Rw7G041120
NAC Family

Inactive rhomboid protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
64054896 .. 64058163
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041120.1

Sequence Viewer

Length: 1188 bp
ATGGCCGCCGAGCCACCGCCGTCGAAGCTCCACAGCCAGATCGACATCAACGCTCCTCCGCCGTGCTCCGCCGACGACTCCTCCTTGGCCACCGAAACCCTCCGCGAACAGAGGCTCTCCTTCTTCGCCTCCCGCTACACTCGCCGCCGCCGCCGCCGCCGGAGCGACACTTGGATCATCTCGCTCTTCGTCATCCTCCACTTCCTGGCCTTCGCTTTGACCATGGCGGTCAACGACTGCTGGCGCAAGTCTCACGGCGACTGCGCTCTCGGAGCCTTTGGGAGACTGTCGTTTCAGCCGCTCCGGGAAAACCCTCTCCTCGGCCCTTCGGCTTCCACGCTTGATGAAGTAGGAGCTCTTCGACGGACTTTTTTGACAGAGAATCACAAAACTTGGCGCCTCTTCACATTTCCATGTCTGCATGCTGGAGCCATCCACCTTGTGATCAACCTTTGCAGTGTTGTCTTCATTGGAATTCACTTGGAGCAAGAGTTCGGAACATTAATTGCAGGGTTAATCTATGTACTGTCTTCTTTCAATGGTACATTGGTGGCTGCACTTTTTGTTGAGAAACGCCCAGCAGTGGGTTCTTCCGGGGCTCTATATGGGTTACTTGGAGCTACACTTTCTGCTCTGATTCAGAACTGGGACTTATACACCAACAAGTTCACAGCTCTCACATCAGTATTACTTGTCGCCATTGGAAATTTCCTCCTTGGTTTGCTACCTTATGTGGATAACTTTTCAAACCTTGGGGGTTTTCTATCAGGGTTCCTACTCGGATCTGCGCTTTTATCCAGTCCTCAAGTCAGAGAAGTGGTGCAAGGAAAAGGAGGCCTCCTGGACAATGATCTTAAAAGCTCTATCAGGTCCAGGTTGAGGCAGAAGCTGGACAGACCAGTCTATAGAAGTGTCTGTCTTTTTCTCTTTGTACTTATGCTTGCAGGATGTCTTGTAGCAGTTTTGCAGGGCATTGACATGAACCAGTACTGCAAATGGTGTCGTTATGTTGACTGCTTGCCTTCCAAAAGATGGAGCTGCAGCGAAATGGAAGCTTTTTGTGAGACCATGGTGAGCCATGAACAGATGACTTTGACCTGTATGGGTAATGGGAACTTCAAGGTTCTTCCTTTCACCAACATTTCTCAAGCCAGGATGAATGACTTGTGCAGCATGATATGCTCATAG

Protein Analysis

395

Amino Acids

43.82

Weight (kDa)

