Rh7BG463300
NAC Family

Inactive rhomboid protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
54886004 .. 54889423
3420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG463300.1

Sequence Viewer

Length: 1083 bp
ATGGCCGCCGAGCCACCGCCGTCGAAGCTCCACACCCAGATCGACATCACCGCTCCTCCGCCGTGCTCCGCCGACGACTCCTCCTTGGCCACCGAAACCCTCCGCGAACAGAGGCTCTCCTTCTTCGCCTCCCGCTACACTCGCCGCCGCCGCCGCCGCCGCCGCCGGAGCGACACGTGGATCATCTCTCTCTTCGTCATCCTCCACGTCCTGGCCTTCGCTTTGACCATGGCGGTCAACGACTGCTGGCGTAAGTCTCACGGCGACTGCGCTCTCGGAGCCTTCGGGAGATTGTCGTTTCAGCCGCTCCGGGAAAACCCTCTCCTCGGCCCTTCGGCTTCCACGCTTGATGAAGTAGGAGCTCTTCGGCGGACTTTTTTGACAGAGAATCACAAAACTTGGCGCCTCTTCACATTTCCATGTCTGCATGCTGGAGCCATCCACCTTGTGATCAACCTTTGCAGTGTTGTCTTCATTGGAATTCACTTGGAGCAAGAGTTCGGAACATTAATTGCAGGGTTAATCTATGTACTGTCTTCTTTCAATGGTACATTGGTGGCTGCACTTTTTGTTGAGAAACGCCCAGCAGTGGGTTCTTCCGGGGCTCTATATGGGTTACTTGGAGCTACACTTTCTGCTCTGATTCAGAACTGGGACTTATACACCAACAAGTTCACAGCTCTCACATCAGTATTACTTGTCGCCATTGGAAATTTCCTCCTTGGTTTGCTACCTTATGTGGATAACTTTTCAAACCTTGGGGGTTTTCTATCAGGGTTCCTACTCGGATCTGCGCTTTTATCCAGTCCTCAAGTCAGAGAAGTGGTGCAAGGAAAAGGAGGCCTCCTGGACAATGATCTTAAAAGCTCTATCAAGTCAAGGTTCAGGCAGAAGCTGGACAGACCAGTCTATAGAAGTGTCTGTCTTTTTCTCTTTGTACTTATGCTTGCAGGATGTCTTGTAGCAGTTTTGCAGGGCATTGACATGAACCAGTACTGCAAATGGTGTCGTTATGTTGACTGCGTGCCTTCCAAAAGATGGAGCTGCAGCGAAATGGAAGCTTTTTGTGAGGTATGCAACTGA

Protein Analysis

360

Amino Acids

39.95

Weight (kDa)

