)	90, 344, 1008
Alw26I	GTCTC	4 cut(s)	132, 157, 276, 778
AlwI	GGATC	1 cut(s)	831
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	5 cut(s)	391, 569, 929, 1008, 1011
ApoI	RAATTY	1 cut(s)	679
AsiGI	ACCGGT	1 cut(s)	868
AspS9I	GGNCC	2 cut(s)	296, 470
AsuC2I	CCSGG	2 cut(s)	217, 916
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	296, 470
BauI	CACGAG	1 cut(s)	893
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	5 cut(s)	378, 556, 941, 995, 1023
BccI	CCATC	2 cut(s)	559, 805
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	2 cut(s)	217, 916
BcoDI	GTCTC	4 cut(s)	132, 157, 276, 778
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	2 cut(s)	12, 1009
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	5 cut(s)	392, 570, 930, 1009, 1012
BlsI	GCNGC	5 cut(s)	393, 571, 931, 1010, 1013
Bme1390I	CCNGG	2 cut(s)	217, 916
Bme18I	GGWCC	2 cut(s)	296, 470
BmgT120I	GGNCC	2 cut(s)	296, 470
BmiI	GGNNCC	3 cut(s)	9, 298, 592
BmrFI	CCNGG	2 cut(s)	217, 916
BmsI	GCATC	1 cut(s)	780
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	933, 965
BpuMI	CCSGG	2 cut(s)	217, 916
Bsa29I	ATCGAT	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	5 cut(s)	250, 386, 648, 751, 915
BsaWI	WCCGGW	1 cut(s)	868
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 449, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 1002
Bse118I	RCCGGY	2 cut(s)	77, 868
Bse1I	ACTGG	2 cut(s)	268, 623
Bse3DI	GCAATG	1 cut(s)	958
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	5 cut(s)	250, 386, 648, 751, 915
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	293, 1002
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	2 cut(s)	268, 623
BseXI	GCAGC	5 cut(s)	378, 556, 941, 995, 1023
BseYI	CCCAGC	2 cut(s)	90, 936
BsgI	GTGCAG	2 cut(s)	377, 588
BshFI	GGCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	868
BshVI	ATCGAT	1 cut(s)	36
BsiSI	CCGG	4 cut(s)	78, 216, 869, 915
BslFI	GGGAC	2 cut(s)	107, 282
BslI	CCNNNNNNNGG	2 cut(s)	293, 1002
BsmAI	GTCTC	4 cut(s)	132, 157, 276, 778
BsmFI	GGGAC	2 cut(s)	107, 282
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	33, 99, 174, 836
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	2 cut(s)	240, 303
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	774
BspDI	ATCGAT	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	9, 298, 592
BspMAI	CTGCAG	1 cut(s)	1013
BspPI	GGATC	1 cut(s)	831
BsrDI	GCAATG	1 cut(s)	958
BsrFI	RCCGGY	2 cut(s)	77, 868
BsrI	ACTGG	2 cut(s)	268, 623
BssAI	RCCGGY	2 cut(s)	77, 868
BssECI	CCNNGG	5 cut(s)	250, 386, 648, 751, 915
BssMI	GATC	4 cut(s)	33, 99, 174, 836
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	893
BssT1I	CCWWGG	4 cut(s)	250, 386, 648, 751
Bst2BI	CACGAG	1 cut(s)	893
Bst4CI	ACNGT	8 cut(s)	119, 230, 398, 465, 676, 858, 956, 986
Bst6I	CTCTTC	2 cut(s)	188, 565
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	79, 890, 934
BstDEI	CTNAG	1 cut(s)	782
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	546
BstKTI	GATC	4 cut(s)	36, 102, 177, 839
BstMAI	GTCTC	4 cut(s)	132, 157, 276, 778
BstMBI	GATC	4 cut(s)	33, 99, 174, 836
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	936
BstSCI	CCNGG	2 cut(s)	215, 914
BstSFI	CTRYAG	2 cut(s)	12, 1009
BstV1I	GCAGC	5 cut(s)	378, 556, 941, 995, 1023
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	99, 836
BstYI	RGATCY	2 cut(s)	99, 836
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	232, 403, 672
Cac8I	GCNNGC	3 cut(s)	79, 890, 934
CciI	TCATGA	1 cut(s)	358
Cfr10I	RCCGGY	2 cut(s)	77, 868
Cfr13I	GGNCC	2 cut(s)	296, 470
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	2 cut(s)	37, 190
CspAI	ACCGGT	1 cut(s)	868
CviAII	CATG	6 cut(s)	359, 387, 454, 595, 933, 1018
DdeI	CTNAG	1 cut(s)	782
DpnI	GATC	4 cut(s)	35, 101, 176, 838
DpnII	GATC	4 cut(s)	33, 99, 174, 836
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	188, 565
EarI	CTCTTC	2 cut(s)	188, 565
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	4 cut(s)	250, 386, 648, 751
Eco47I	GGWCC	2 cut(s)	296, 470
Eco57I	CTGAAG	1 cut(s)	155
EcoT14I	CCWWGG	4 cut(s)	250, 386, 648, 751
ErhI	CCWWGG	4 cut(s)	250, 386, 648, 751
FaeI	CATG	6 cut(s)	362, 390, 457, 598, 936, 1021
FaqI	GGGAC	2 cut(s)	107, 282
FatI	CATG	6 cut(s)	358, 386, 453, 594, 932, 1017
FauNDI	CATATG	1 cut(s)	321
