Inactive rhomboid protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77860 AT1G77860 |
| fragaria_vesca | FvH4_5g38430 |
| malus_domestica | MD08G1173800.v1.1 |
| prunus_persica | Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0240461 |
| rosa_laevigata | RLG00000000677 |
| rosa_multiflora | Rmu_sc0005327.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00219970 |
| rosa_rugosa | Rorug07G0336300 |
| rosa_samantha | Rh7AG490600 Rh7BG463300 Rh7CG506800 Rh7DG474400 |
| rosa_wichuraiana | Rw7G041120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 914 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1047 |
| AccBSI | CCGCTC | 1 cut(s) | 316 |
| AccI | GTMKAC | 1 cut(s) | 9 |
| AccIII | TCCGGA | 1 cut(s) | 608 |
| AciI | CCGC | 5 cut(s) | 80, 151, 169, 314, 1008 |
| AclWI | GGATC | 1 cut(s) | 805 |
| AcoI | YGGCCR | 2 cut(s) | 3, 231 |
| AcsI | RAATTY | 3 cut(s) | 489, 1069, 1129 |
| AcuI | CTGAAG | 2 cut(s) | 35, 305 |
| AcvI | CACGTG | 1 cut(s) | 186 |
| AcyI | GRCGYC | 1 cut(s) | 412 |
| AdeI | CACNNNGTG | 1 cut(s) | 457 |
| AfaI | GTAC | 3 cut(s) | 559, 671, 1004 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 297, 335, 599, 1047 |
| AflIII | ACRYGT | 1 cut(s) | 183 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 122, 154 |
| Alw21I | GWGCWC | 2 cut(s) | 373, 616 |
| Alw26I | GTCTC | 5 cut(s) | 270, 715, 934, 1053, 1073 |
| AlwI | GGATC | 1 cut(s) | 805 |
| Aor13HI | TCCGGA | 1 cut(s) | 608 |
| AoxI | GGCC | 7 cut(s) | 3, 30, 231, 288, 337, 850, 911 |
| ApeKI | GCWGC | 3 cut(s) | 104, 569, 1053 |
| ApoI | RAATTY | 3 cut(s) | 489, 1069, 1129 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 397, 429 |
| AspLEI | GCGC | 1 cut(s) | 838 |
| AspS9I | GGNCC | 2 cut(s) | 338, 512 |
| AsuHPI | GGTGA | 2 cut(s) | 85, 1141 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 549, 582 |
| BalI | TGGCCA | 1 cut(s) | 233 |
| BanII | GRGCYC | 2 cut(s) | 373, 616 |
| BbrPI | CACGTG | 1 cut(s) | 186 |
| Bbv12I | GWGCWC | 2 cut(s) | 373, 616 |
| BbvI | GCAGC | 3 cut(s) | 91, 556, 1040 |
| BccI | CCATC | 5 cut(s) | 22, 49, 180, 455, 601 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 86, 120 |
| BclI | TGATCA | 1 cut(s) | 459 |
| BcoDI | GTCTC | 5 cut(s) | 270, 715, 934, 1053, 1073 |
| BfaI | CTAG | 1 cut(s) | 1167 |
| BfmI | CTRYAG | 2 cut(s) | 919, 1054 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 230 |
| BisI | GCNGC | 5 cut(s) | 105, 169, 314, 570, 1054 |
| BlsI | GCNGC | 5 cut(s) | 106, 170, 315, 571, 1055 |
| BmcAI | AGTACT | 1 cut(s) | 1004 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmgT120I | GGNCC | 2 cut(s) | 338, 512 |
| BmiI | GGNNCC | 2 cut(s) | 445, 788 |
| BmrI | ACTGGG | 1 cut(s) | 670 |
| BmsI | GCATC | 1 cut(s) | 704 |
| BmuI | ACTGGG | 1 cut(s) | 670 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 250, 282 |