8.81

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 129 - 265 2.7e-31 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 899
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 2 cut(s) 205, 1032
AccBSI CCGCTC 1 cut(s) 301
AccII CGCG 1 cut(s) 105
AclWI GGATC 2 cut(s) 182, 790
AcoI YGGCCR 2 cut(s) 3, 87
AcsI RAATTY 2 cut(s) 474, 706
AcyI GRCGYC 1 cut(s) 397
AdeI CACNNNGTG 1 cut(s) 442
AfaI GTAC 4 cut(s) 525, 544, 933, 989
AfiI CCNNNNNNNGG 6 cut(s) 205, 320, 583, 584, 879, 1032
AgsI TTSAA 3 cut(s) 538, 747, 1120
AjnI CCWGG 4 cut(s) 204, 840, 872, 1151
AloI GAACNNNNNNTCC 2 cut(s) 476, 508
AluBI AGCT 8 cut(s) 28, 356, 620, 674, 861, 889, 1038, 1055
AluI AGCT 8 cut(s) 28, 356, 620, 674, 861, 889, 1038, 1055
Alw21I GWGCWC 2 cut(s) 68, 358
Alw26I GTCTC 3 cut(s) 255, 277, 1058
AlwI GGATC 2 cut(s) 182, 790
AlwNI CAGNNNCTG 1 cut(s) 889
AoxI GGCC 5 cut(s) 3, 87, 207, 322, 835
ApeKI GCWGC 4 cut(s) 554, 1038, 1041, 1170
ApoI RAATTY 2 cut(s) 474, 706
AseI ATTAAT 1 cut(s) 503
AspLEI GCGC 4 cut(s) 246, 266, 399, 790
AspS9I GGNCC 2 cut(s) 323, 870
AsuC2I CCSGG 2 cut(s) 305, 595
AsuHPI GGTGA 2 cut(s) 1084, 1126
AvaII GGWCC 1 cut(s) 870
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 2 cut(s) 358, 601
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BbsI GAAGAC 2 cut(s) 457, 522
Bbv12I GWGCWC 2 cut(s) 68, 358
BbvI GCAGC 4 cut(s) 541, 1025, 1053, 1182
BccI CCATC 2 cut(s) 440, 1026
BceAI ACGGC 3 cut(s) 4, 46, 271
BciT130I CCWGG 4 cut(s) 206, 842, 874, 1153
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 2 cut(s) 305, 595
BcoDI GTCTC 3 cut(s) 255, 277, 1058
BfmI CTRYAG 2 cut(s) 904, 1039
BfoI RGCGCY 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 989
Bme1390I CCNGG 6 cut(s) 206, 305, 595, 842, 874, 1153
Bme18I GGWCC 1 cut(s) 870
BmgT120I GGNCC 2 cut(s) 323, 870
BmiI GGNNCC 4 cut(s) 274, 398, 430, 773
BmrFI CCNGG 6 cut(s) 206, 305, 595, 842, 874, 1153
BmrI ACTGGG 1 cut(s) 655
BmuI ACTGGG 1 cut(s) 655
BpiI GAAGAC 2 cut(s) 457, 522
BpmI CTGGAG 1 cut(s) 447
BpuEI CTTGAG 2 cut(s) 789, 1131
BpuMI CCSGG 2 cut(s) 305, 595
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 397
BsaI GGTCTC 1 cut(s) 1058
BsaJI CCNNGG 7 cut(s) 84, 222, 319, 594, 715, 751, 1068
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 476, 506
Bsc4I CCNNNNNNNGG 6 cut(s) 205, 320, 583, 584, 879, 1032
Bse1I ACTGG 4 cut(s) 650, 798, 899, 985
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 4 cut(s) 206, 842, 874, 1153
BseDI CCNNGG 7 cut(s) 84, 222, 319, 594, 715, 751, 1068
BseGI GGATG 4 cut(s) 192, 432, 953, 1161
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 6 cut(s) 205, 320, 583, 584, 879, 1032
BseNI ACTGG 4 cut(s) 650, 798, 899, 985
BseRI GAGGAG 3 cut(s) 45, 70, 308
BseXI GCAGC 4 cut(s) 541, 1025, 1053, 1182
BseYI CCCAGC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 5 cut(s) 5, 89, 209, 324, 837
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 68, 358
BsiSI CCGG 3 cut(s) 160, 304, 594
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 6 cut(s) 205, 320, 583, 584, 879, 1032
BsmAI GTCTC 3 cut(s) 255, 277, 1058
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 5 cut(s) 5, 89, 209, 324, 837
Bso31I GGTCTC 1 cut(s) 1058
Bsp1286I GDGCHC 3 cut(s) 68, 358, 601
Bsp143I GATC 5 cut(s) 39, 174, 444, 782, 850
Bsp19I CCATGG 2 cut(s) 222, 1068
BspANI GGCC 5 cut(s) 5, 89, 209, 324, 837
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 4 cut(s) 274, 398, 430, 773
BspMAI CTGCAG 1 cut(s) 1043
BspPI GGATC 2 cut(s) 182, 790
BspQI GCTCTTC 2 cut(s) 191, 363