9.07

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 131 - 267 2.2e-31 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 905
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 2 cut(s) 211, 1038
AccBSI CCGCTC 2 cut(s) 53, 307
AccII CGCG 1 cut(s) 105
AclWI GGATC 2 cut(s) 188, 796
AcoI YGGCCR 2 cut(s) 3, 87
AcsI RAATTY 2 cut(s) 480, 712
AcvI CACGTG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 403
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 4 cut(s) 531, 550, 939, 995
AfiI CCNNNNNNNGG 5 cut(s) 211, 326, 589, 590, 1038
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 544, 753
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 2 cut(s) 210, 846
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 8 cut(s) 28, 362, 626, 680, 867, 895, 1044, 1061
AluI AGCT 8 cut(s) 28, 362, 626, 680, 867, 895, 1044, 1061
Alw21I GWGCWC 2 cut(s) 68, 364
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 2 cut(s) 188, 796
AlwNI CAGNNNCTG 1 cut(s) 895
AoxI GGCC 5 cut(s) 3, 87, 213, 328, 841
ApeKI GCWGC 3 cut(s) 560, 1044, 1047
ApoI RAATTY 2 cut(s) 480, 712
AseI ATTAAT 1 cut(s) 509
AspLEI GCGC 3 cut(s) 272, 405, 796
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 2 cut(s) 311, 601
AsuHPI GGTGA 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 2 cut(s) 364, 607
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbrPI CACGTG 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 463, 528
Bbv12I GWGCWC 2 cut(s) 68, 364
BbvI GCAGC 3 cut(s) 547, 1031, 1059
BccI CCATC 2 cut(s) 446, 1032
BceAI ACGGC 3 cut(s) 4, 46, 277
BciT130I CCWGG 2 cut(s) 212, 848
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 2 cut(s) 311, 601
BcoDI GTCTC 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 910, 1045
BfoI RGCGCY 1 cut(s) 406
BmcAI AGTACT 1 cut(s) 995
Bme1390I CCNGG 4 cut(s) 212, 311, 601, 848
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 4 cut(s) 280, 404, 436, 779
BmrFI CCNGG 4 cut(s) 212, 311, 601, 848
BmrI ACTGGG 1 cut(s) 661
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 463, 528
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 795
BpuMI CCSGG 2 cut(s) 311, 601
BsaAI YACGTR 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 403
BsaJI CCNNGG 6 cut(s) 84, 228, 325, 600, 721, 757
BsaXI ACNNNNNCTCC 6 cut(s) 40, 65, 70, 95, 482, 512
Bsc4I CCNNNNNNNGG 5 cut(s) 211, 326, 589, 590, 1038
Bse1I ACTGG 4 cut(s) 656, 804, 905, 991
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 212, 848
BseDI CCNNGG 6 cut(s) 84, 228, 325, 600, 721, 757
BseGI GGATG 3 cut(s) 198, 438, 959
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 5 cut(s) 211, 326, 589, 590, 1038
BseNI ACTGG 4 cut(s) 656, 804, 905, 991
BseRI GAGGAG 3 cut(s) 45, 70, 314
BseXI GCAGC 3 cut(s) 547, 1031, 1059
BseYI CCCAGC 1 cut(s) 583
BsgI GTGCAG 1 cut(s) 546
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 5 cut(s) 5, 89, 215, 330, 843
BshNI GGYRCC 1 cut(s) 402
BsiHKAI GWGCWC 2 cut(s) 68, 364
BsiSI CCGG 3 cut(s) 166, 310, 600
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 5 cut(s) 211, 326, 589, 590, 1038
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 5 cut(s) 5, 89, 215, 330, 843
Bsp1286I GDGCHC 3 cut(s) 68, 364, 607
Bsp143I GATC 5 cut(s) 39, 180, 450, 788, 856
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 5 cut(s) 5, 89, 215, 330, 843
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 4 cut(s) 280, 404, 436, 779
BspMAI CTGCAG 1 cut(s) 1049
BspPI GGATC 2 cut(s) 188, 796