| BpmI | CTGGAG | 2 cut(s) | 277, 1069 |
| Bpu10I | CCTNAGC | 1 cut(s) | 467 |
| BpuEI | CTTGAG | 2 cut(s) | 745, 1146 |
| BsaAI | YACGTR | 1 cut(s) | 186 |
| BsaBI | GATNNNNATC | 1 cut(s) | 864 |
| BsaHI | GRCGYC | 1 cut(s) | 412 |
| BsaI | GGTCTC | 1 cut(s) | 1073 |
| BsaJI | CCNNGG | 5 cut(s) | 237, 334, 730, 819, 1083 |
| BsaWI | WCCGGW | 1 cut(s) | 608 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 491, 521 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 297, 335, 599, 1047 |
| Bse1I | ACTGG | 4 cut(s) | 665, 813, 914, 1000 |
| Bse3DI | GCAATG | 1 cut(s) | 1099 |
| Bse8I | GATNNNNATC | 1 cut(s) | 864 |
| BseAI | TCCGGA | 1 cut(s) | 608 |
| BseDI | CCNNGG | 5 cut(s) | 237, 334, 730, 819, 1083 |
| BseGI | GGATG | 2 cut(s) | 447, 968 |
| BseJI | GATNNNNATC | 1 cut(s) | 864 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 297, 335, 599, 1047 |
| BseMI | GCAATG | 1 cut(s) | 1099 |
| BseNI | ACTGG | 4 cut(s) | 665, 813, 914, 1000 |
| BseRI | GAGGAG | 1 cut(s) | 323 |
| BseXI | GCAGC | 3 cut(s) | 91, 556, 1040 |
| BsgI | GTGCAG | 3 cut(s) | 419, 555, 630 |
| BshFI | GGCC | 7 cut(s) | 5, 32, 233, 290, 339, 852, 913 |
| BsiHKAI | GWGCWC | 2 cut(s) | 373, 616 |
| BsiSI | CCGG | 2 cut(s) | 441, 609 |
| BslFI | GGGAC | 2 cut(s) | 801, 1019 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 297, 335, 599, 1047 |
| BsmAI | GTCTC | 5 cut(s) | 270, 715, 934, 1053, 1073 |
| BsmFI | GGGAC | 2 cut(s) | 801, 1019 |
| BsnI | GGCC | 7 cut(s) | 5, 32, 233, 290, 339, 852, 913 |
| Bso31I | GGTCTC | 1 cut(s) | 1073 |
| Bsp1286I | GDGCHC | 2 cut(s) | 373, 616 |
| Bsp13I | TCCGGA | 1 cut(s) | 608 |
| Bsp1407I | TGTACA | 1 cut(s) | 669 |
| Bsp143I | GATC | 3 cut(s) | 459, 797, 865 |
| Bsp19I | CCATGG | 2 cut(s) | 237, 1083 |
| BspACI | CCGC | 5 cut(s) | 80, 151, 169, 314, 1008 |
| BspANI | GGCC | 7 cut(s) | 5, 32, 233, 290, 339, 852, 913 |
| BspEI | TCCGGA | 1 cut(s) | 608 |
| BspLI | GGNNCC | 2 cut(s) | 445, 788 |
| BspMAI | CTGCAG | 1 cut(s) | 1058 |
| BspPI | GGATC | 1 cut(s) | 805 |
| BspQI | GCTCTTC | 1 cut(s) | 378 |
| BspTNI | GGTCTC | 1 cut(s) | 1073 |
| BsrBI | CCGCTC | 1 cut(s) | 316 |
| BsrDI | GCAATG | 1 cut(s) | 1099 |
| BsrGI | TGTACA | 1 cut(s) | 669 |
| BsrI | ACTGG | 4 cut(s) | 665, 813, 914, 1000 |
| BssECI | CCNNGG | 5 cut(s) | 237, 334, 730, 819, 1083 |
| BssMI | GATC | 3 cut(s) | 459, 797, 865 |
| BssNI | GRCGYC | 1 cut(s) | 412 |
| BssT1I | CCWWGG | 4 cut(s) | 237, 730, 819, 1083 |
| Bst4CI | ACNGT | 4 cut(s) | 158, 278, 385, 1101 |
| Bst6I | CTCTTC | 1 cut(s) | 378 |
| BstACI | GRCGYC | 1 cut(s) | 412 |
| BstAUI | TGTACA | 1 cut(s) | 669 |
| BstBAI | YACGTR | 1 cut(s) | 186 |
| BstC8I | GCNNGC | 3 cut(s) | 438, 957, 1090 |
| BstDEI | CTNAG | 1 cut(s) | 467 |