BspT107I GGYRCC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 1058
BsrBI CCGCTC 1 cut(s) 301
BsrI ACTGG 4 cut(s) 650, 798, 899, 985
BssECI CCNNGG 7 cut(s) 84, 222, 319, 594, 715, 751, 1068
BssMI GATC 5 cut(s) 39, 174, 444, 782, 850
BssNI GRCGYC 1 cut(s) 397
BssT1I CCWWGG 5 cut(s) 84, 222, 715, 751, 1068
Bst2UI CCWGG 4 cut(s) 206, 842, 874, 1153
Bst4CI ACNGT 2 cut(s) 288, 528
Bst6I CTCTTC 3 cut(s) 191, 363, 407
BstACI GRCGYC 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 1179
BstC8I GCNNGC 4 cut(s) 242, 423, 942, 1019
BstDSI CCRYGG 2 cut(s) 222, 1068
BstF5I GGATG 4 cut(s) 192, 432, 953, 1161
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 4 cut(s) 246, 266, 399, 790
BstKTI GATC 5 cut(s) 42, 177, 447, 785, 853
BstMAI GTCTC 3 cut(s) 255, 277, 1058
BstMBI GATC 5 cut(s) 39, 174, 444, 782, 850
BstMWI GCNNNNNNNGC 8 cut(s) 25, 141, 150, 153, 156, 162, 272, 1179
BstNI CCWGG 4 cut(s) 206, 842, 874, 1153
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 6 cut(s) 204, 303, 593, 840, 872, 1151
BstSFI CTRYAG 2 cut(s) 904, 1039
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 541, 1025, 1053, 1182
BstV2I GAAGAC 2 cut(s) 457, 522
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
BsuRI GGCC 5 cut(s) 5, 89, 209, 324, 837
BtgI CCRYGG 2 cut(s) 222, 1068
BtsCI GGATG 4 cut(s) 192, 432, 953, 1161
BtsI GCAGTG 2 cut(s) 463, 588
BtsIMutI CAGTG 2 cut(s) 463, 588
Cac8I GCNNGC 4 cut(s) 242, 423, 942, 1019
CaiI CAGNNNCTG 1 cut(s) 889
CfoI GCGC 4 cut(s) 246, 266, 399, 790
Cfr13I GGNCC 2 cut(s) 323, 870
Csp6I GTAC 4 cut(s) 524, 543, 932, 988
CviAII CATG 7 cut(s) 223, 414, 422, 979, 1069, 1079, 1174
CviQI GTAC 4 cut(s) 524, 543, 932, 988
DinI GGCGCC 1 cut(s) 398
DpnI GATC 5 cut(s) 41, 176, 446, 784, 852
DpnII GATC 5 cut(s) 39, 174, 444, 782, 850
DraIII CACNNNGTG 1 cut(s) 442
DrdI GACNNNNNNGTC 1 cut(s) 899
DseDI GACNNNNNNGTC 1 cut(s) 899
EaeI YGGCCR 2 cut(s) 3, 87
Eam1104I CTCTTC 3 cut(s) 191, 363, 407
EarI CTCTTC 3 cut(s) 191, 363, 407
EciI GGCGGA 2 cut(s) 48, 58
Ecl136II GAGCTC 1 cut(s) 356
Eco130I CCWWGG 5 cut(s) 84, 222, 715, 751, 1068
Eco147I AGGCCT 1 cut(s) 837
Eco24I GRGCYC 2 cut(s) 358, 601
Eco31I GGTCTC 1 cut(s) 1058
Eco47I GGWCC 1 cut(s) 870
Eco53kI GAGCTC 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 4 cut(s) 204, 840, 872, 1151
EcoT14I CCWWGG 5 cut(s) 84, 222, 715, 751, 1068
EcoT38I GRGCYC 2 cut(s) 358, 601
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
ErhI CCWWGG 5 cut(s) 84, 222, 715, 751, 1068
FaeI CATG 7 cut(s) 226, 417, 425, 982, 1072, 1082, 1177
FaqI GGGAC 1 cut(s) 662
FatI CATG 7 cut(s) 222, 413, 421, 978, 1068, 1078, 1173
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 444
FokI GGATG 4 cut(s) 179, 419, 960, 1168
FriOI GRGCYC 2 cut(s) 358, 601
GlaI GCGC 4 cut(s) 245, 265, 398, 789
GsaI CCCAGC 1 cut(s) 581
GsuI CTGGAG 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 5 cut(s) 5, 89, 209, 324, 837
HapII CCGG 3 cut(s) 160, 304, 594
HhaI GCGC 4 cut(s) 246, 266, 399, 790
Hin1I GRCGYC 1 cut(s) 397
Hin1II CATG 7 cut(s) 226, 417, 425, 982, 1072, 1082, 1177
Hin6I GCGC 4 cut(s) 244, 264, 397, 788
HinP1I GCGC 4 cut(s) 244, 264, 397, 788
HincII GTYRAC 2 cut(s) 232, 1012
HindII GTYRAC 2 cut(s) 232, 1012
HindIII AAGCTT 1 cut(s) 1053
HinfI GANTC 3 cut(s) 77, 382, 637
HpaII CCGG 3 cut(s) 160, 304, 594
HphI GGTGA 2 cut(s) 1084, 1126
Hpy166II GTNNAC 3 cut(s) 232, 669, 1012
Hpy188I TCNGA 6 cut(s) 272, 497, 636, 642, 782, 812
Hpy8I GTNNAC 3 cut(s) 232, 669, 1012
Hpy99I CGWCG 3 cut(s) 25, 77, 366
HpyAV CCTTC 4 cut(s) 130, 220, 336, 1032
HpyCH4III ACNGT 2 cut(s) 288, 528