BspQI GCTCTTC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 402
BsrBI CCGCTC 2 cut(s) 53, 307
BsrI ACTGG 4 cut(s) 656, 804, 905, 991
BssECI CCNNGG 6 cut(s) 84, 228, 325, 600, 721, 757
BssMI GATC 5 cut(s) 39, 180, 450, 788, 856
BssNI GRCGYC 1 cut(s) 403
BssT1I CCWWGG 4 cut(s) 84, 228, 721, 757
Bst2UI CCWGG 2 cut(s) 212, 848
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 3 cut(s) 197, 369, 413
BstACI GRCGYC 1 cut(s) 403
BstBAI YACGTR 1 cut(s) 177
BstC8I GCNNGC 4 cut(s) 248, 429, 948, 1025
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 3 cut(s) 198, 438, 959
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 3 cut(s) 272, 405, 796
BstKTI GATC 5 cut(s) 42, 183, 453, 791, 859
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 5 cut(s) 39, 180, 450, 788, 856
BstMWI GCNNNNNNNGC 9 cut(s) 25, 141, 150, 153, 156, 159, 162, 168, 278
BstNI CCWGG 2 cut(s) 212, 848
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 4 cut(s) 210, 309, 599, 846
BstSFI CTRYAG 2 cut(s) 910, 1045
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 547, 1031, 1059
BstV2I GAAGAC 2 cut(s) 463, 528
BstX2I RGATCY 1 cut(s) 788
BstYI RGATCY 1 cut(s) 788
BsuRI GGCC 5 cut(s) 5, 89, 215, 330, 843
BtgI CCRYGG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 3 cut(s) 198, 438, 959
BtsI GCAGTG 2 cut(s) 469, 594
BtsIMutI CAGTG 2 cut(s) 469, 594
Cac8I GCNNGC 4 cut(s) 248, 429, 948, 1025
CaiI CAGNNNCTG 1 cut(s) 895
CfoI GCGC 3 cut(s) 272, 405, 796
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 4 cut(s) 530, 549, 938, 994
CviAII CATG 4 cut(s) 229, 420, 428, 985
CviQI GTAC 4 cut(s) 530, 549, 938, 994
DinI GGCGCC 1 cut(s) 404
DpnI GATC 5 cut(s) 41, 182, 452, 790, 858
DpnII GATC 5 cut(s) 39, 180, 450, 788, 856
DraIII CACNNNGTG 1 cut(s) 448
DrdI GACNNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 905
EaeI YGGCCR 2 cut(s) 3, 87
Eam1104I CTCTTC 3 cut(s) 197, 369, 413
EarI CTCTTC 3 cut(s) 197, 369, 413
EciI GGCGGA 3 cut(s) 48, 58, 385
Ecl136II GAGCTC 1 cut(s) 362
Eco130I CCWWGG 4 cut(s) 84, 228, 721, 757
Eco147I AGGCCT 1 cut(s) 843
Eco24I GRGCYC 2 cut(s) 364, 607
Eco53kI GAGCTC 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 210, 846
EcoT14I CCWWGG 4 cut(s) 84, 228, 721, 757
EcoT38I GRGCYC 2 cut(s) 364, 607
EgeI GGCGCC 1 cut(s) 404
EheI GGCGCC 1 cut(s) 404
ErhI CCWWGG 4 cut(s) 84, 228, 721, 757
FaeI CATG 4 cut(s) 232, 423, 431, 988
FaqI GGGAC 1 cut(s) 668
FatI CATG 4 cut(s) 228, 419, 427, 984
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 450
FokI GGATG 3 cut(s) 185, 425, 966
FriOI GRGCYC 2 cut(s) 364, 607
GlaI GCGC 3 cut(s) 271, 404, 795
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 5 cut(s) 5, 89, 215, 330, 843
HapII CCGG 3 cut(s) 166, 310, 600
HhaI GCGC 3 cut(s) 272, 405, 796
Hin1I GRCGYC 1 cut(s) 403
Hin1II CATG 4 cut(s) 232, 423, 431, 988
Hin6I GCGC 3 cut(s) 270, 403, 794
HinP1I GCGC 3 cut(s) 270, 403, 794
HincII GTYRAC 2 cut(s) 238, 1018
HindII GTYRAC 2 cut(s) 238, 1018
HindIII AAGCTT 1 cut(s) 1059
HinfI GANTC 3 cut(s) 77, 388, 643
HpaII CCGG 3 cut(s) 166, 310, 600
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 238, 675, 1018
Hpy188I TCNGA 6 cut(s) 278, 503, 642, 648, 788, 818
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 3 cut(s) 238, 675, 1018
Hpy99I CGWCG 2 cut(s) 25, 77
HpyAV CCTTC 5 cut(s) 130, 226, 292, 342, 1038
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4IV ACGT 2 cut(s) 176, 207
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 141, 150, 153, 156, 159, 162, 168, 278