| BstDSI | CCRYGG | 2 cut(s) | 237, 1083 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 295 |
| BstF5I | GGATG | 2 cut(s) | 447, 968 |
| BstHHI | GCGC | 1 cut(s) | 838 |
| BstKTI | GATC | 3 cut(s) | 462, 800, 868 |
| BstMAI | GTCTC | 5 cut(s) | 270, 715, 934, 1053, 1073 |
| BstMBI | GATC | 3 cut(s) | 459, 797, 865 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 79, 196, 230, 771, 1053 |
| BstSFI | CTRYAG | 2 cut(s) | 919, 1054 |
| BstV1I | GCAGC | 3 cut(s) | 91, 556, 1040 |
| BstX2I | RGATCY | 1 cut(s) | 797 |
| BstYI | RGATCY | 1 cut(s) | 797 |
| BsuRI | GGCC | 7 cut(s) | 5, 32, 233, 290, 339, 852, 913 |
| BtgI | CCRYGG | 2 cut(s) | 237, 1083 |
| BtsCI | GGATG | 2 cut(s) | 447, 968 |
| BtsI | GCAGTG | 1 cut(s) | 1192 |
| BtsIMutI | CAGTG | 2 cut(s) | 647, 1192 |
| Cac8I | GCNNGC | 3 cut(s) | 438, 957, 1090 |
| CfoI | GCGC | 1 cut(s) | 838 |
| Cfr13I | GGNCC | 2 cut(s) | 338, 512 |
| CseI | GACGC | 1 cut(s) | 401 |
| Csp6I | GTAC | 3 cut(s) | 558, 670, 1003 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 389, 424 |
| CviAII | CATG | 8 cut(s) | 229, 238, 269, 429, 856, 994, 1063, 1084 |
| CviQI | GTAC | 3 cut(s) | 558, 670, 1003 |
| DdeI | CTNAG | 1 cut(s) | 467 |
| DpnI | GATC | 3 cut(s) | 461, 799, 867 |
| DpnII | GATC | 3 cut(s) | 459, 797, 865 |
| DraIII | CACNNNGTG | 1 cut(s) | 457 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 914 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 914 |
| EaeI | YGGCCR | 2 cut(s) | 3, 231 |
| Eam1104I | CTCTTC | 1 cut(s) | 378 |
| EarI | CTCTTC | 1 cut(s) | 378 |
| Ecl136II | GAGCTC | 2 cut(s) | 371, 614 |
| Eco130I | CCWWGG | 4 cut(s) | 237, 730, 819, 1083 |
| Eco147I | AGGCCT | 2 cut(s) | 290, 852 |
| Eco24I | GRGCYC | 2 cut(s) | 373, 616 |
| Eco31I | GGTCTC | 1 cut(s) | 1073 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco53kI | GAGCTC | 2 cut(s) | 371, 614 |
| Eco57I | CTGAAG | 2 cut(s) | 35, 305 |
| Eco72I | CACGTG | 1 cut(s) | 186 |
| EcoICRI | GAGCTC | 2 cut(s) | 371, 614 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 295 |
| EcoRI | GAATTC | 1 cut(s) | 489 |
| EcoT14I | CCWWGG | 4 cut(s) | 237, 730, 819, 1083 |
| EcoT38I | GRGCYC | 2 cut(s) | 373, 616 |
| ErhI | CCWWGG | 4 cut(s) | 237, 730, 819, 1083 |
| FaeI | CATG | 8 cut(s) | 232, 241, 272, 432, 859, 997, 1066, 1087 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 122, 154 |
| FaqI | GGGAC | 2 cut(s) | 801, 1019 |
| FatI | CATG | 8 cut(s) | 228, 237, 268, 428, 855, 993, 1062, 1083 |
| FauI | CCCGC | 2 cut(s) | 158, 1001 |
| FbaI | TGATCA | 1 cut(s) | 459 |
| FblI | GTMKAC | 1 cut(s) | 9 |
| Fnu4HI | GCNGC | 5 cut(s) | 105, 169, 314, 570, 1054 |
| FokI | GGATG | 2 cut(s) | 434, 975 |
| FriOI | GRGCYC | 2 cut(s) | 373, 616 |
| Fsp4HI | GCNGC | 5 cut(s) | 105, 169, 314, 570, 1054 |
| FspBI | CTAG | 1 cut(s) | 1167 |
| GlaI | GCGC | 1 cut(s) | 837 |