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 141, 150, 153, 156, 162, 272, 1179
Hsp92I GRCGYC 1 cut(s) 397
Hsp92II CATG 7 cut(s) 226, 417, 425, 982, 1072, 1082, 1177
HspAI GCGC 4 cut(s) 244, 264, 397, 788
KasI GGCGCC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 5 cut(s) 39, 174, 444, 782, 850
LguI GCTCTTC 2 cut(s) 191, 363
Lsp1109I GCAGC 4 cut(s) 541, 1025, 1053, 1182
MaeIII GTNAC 1 cut(s) 609
MalI GATC 5 cut(s) 41, 176, 446, 784, 852
MbiI CCGCTC 1 cut(s) 301
MboI GATC 5 cut(s) 39, 174, 444, 782, 850
MboII GAAGA 8 cut(s) 115, 178, 350, 394, 457, 522, 582, 1118
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 3 cut(s) 68, 358, 601
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 474, 504, 706
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 397
MlyI GAGTC 1 cut(s) 71
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 3 cut(s) 503, 515, 855
MslI CAYNNNNRTG 2 cut(s) 412, 977
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 3 cut(s) 160, 304, 594
MspR9I CCNGG 6 cut(s) 206, 305, 595, 842, 874, 1153
MvaI CCWGG 4 cut(s) 206, 842, 874, 1153
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 8 cut(s) 25, 141, 150, 153, 156, 162, 272, 1179
NarI GGCGCC 1 cut(s) 397
NciI CCSGG 2 cut(s) 305, 595
NcoI CCATGG 2 cut(s) 222, 1068
NdeII GATC 5 cut(s) 39, 174, 444, 782, 850
NlaIII CATG 7 cut(s) 226, 417, 425, 982, 1072, 1082, 1177
NlaIV GGNNCC 4 cut(s) 274, 398, 430, 773
NmeAIII GCCGAG 2 cut(s) 34, 300
NspI RCATGY 1 cut(s) 425
PaeI GCATGC 1 cut(s) 425
PceI AGGCCT 1 cut(s) 837
PciSI GCTCTTC 2 cut(s) 191, 363
PfeI GAWTC 2 cut(s) 382, 637
PflMI CCANNNNNTGG 2 cut(s) 205, 1032
PfoI TCCNGGA 2 cut(s) 303, 840
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 358
Psp6I CCWGG 4 cut(s) 204, 840, 872, 1151
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 4 cut(s) 204, 840, 872, 1151
PspN4I GGNNCC 4 cut(s) 274, 398, 430, 773
PspPI GGNCC 2 cut(s) 323, 870
PstI CTGCAG 1 cut(s) 1043
PstNI CAGNNNCTG 1 cut(s) 889
PsuI RGATCY 1 cut(s) 782
RsaI GTAC 4 cut(s) 525, 544, 933, 989
RsaNI GTAC 4 cut(s) 524, 543, 932, 988
RseI CAYNNNNRTG 2 cut(s) 412, 977
SacI GAGCTC 1 cut(s) 358
SapI GCTCTTC 2 cut(s) 191, 363
SaqAI TTAA 3 cut(s) 503, 515, 855
Sau3AI GATC 5 cut(s) 39, 174, 444, 782, 850
Sau96I GGNCC 2 cut(s) 323, 870
ScaI AGTACT 1 cut(s) 989
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 6 cut(s) 206, 305, 595, 842, 874, 1153
SduI GDGCHC 3 cut(s) 68, 358, 601
SfcI CTRYAG 2 cut(s) 904, 1039
SfoI GGCGCC 1 cut(s) 398
SinI GGWCC 1 cut(s) 870
SmiMI CAYNNNNRTG 2 cut(s) 412, 977
SmlI CTYRAG 2 cut(s) 804, 1146
SmoI CTYRAG 2 cut(s) 804, 1146
SphI GCATGC 1 cut(s) 425
Sse9I AATT 3 cut(s) 474, 504, 706
SseBI AGGCCT 1 cut(s) 837
SspDI GGCGCC 1 cut(s) 396
SstI GAGCTC 1 cut(s) 358
StuI AGGCCT 1 cut(s) 837
StyD4I CCNGG 6 cut(s) 204, 303, 593, 840, 872, 1151
StyI CCWWGG 5 cut(s) 84, 222, 715, 751, 1068
TaaI ACNGT 2 cut(s) 288, 528
TaqI TCGA 3 cut(s) 23, 42, 361
TasI AATT 3 cut(s) 474, 504, 706
TatI WGTACW 3 cut(s) 523, 931, 987
TauI GCSGC 7 cut(s) 8, 147, 150, 153, 156, 159, 301
TfiI GAWTC 2 cut(s) 382, 637
Tru1I TTAA 3 cut(s) 503, 515, 855
Tru9I TTAA 3 cut(s) 503, 515, 855
TscAI CASTG 2 cut(s) 463, 588
TseI GCWGC 4 cut(s) 554, 1038, 1041, 1170
TspDTI ATGAA 5 cut(s) 360, 457, 995, 1095, 1172
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 2 cut(s) 463, 588
Van91I CCANNNNNTGG 2 cut(s) 205, 1032
VpaK11BI GGWCC 1 cut(s) 870
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 2 cut(s) 474, 706
XceI RCATGY 1 cut(s) 425
ZrmI AGTACT 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.