Fnu4HI	GCNGC	5 cut(s)	392, 570, 930, 1009, 1012
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	5 cut(s)	392, 570, 930, 1009, 1012
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	5 cut(s)	392, 570, 930, 1009, 1012
GsaI	CCCAGC	2 cut(s)	94, 940
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	4 cut(s)	78, 216, 869, 915
HgaI	GACGC	2 cut(s)	37, 190
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	362, 390, 457, 598, 936, 1021
HincII	GTYRAC	2 cut(s)	205, 982
HindII	GTYRAC	2 cut(s)	205, 982
HinfI	GANTC	8 cut(s)	17, 83, 258, 283, 355, 622, 744, 942
HpaII	CCGG	4 cut(s)	78, 216, 869, 915
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	4 cut(s)	63, 122, 205, 982
Hpy188I	TCNGA	4 cut(s)	174, 280, 348, 543
Hpy188III	TCNNGA	3 cut(s)	359, 685, 741
Hpy8I	GTNNAC	4 cut(s)	63, 122, 205, 982
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4III	ACNGT	8 cut(s)	119, 230, 398, 465, 676, 858, 956, 986
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	6 cut(s)	394, 485, 605, 611, 719, 1011
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	782
HpySE526I	ACGT	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	362, 390, 457, 598, 936, 1021
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	33, 99, 174, 836
LmnI	GCTCC	5 cut(s)	218, 242, 457, 590, 1005
Lsp1109I	GCAGC	5 cut(s)	378, 556, 941, 995, 1023
LweI	GCATC	1 cut(s)	780
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	3 cut(s)	113, 190, 230
MalI	GATC	4 cut(s)	35, 101, 176, 838
MboI	GATC	4 cut(s)	33, 99, 174, 836
MboII	GAAGA	8 cut(s)	100, 151, 158, 161, 175, 552, 661, 833
MflI	RGATCY	2 cut(s)	99, 836
MluCI	AATT	2 cut(s)	679, 812
MlyI	GAGTC	2 cut(s)	26, 951
MmeI	TCCRAC	1 cut(s)	1016
MnlI	CCTC	9 cut(s)	191, 310, 316, 320, 471, 509, 758, 804, 1027
MreI	CGCCGGCG	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	77
MseI	TTAA	2 cut(s)	849, 875
MslI	CAYNNNNRTG	1 cut(s)	385
MspI	CCGG	4 cut(s)	78, 216, 869, 915
MspR9I	CCNGG	2 cut(s)	217, 916
MwoI	GCNNNNNNNGC	1 cut(s)	87
NaeI	GCCGGC	1 cut(s)	79
NciI	CCSGG	2 cut(s)	217, 916
NcoI	CCATGG	1 cut(s)	386
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	4 cut(s)	33, 99, 174, 836
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	6 cut(s)	362, 390, 457, 598, 936, 1021
NlaIV	GGNNCC	3 cut(s)	9, 298, 592
NmuCI	GTSAC	2 cut(s)	113, 230
NspI	RCATGY	1 cut(s)	936
PaeI	GCATGC	1 cut(s)	936
PagI	TCATGA	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	6 cut(s)	83, 258, 283, 355, 622, 744
PflMI	CCANNNNNTGG	1 cut(s)	1002
PfoI	TCCNGGA	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	868
PkrI	GCNGC	5 cut(s)	393, 571, 931, 1010, 1013
PleI	GAGTC	2 cut(s)	25, 950
PpsI	GAGTC	2 cut(s)	25, 950
Psp1406I	AACGTT	1 cut(s)	311
PspFI	CCCAGC	2 cut(s)	90, 936
PspN4I	GGNNCC	3 cut(s)	9, 298, 592
PspPI	GGNCC	2 cut(s)	296, 470
PstI	CTGCAG	1 cut(s)	1013
PsuI	RGATCY	2 cut(s)	99, 836
RseI	CAYNNNNRTG	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	849, 875
SatI	GCNGC	5 cut(s)	392, 570, 930, 1009, 1012
Sau3AI	GATC	4 cut(s)	33, 99, 174, 836
Sau96I	GGNCC	2 cut(s)	296, 470
SchI	GAGTC	2 cut(s)	26, 951
ScrFI	CCNGG	2 cut(s)	217, 916
SetI	ASST	7 cut(s)	9, 92, 314, 331, 346, 1010, 1038
SfaNI	GCATC	1 cut(s)	780
SfcI	CTRYAG	2 cut(s)	12, 1009
SgrAI	CRCCGGYG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	296, 470
SmiMI	CAYNNNNRTG	1 cut(s)	385
SphI	GCATGC	1 cut(s)	936
Sse9I	AATT	2 cut(s)	679, 812
SsiI	CCGC	2 cut(s)	240, 303
SspI	AATATT	2 cut(s)	660, 724
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	215, 914
StyI	CCWWGG	4 cut(s)	250, 386, 648, 751
TaaI	ACNGT	8 cut(s)	119, 230, 398, 465, 676, 858, 956, 986
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	679, 812
TfiI	GAWTC	6 cut(s)	83, 258, 283, 355, 622, 744
Tru1I	TTAA	2 cut(s)	849, 875
Tru9I	TTAA	2 cut(s)	849, 875
TscAI	CASTG	3 cut(s)	239, 403, 679
TseFI	GTSAC	2 cut(s)	113, 230
TseI	GCWGC	5 cut(s)	391, 569, 929, 1008, 1011
Tsp45I	GTSAC	2 cut(s)	113, 230
TspDTI	ATGAA	7 cut(s)	54, 398, 406, 694, 724, 845, 1032
TspGWI	ACGGA	3 cut(s)	101, 145, 365
TspRI	CASTG	3 cut(s)	239, 403, 679
Van91I	CCANNNNNTGG	1 cut(s)	1002
VpaK11BI	GGWCC	2 cut(s)	296, 470
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	936
XcmI	CCANNNNNNNNNTGG	1 cut(s)	999
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.