| GluI | GCNGC | 5 cut(s) | 105, 169, 314, 570, 1054 |
| GsuI | CTGGAG | 2 cut(s) | 277, 1069 |
| HaeIII | GGCC | 7 cut(s) | 5, 32, 233, 290, 339, 852, 913 |
| HapII | CCGG | 2 cut(s) | 441, 609 |
| HgaI | GACGC | 1 cut(s) | 401 |
| HhaI | GCGC | 1 cut(s) | 838 |
| Hin1I | GRCGYC | 1 cut(s) | 412 |
| Hin1II | CATG | 8 cut(s) | 232, 241, 272, 432, 859, 997, 1066, 1087 |
| Hin6I | GCGC | 1 cut(s) | 836 |
| HinP1I | GCGC | 1 cut(s) | 836 |
| HincII | GTYRAC | 4 cut(s) | 10, 247, 751, 1104 |
| HindII | GTYRAC | 4 cut(s) | 10, 247, 751, 1104 |
| HindIII | AAGCTT | 1 cut(s) | 47 |
| HinfI | GANTC | 2 cut(s) | 98, 652 |
| HpaII | CCGG | 2 cut(s) | 441, 609 |
| HphI | GGTGA | 2 cut(s) | 85, 1141 |
| Hpy166II | GTNNAC | 6 cut(s) | 10, 247, 672, 684, 751, 1104 |
| Hpy188I | TCNGA | 5 cut(s) | 54, 285, 322, 657, 797 |
| Hpy188III | TCNNGA | 1 cut(s) | 609 |
| Hpy8I | GTNNAC | 6 cut(s) | 10, 247, 672, 684, 751, 1104 |
| Hpy99I | CGWCG | 4 cut(s) | 11, 162, 224, 381 |
| HpyAV | CCTTC | 6 cut(s) | 43, 148, 235, 280, 351, 1047 |
| HpyCH4III | ACNGT | 4 cut(s) | 158, 278, 385, 1101 |
| HpyCH4IV | ACGT | 2 cut(s) | 185, 560 |
| HpyCH4V | TGCA | 6 cut(s) | 436, 572, 647, 982, 1056, 1185 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 79, 196, 230, 771, 1053 |
| HpyF3I | CTNAG | 1 cut(s) | 467 |
| HpySE526I | ACGT | 2 cut(s) | 185, 560 |
| Hsp92I | GRCGYC | 1 cut(s) | 412 |
| Hsp92II | CATG | 8 cut(s) | 232, 241, 272, 432, 859, 997, 1066, 1087 |
| HspAI | GCGC | 1 cut(s) | 836 |
| Kpn2I | TCCGGA | 1 cut(s) | 608 |
| Ksp22I | TGATCA | 1 cut(s) | 459 |
| Kzo9I | GATC | 3 cut(s) | 459, 797, 865 |
| LguI | GCTCTTC | 1 cut(s) | 378 |
| LmnI | GCTCC | 7 cut(s) | 258, 368, 443, 499, 611, 632, 1050 |
| Lsp1109I | GCAGC | 3 cut(s) | 91, 556, 1040 |
| LweI | GCATC | 1 cut(s) | 704 |
| MaeI | CTAG | 1 cut(s) | 1167 |
| MaeII | ACGT | 2 cut(s) | 185, 560 |
| MaeIII | GTNAC | 1 cut(s) | 624 |
| MalI | GATC | 3 cut(s) | 461, 799, 867 |
| MbiI | CCGCTC | 1 cut(s) | 316 |
| MboI | GATC | 3 cut(s) | 459, 797, 865 |
| MboII | GAAGA | 7 cut(s) | 82, 133, 203, 365, 597, 929, 1133 |
| MflI | RGATCY | 1 cut(s) | 797 |
| MhlI | GDGCHC | 2 cut(s) | 373, 616 |
| MlsI | TGGCCA | 1 cut(s) | 233 |
| MluCI | AATT | 5 cut(s) | 489, 721, 754, 1069, 1129 |
| MluNI | TGGCCA | 1 cut(s) | 233 |
| MmeI | TCCRAC | 2 cut(s) | 466, 885 |
| Mox20I | TGGCCA | 1 cut(s) | 233 |
| MroI | TCCGGA | 1 cut(s) | 608 |
| MscI | TGGCCA | 1 cut(s) | 233 |
| MseI | TTAA | 3 cut(s) | 389, 530, 990 |
| MslI | CAYNNNNRTG | 2 cut(s) | 427, 992 |
| Msp20I | TGGCCA | 1 cut(s) | 233 |
| MspA1I | CMGCKG | 1 cut(s) | 104 |
| MspI | CCGG | 2 cut(s) | 441, 609 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 79, 196, 230, 771, 1053 |
| NcoI | CCATGG | 2 cut(s) | 237, 1083 |
| NdeII | GATC | 3 cut(s) | 459, 797, 865 |