HpySE526I ACGT 2 cut(s) 176, 207
Hsp92I GRCGYC 1 cut(s) 403
Hsp92II CATG 4 cut(s) 232, 423, 431, 988
HspAI GCGC 3 cut(s) 270, 403, 794
KasI GGCGCC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 5 cut(s) 39, 180, 450, 788, 856
LguI GCTCTTC 1 cut(s) 369
Lsp1109I GCAGC 3 cut(s) 547, 1031, 1059
MaeII ACGT 2 cut(s) 176, 207
MaeIII GTNAC 1 cut(s) 615
MalI GATC 5 cut(s) 41, 182, 452, 790, 858
MbiI CCGCTC 2 cut(s) 53, 307
MboI GATC 5 cut(s) 39, 180, 450, 788, 856
MboII GAAGA 7 cut(s) 115, 184, 356, 400, 463, 528, 588
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 3 cut(s) 68, 364, 607
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 480, 510, 712
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 403
MlyI GAGTC 1 cut(s) 71
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 3 cut(s) 509, 521, 861
MslI CAYNNNNRTG 2 cut(s) 418, 983
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 3 cut(s) 166, 310, 600
MspR9I CCNGG 4 cut(s) 212, 311, 601, 848
MvaI CCWGG 2 cut(s) 212, 848
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 9 cut(s) 25, 141, 150, 153, 156, 159, 162, 168, 278
NarI GGCGCC 1 cut(s) 403
NciI CCSGG 2 cut(s) 311, 601
NcoI CCATGG 1 cut(s) 228
NdeII GATC 5 cut(s) 39, 180, 450, 788, 856
NlaIII CATG 4 cut(s) 232, 423, 431, 988
NlaIV GGNNCC 4 cut(s) 280, 404, 436, 779
NmeAIII GCCGAG 2 cut(s) 34, 306
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PceI AGGCCT 1 cut(s) 843
PciSI GCTCTTC 1 cut(s) 369
PfeI GAWTC 2 cut(s) 388, 643
PflMI CCANNNNNTGG 2 cut(s) 211, 1038
PfoI TCCNGGA 2 cut(s) 309, 846
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 406
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
PpsI GAGTC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 177
PshBI ATTAAT 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 210, 846
PspCI CACGTG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 2 cut(s) 210, 846
PspN4I GGNNCC 4 cut(s) 280, 404, 436, 779
PspPI GGNCC 1 cut(s) 329
PstI CTGCAG 1 cut(s) 1049
PstNI CAGNNNCTG 1 cut(s) 895
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 4 cut(s) 531, 550, 939, 995
RsaNI GTAC 4 cut(s) 530, 549, 938, 994
RseI CAYNNNNRTG 2 cut(s) 418, 983
SacI GAGCTC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 509, 521, 861
Sau3AI GATC 5 cut(s) 39, 180, 450, 788, 856
Sau96I GGNCC 1 cut(s) 329
ScaI AGTACT 1 cut(s) 995
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 4 cut(s) 212, 311, 601, 848
SduI GDGCHC 3 cut(s) 68, 364, 607
SfcI CTRYAG 2 cut(s) 910, 1045
SfoI GGCGCC 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 418, 983
SmlI CTYRAG 1 cut(s) 810
SmoI CTYRAG 1 cut(s) 810
SphI GCATGC 1 cut(s) 431
Sse9I AATT 3 cut(s) 480, 510, 712
SseBI AGGCCT 1 cut(s) 843
SspDI GGCGCC 1 cut(s) 402
SstI GAGCTC 1 cut(s) 364
StuI AGGCCT 1 cut(s) 843
StyD4I CCNGG 4 cut(s) 210, 309, 599, 846
StyI CCWWGG 4 cut(s) 84, 228, 721, 757
TaaI ACNGT 1 cut(s) 534
TaiI ACGT 2 cut(s) 179, 210
TaqI TCGA 2 cut(s) 23, 42
TasI AATT 3 cut(s) 480, 510, 712
TatI WGTACW 3 cut(s) 529, 937, 993
TauI GCSGC 9 cut(s) 8, 147, 150, 153, 156, 159, 162, 165, 307
TfiI GAWTC 2 cut(s) 388, 643
Tru1I TTAA 3 cut(s) 509, 521, 861
Tru9I TTAA 3 cut(s) 509, 521, 861
TscAI CASTG 2 cut(s) 469, 594
TseI GCWGC 3 cut(s) 560, 1044, 1047
TspDTI ATGAA 3 cut(s) 366, 463, 1001
TspRI CASTG 2 cut(s) 469, 594
Van91I CCANNNNNTGG 2 cut(s) 211, 1038
VspI ATTAAT 1 cut(s) 509
XapI RAATTY 2 cut(s) 480, 712
XceI RCATGY 1 cut(s) 431
ZrmI AGTACT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.