Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005327.1

Orthogroup ID

OG0014538

Physical Location & Seq

Genomic Coordinates Reverse (-)

81489 .. 84910

Gene Structure 3422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005327.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atggccgccgagccaccgccatcgaagctccacagccagatcgacatcaacgctcctccgccgtgctccgccgacgactcctccttggccaccgaaaccctccgcgaacagaggctctccttcttcgcctcccgctacactcgccgccgccgccgccgccggagcgacacgtggatcatctcgctcttcgtcatcctccacgtcctggccttctacgttgacctcttcggttccctgcttgatgaagtaggagctcttcgacggacttttttgacagagaatcacaaaacttggcgcctcttcacatttccatgtctgcatgctggagccatccaccttgtgatcaacctttgcagtgttgtcttcattggaattcacttggagcaagagttcggaacatggttaatctatgtactgtcttctttcaatggtacattggtggctgcactttttgttgagaaacgcccagcagtgggttcttccggggctctatatgggttacttggagctacactttctgctctgattcagaactgggacttatacaccaacaagttcacagctctcacatcagtattacttgtcgccattggaaatttcctccttggtttgctaccttatgtggataacttttcaaaccttgggggttttctatcagggttcctactcggatctgcgcttttatccagtcctcaagtcagagaagtggtgcaaggaaaaggaggcctcctggacaatgatcttaaaagctctatcaagtcgaggttcaggcagaagctggacagaccagtctatagaagtgtctgtctttttctctttgtacttatgcttgcaggatgtcttgtagcagttttgcagggcattgacatgaaccagtactgcaaatggtgtcgttatgttgactgcttgccttccaaaagatggagctgcagcgaaatggaagctttttgtgagaccatggtgagccatgaacagatgactttgacctgtatgggtaatgggaacttcaaggttcttcctttcaccaacatttctcaagccaggatgaatgacttgtgcagcgtgatatgctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

358

Amino Acids

40.0

Weight (kDa)

