Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014538

Physical Location & Seq

Genomic Coordinates Reverse (-)

36884161 .. 36885689

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0336300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCCTCCACAATTTTCAGAAGCTTTCAAACCCACCCTTTTGTGTTCCATCCCACCACATTACTCAGAAGAAAGAATGTTCTTTTGTATTGTACAATGAGAAGTCAACAAACCCAGACAGCCACCCAAGAGAAGGTTAAGCCACAAGTGAAAGTTTCTAACTTGAACCCGAATAAGAAGCTGGAGAATATCTCGAAGGACTATGAAGCAGTCATAGGTATCGAAACCCATGTCCAGCTATCTACTCAGACCAAGGCCTTTTGTAGTTGCCCTTATAATTACGGCTCTCAACCAAACACTAGTATTTGCCCCATTTGTATGGGTCTGCCTGGTGCTTTACCGATTTTGAACTTTAAGGTCATTGAGTCTGCTGTGAAAGTTGGGCTTGCACTCAATTGCAAATTGGCAATGAACTCGAAGTTTGATAGGAAACAATACTTTTACGCGGACCTTCCAAAGGGGTACCAAATATCCCAGTTTGATGTTCCAATTGCGACCGGTAGCTACATTGATTTGGATATTCCAGTAGAGTTTGGTGGTGGGCATAGGAAGTTTGGCATTACAAGAGTTCACATTGAAGAGGATGCAGGGAAGCTGATGCATTCAGACGATGGAAGTTACTCACAGGAAAGTGCATTTCGCTTTGTTGATCTAAATAGAGCGGGTGTTCCCTTGCTTGAGATTGTTTCTGAACCTGATATGAGAAATGGTATTGAAGCTGCAGAATATGCTGCAGAAATACAGAGGGTGGTTCGGTATTTGGGAGTGAGTAATGGCAATATGCAAGAAGGTTCACTTCGTTGTGATGTCAATGTTTCTATTCGACCAATTGGGCAATTACAGTTTGGGACGAAGGCAAGTAGCTTTTACTCATTGATTTATTTTGTTAGTATACAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

300

Amino Acids

33.55

Weight (kDa)

8.74

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	71 - 285	6.2e-83	GatB/GatE catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77860 AT1G77860
fragaria_vesca	FvH4_5g38430
malus_domestica	MD08G1173800.v1.1
prunus_persica	Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0240461
rosa_laevigata	RLG00000000677
rosa_multiflora	Rmu_sc0005327.1_g000015
rosa_roxburghii	Rroxscaffold_3G00219970
rosa_rugosa	Rorug07G0336300
rosa_samantha	Rh7AG490600 Rh7BG463300 Rh7CG506800 Rh7DG474400
rosa_wichuraiana	Rw7G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AccBSI	CCGCTC	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	892
AccII	CGCG	1 cut(s)	446
AciI	CCGC	2 cut(s)	446, 662
AfaI	GTAC	2 cut(s)	94, 464
AfiI	CCNNNNNNNGG	2 cut(s)	133, 457
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	29, 166, 349, 578, 716
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	7 cut(s)	24, 181, 238, 504, 595, 719, 864
AluI	AGCT	7 cut(s)	24, 181, 238, 504, 595, 719, 864
AoxI	GGCC	2 cut(s)	3, 255
ApeKI	GCWGC	2 cut(s)	719, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AsiGI	ACCGGT	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	706, 718
BccI	CCATC	2 cut(s)	57, 605
BceAI	ACGGC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	330
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	2 cut(s)	720, 732
BisI	GCNGC	2 cut(s)	720, 732
BlsI	GCNGC	2 cut(s)	721, 733
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	574, 588
BmuI	ACTGGG	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	698
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 457
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	475, 524
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	49, 589
BseLI	CCNNNNNNNGG	2 cut(s)	133, 457
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	79, 260
BseNI	ACTGG	2 cut(s)	475, 524
BseXI	GCAGC	2 cut(s)	706, 718
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	5, 257
BshNI	GGYRCC	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	2 cut(s)	133, 457
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	5, 257
Bsp1407I	TGTACA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	649
BspACI	CCGC	2 cut(s)	446, 662
BspANI	GGCC	2 cut(s)	5, 257
BspCNI	CTCAG	2 cut(s)	78, 259
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	2 cut(s)	724, 736
BspT107I	GGYRCC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	497
BsrGI	TGTACA	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	475, 524
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	649
BssNAI	GTATAC	1 cut(s)	893
BssT1I	CCWWGG	1 cut(s)	252
Bst1107I	GTATAC	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	843
Bst6I	CTCTTC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	65, 246
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	49, 589
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	649
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	1 cut(s)	728
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	2 cut(s)	720, 732
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	706, 718
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstZ17I	GTATAC	1 cut(s)	893
BsuRI	GGCC	2 cut(s)	5, 257
BtsCI	GGATG	2 cut(s)	49, 589
Cac8I	GCNNGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	93, 463
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	2 cut(s)	93, 463
DdeI	CTNAG	2 cut(s)	65, 246
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	233
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 780, 812
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	1 cut(s)	229
FauI	CCCGC	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	2 cut(s)	720, 732
FokI	GGATG	2 cut(s)	36, 596
Fsp4HI	GCNGC	2 cut(s)	720, 732
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	720, 732
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	5, 257
HapII	CCGG	1 cut(s)	498
Hin1II	CATG	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	498
Hpy166II	GTNNAC	4 cut(s)	107, 571, 794, 893
Hpy188I	TCNGA	5 cut(s)	20, 68, 249, 607, 691
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	4 cut(s)	107, 571, 794, 893
HpyAV	CCTTC	5 cut(s)	127, 190, 461, 782, 847
HpyCH4III	ACNGT	1 cut(s)	843
HpyCH4V	TGCA	8 cut(s)	389, 399, 587, 601, 635, 722, 734, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	728
HpyF3I	CTNAG	2 cut(s)	65, 246
Hsp92II	CATG	1 cut(s)	233
KpnI	GGTACC	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	649
Lsp1109I	GCAGC	2 cut(s)	706, 718
LweI	GCATC	2 cut(s)	574, 588
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	1 cut(s)	651
MbiI	CCGCTC	1 cut(s)	662
MboI	GATC	1 cut(s)	649
MboII	GAAGA	2 cut(s)	81, 590
MfeI	CAATTG	3 cut(s)	394, 489, 828
MluCI	AATT	7 cut(s)	12, 277, 394, 401, 489, 828, 836
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	3 cut(s)	16, 574, 738
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	2 cut(s)	138, 354
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	3 cut(s)	394, 489, 828
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	728
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	601
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	721, 733
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	448
PstI	CTGCAG	2 cut(s)	724, 736
RsaI	GTAC	2 cut(s)	94, 464
RsaNI	GTAC	2 cut(s)	93, 463
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	138, 354
SatI	GCNGC	2 cut(s)	720, 732
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	330
SfaNI	GCATC	2 cut(s)	574, 588
SfcI	CTRYAG	2 cut(s)	720, 732
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	7 cut(s)	12, 277, 394, 401, 489, 828, 836
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	446, 662
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	843
TaqI	TCGA	4 cut(s)	194, 222, 416, 823
TasI	AATT	7 cut(s)	12, 277, 394, 401, 489, 828, 836
TatI	WGTACW	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	138, 354
Tru9I	TTAA	2 cut(s)	138, 354
TseI	GCWGC	2 cut(s)	719, 731
TspDTI	ATGAA	2 cut(s)	219, 425
VpaK11BI	GGWCC	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	892
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.