| NlaIII | CATG | 8 cut(s) | 232, 241, 272, 432, 859, 997, 1066, 1087 |
| NlaIV | GGNNCC | 2 cut(s) | 445, 788 |
| NmeAIII | GCCGAG | 1 cut(s) | 315 |
| PceI | AGGCCT | 2 cut(s) | 290, 852 |
| PciSI | GCTCTTC | 1 cut(s) | 378 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 172 |
| PfeI | GAWTC | 2 cut(s) | 98, 652 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1047 |
| PkrI | GCNGC | 5 cut(s) | 106, 170, 315, 571, 1055 |
| PmaCI | CACGTG | 1 cut(s) | 186 |
| PmlI | CACGTG | 1 cut(s) | 186 |
| Ppu21I | YACGTR | 1 cut(s) | 186 |
| Psp124BI | GAGCTC | 2 cut(s) | 373, 616 |
| PspCI | CACGTG | 1 cut(s) | 186 |
| PspN4I | GGNNCC | 2 cut(s) | 445, 788 |
| PspPI | GGNCC | 2 cut(s) | 338, 512 |
| PstI | CTGCAG | 1 cut(s) | 1058 |
| PsuI | RGATCY | 1 cut(s) | 797 |
| PvuII | CAGCTG | 1 cut(s) | 104 |
| RsaI | GTAC | 3 cut(s) | 559, 671, 1004 |
| RsaNI | GTAC | 3 cut(s) | 558, 670, 1003 |
| RseI | CAYNNNNRTG | 2 cut(s) | 427, 992 |
| SacI | GAGCTC | 2 cut(s) | 373, 616 |
| SalI | GTCGAC | 1 cut(s) | 8 |
| SapI | GCTCTTC | 1 cut(s) | 378 |
| SaqAI | TTAA | 3 cut(s) | 389, 530, 990 |
| SatI | GCNGC | 5 cut(s) | 105, 169, 314, 570, 1054 |
| Sau3AI | GATC | 3 cut(s) | 459, 797, 865 |
| Sau96I | GGNCC | 2 cut(s) | 338, 512 |
| ScaI | AGTACT | 1 cut(s) | 1004 |
| SduI | GDGCHC | 2 cut(s) | 373, 616 |
| SfaNI | GCATC | 1 cut(s) | 704 |
| SfcI | CTRYAG | 2 cut(s) | 919, 1054 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 427, 992 |
| SmlI | CTYRAG | 2 cut(s) | 760, 1161 |
| SmoI | CTYRAG | 2 cut(s) | 760, 1161 |
| Sse9I | AATT | 5 cut(s) | 489, 721, 754, 1069, 1129 |
| SseBI | AGGCCT | 2 cut(s) | 290, 852 |
| SsiI | CCGC | 5 cut(s) | 80, 151, 169, 314, 1008 |
| SspI | AATATT | 1 cut(s) | 705 |
| SspMI | CTAG | 1 cut(s) | 1167 |
| SstI | GAGCTC | 2 cut(s) | 373, 616 |
| StuI | AGGCCT | 2 cut(s) | 290, 852 |
| StyI | CCWWGG | 4 cut(s) | 237, 730, 819, 1083 |
| TaaI | ACNGT | 4 cut(s) | 158, 278, 385, 1101 |
| TaiI | ACGT | 2 cut(s) | 188, 563 |
| TaqI | TCGA | 7 cut(s) | 9, 17, 36, 63, 175, 376, 887 |
| TasI | AATT | 5 cut(s) | 489, 721, 754, 1069, 1129 |
| TatI | WGTACW | 2 cut(s) | 669, 1002 |
| TauI | GCSGC | 2 cut(s) | 171, 316 |
| TfiI | GAWTC | 2 cut(s) | 98, 652 |
| Tru1I | TTAA | 3 cut(s) | 389, 530, 990 |
| Tru9I | TTAA | 3 cut(s) | 389, 530, 990 |
| TscAI | CASTG | 2 cut(s) | 654, 1192 |
| TseI | GCWGC | 3 cut(s) | 104, 569, 1053 |
| TspDTI | ATGAA | 5 cut(s) | 203, 217, 375, 1010, 1110 |
| TspGWI | ACGGA | 2 cut(s) | 75, 394 |
| TspRI | CASTG | 2 cut(s) | 654, 1192 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1047 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 295 |
| XapI | RAATTY | 3 cut(s) | 489, 1069, 1129 |
| XmiI | GTMKAC | 1 cut(s) | 9 |
| XspI | CTAG | 1 cut(s) | 1167 |
| ZrmI | AGTACT | 1 cut(s) | 1004 |