8.67

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77860 AT1G77860
fragaria_vesca	FvH4_5g38430
malus_domestica	MD08G1173800.v1.1
prunus_persica	Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1 Prupe.1G507800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0240461
rosa_laevigata	RLG00000000677
rosa_multiflora	Rmu_sc0005327.1_g000015
rosa_roxburghii	Rroxscaffold_3G00219970
rosa_rugosa	Rorug07G0336300
rosa_samantha	Rh7AG490600 Rh7BG463300 Rh7CG506800 Rh7DG474400
rosa_wichuraiana	Rw7G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	788
AccB1I	GGYRCC	1 cut(s)	294
AccB7I	CCANNNNNTGG	2 cut(s)	205, 921
AccII	CGCG	1 cut(s)	105
AclWI	GGATC	2 cut(s)	182, 679
AcoI	YGGCCR	2 cut(s)	3, 87
AcsI	RAATTY	2 cut(s)	372, 595
AcvI	CACGTG	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	295
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	4 cut(s)	414, 433, 822, 878
AfiI	CCNNNNNNNGG	4 cut(s)	205, 472, 473, 921
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	427, 636, 1009
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	3 cut(s)	204, 729, 1040
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	8 cut(s)	28, 254, 509, 563, 750, 778, 927, 944
AluI	AGCT	8 cut(s)	28, 254, 509, 563, 750, 778, 927, 944
Alw21I	GWGCWC	2 cut(s)	68, 256
Alw26I	GTCTC	1 cut(s)	947
AlwI	GGATC	2 cut(s)	182, 679
AlwNI	CAGNNNCTG	1 cut(s)	778
AoxI	GGCC	4 cut(s)	3, 87, 207, 724
ApeKI	GCWGC	4 cut(s)	443, 927, 930, 1059
ApoI	RAATTY	2 cut(s)	372, 595
AspLEI	GCGC	2 cut(s)	297, 679
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	973, 1015
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	2 cut(s)	256, 490
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	355, 411
Bbv12I	GWGCWC	2 cut(s)	68, 256
BbvI	GCAGC	4 cut(s)	430, 914, 942, 1071
BccI	CCATC	3 cut(s)	28, 338, 915
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	3 cut(s)	206, 731, 1042
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	947
BfmI	CTRYAG	2 cut(s)	793, 928
BfoI	RGCGCY	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	4 cut(s)	206, 484, 731, 1042
BmgBI	CACGTC	1 cut(s)	202
BmiI	GGNNCC	4 cut(s)	232, 296, 328, 662
BmrFI	CCNGG	4 cut(s)	206, 484, 731, 1042
BmrI	ACTGGG	1 cut(s)	544
BmuI	ACTGGG	1 cut(s)	544
BpiI	GAAGAC	2 cut(s)	355, 411
BpmI	CTGGAG	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	678, 1020
BpuMI	CCSGG	1 cut(s)	484
BsaAI	YACGTR	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	5 cut(s)	84, 483, 604, 640, 957
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 374, 404
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 472, 473, 921
Bse1I	ACTGG	4 cut(s)	539, 687, 788, 874
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	3 cut(s)	206, 731, 1042
BseDI	CCNNGG	5 cut(s)	84, 483, 604, 640, 957
BseGI	GGATG	4 cut(s)	192, 330, 842, 1050
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	4 cut(s)	205, 472, 473, 921
BseNI	ACTGG	4 cut(s)	539, 687, 788, 874
BseRI	GAGGAG	2 cut(s)	45, 70
BseXI	GCAGC	4 cut(s)	430, 914, 942, 1071
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	5, 89, 209, 726
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	68, 256
BsiSI	CCGG	2 cut(s)	160, 483
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	4 cut(s)	205, 472, 473, 921
BsmAI	GTCTC	1 cut(s)	947
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	5, 89, 209, 726
Bso31I	GGTCTC	1 cut(s)	947
Bsp1286I	GDGCHC	3 cut(s)	68, 256, 490
Bsp143I	GATC	5 cut(s)	39, 174, 342, 671, 739
Bsp19I	CCATGG	1 cut(s)	957
BspANI	GGCC	4 cut(s)	5, 89, 209, 726
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	232, 296, 328, 662
BspMAI	CTGCAG	1 cut(s)	932
BspPI	GGATC	2 cut(s)	182, 679
BspQI	GCTCTTC	2 cut(s)	191, 261
BspT107I	GGYRCC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	947
BsrI	ACTGG	4 cut(s)	539, 687, 788, 874
BssECI	CCNNGG	5 cut(s)	84, 483, 604, 640, 957
BssMI	GATC	5 cut(s)	39, 174, 342, 671, 739
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	4 cut(s)	84, 604, 640, 957
Bst2UI	CCWGG	3 cut(s)	206, 731, 1042
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	4 cut(s)	191, 230, 261, 305
BstACI	GRCGYC	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	321, 831, 908
BstDSI	CCRYGG	1 cut(s)	957
BstF5I	GGATG	4 cut(s)	192, 330, 842, 1050
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	297, 679
BstKTI	GATC	5 cut(s)	42, 177, 345, 674, 742
BstMAI	GTCTC	1 cut(s)	947
BstMBI	GATC	5 cut(s)	39, 174, 342, 671, 739
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 141, 150, 153, 156, 162, 1068
BstNI	CCWGG	3 cut(s)	206, 731, 1042
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	4 cut(s)	204, 482, 729, 1040
BstSFI	CTRYAG	2 cut(s)	793, 928
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	430, 914, 942, 1071
BstV2I	GAAGAC	2 cut(s)	355, 411
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuRI	GGCC	4 cut(s)	5, 89, 209, 726
BtgI	CCRYGG	1 cut(s)	957
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	192, 330, 842, 1050
BtsI	GCAGTG	2 cut(s)	361, 477
BtsIMutI	CAGTG	2 cut(s)	361, 477
Cac8I	GCNNGC	3 cut(s)	321, 831, 908
CaiI	CAGNNNCTG	1 cut(s)	778
CfoI	GCGC	2 cut(s)	297, 679
Csp6I	GTAC	4 cut(s)	413, 432, 821, 877
CviAII	CATG	6 cut(s)	312, 320, 399, 868, 958, 968
CviQI	GTAC	4 cut(s)	413, 432, 821, 877
DinI	GGCGCC	1 cut(s)	296
DpnI	GATC	5 cut(s)	41, 176, 344, 673, 741
DpnII	GATC	5 cut(s)	39, 174, 342, 671, 739
DraIII	CACNNNGTG	1 cut(s)	340
DrdI	GACNNNNNNGTC	1 cut(s)	788
DseDI	GACNNNNNNGTC	1 cut(s)	788
EaeI	YGGCCR	2 cut(s)	3, 87
Eam1104I	CTCTTC	4 cut(s)	191, 230, 261, 305
EarI	CTCTTC	4 cut(s)	191, 230, 261, 305
EciI	GGCGGA	2 cut(s)	48, 58
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	4 cut(s)	84, 604, 640, 957
Eco147I	AGGCCT	1 cut(s)	726
Eco24I	GRGCYC	2 cut(s)	256, 490
Eco31I	GGTCTC	1 cut(s)	947
Eco53kI	GAGCTC	1 cut(s)	254
Eco72I	CACGTG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	204, 729, 1040
EcoT14I	CCWWGG	4 cut(s)	84, 604, 640, 957
EcoT38I	GRGCYC	2 cut(s)	256, 490
EgeI	GGCGCC	1 cut(s)	296
EheI	GGCGCC	1 cut(s)	296
ErhI	CCWWGG	4 cut(s)	84, 604, 640, 957
FaeI	CATG	6 cut(s)	315, 323, 402, 871, 961, 971
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	6 cut(s)	311, 319, 398, 867, 957, 967
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	342
FokI	GGATG	4 cut(s)	179, 317, 849, 1057
FriOI	GRGCYC	2 cut(s)	256, 490
GlaI	GCGC	2 cut(s)	296, 678
GsaI	CCCAGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	4 cut(s)	5, 89, 209, 726
HapII	CCGG	2 cut(s)	160, 483
HhaI	GCGC	2 cut(s)	297, 679
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	6 cut(s)	315, 323, 402, 871, 961, 971
Hin6I	GCGC	2 cut(s)	295, 677
HinP1I	GCGC	2 cut(s)	295, 677
HincII	GTYRAC	2 cut(s)	220, 901
HindII	GTYRAC	2 cut(s)	220, 901
HindIII	AAGCTT	1 cut(s)	942
HinfI	GANTC	3 cut(s)	77, 280, 526
HpaII	CCGG	2 cut(s)	160, 483
HphI	GGTGA	2 cut(s)	973, 1015
Hpy166II	GTNNAC	3 cut(s)	220, 558, 901
Hpy188I	TCNGA	5 cut(s)	395, 525, 531, 671, 701
Hpy8I	GTNNAC	3 cut(s)	220, 558, 901
Hpy99I	CGWCG	2 cut(s)	77, 264
HpyAV	CCTTC	3 cut(s)	130, 220, 921
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4IV	ACGT	3 cut(s)	170, 201, 216
HpyCH4V	TGCA	9 cut(s)	319, 354, 446, 712, 833, 856, 882, 930, 1059
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 141, 150, 153, 156, 162, 1068
HpySE526I	ACGT	3 cut(s)	170, 201, 216
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	6 cut(s)	315, 323, 402, 871, 961, 971
HspAI	GCGC	2 cut(s)	295, 677
KasI	GGCGCC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	39, 174, 342, 671, 739
LguI	GCTCTTC	2 cut(s)	191, 261
LmnI	GCTCC	9 cut(s)	33, 58, 71, 162, 251, 326, 382, 506, 924
Lsp1109I	GCAGC	4 cut(s)	430, 914, 942, 1071
MaeII	ACGT	3 cut(s)	170, 201, 216
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	5 cut(s)	41, 176, 344, 673, 741
MboI	GATC	5 cut(s)	39, 174, 342, 671, 739
MboII	GAAGA	9 cut(s)	115, 178, 217, 248, 292, 355, 411, 471, 1007
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	3 cut(s)	68, 256, 490
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	2 cut(s)	372, 595
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	404, 744
MslI	CAYNNNNRTG	2 cut(s)	310, 866
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	2 cut(s)	160, 483
MspR9I	CCNGG	4 cut(s)	206, 484, 731, 1042
MvaI	CCWGG	3 cut(s)	206, 731, 1042
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	7 cut(s)	25, 141, 150, 153, 156, 162, 1068
NarI	GGCGCC	1 cut(s)	295
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	957
NdeII	GATC	5 cut(s)	39, 174, 342, 671, 739
NlaIII	CATG	6 cut(s)	315, 323, 402, 871, 961, 971
NlaIV	GGNNCC	4 cut(s)	232, 296, 328, 662
NmeAIII	GCCGAG	1 cut(s)	34
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	726
PciSI	GCTCTTC	2 cut(s)	191, 261
PfeI	GAWTC	2 cut(s)	280, 526
PflMI	CCANNNNNTGG	2 cut(s)	205, 921
PfoI	TCCNGGA	1 cut(s)	729
PleI	GAGTC	1 cut(s)	71
PluTI	GGCGCC	1 cut(s)	298
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	204, 729, 1040
PspCI	CACGTG	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	3 cut(s)	204, 729, 1040
PspN4I	GGNNCC	4 cut(s)	232, 296, 328, 662
PstI	CTGCAG	1 cut(s)	932
PstNI	CAGNNNCTG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	4 cut(s)	414, 433, 822, 878
RsaNI	GTAC	4 cut(s)	413, 432, 821, 877
RseI	CAYNNNNRTG	2 cut(s)	310, 866
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	2 cut(s)	191, 261
SaqAI	TTAA	2 cut(s)	404, 744
Sau3AI	GATC	5 cut(s)	39, 174, 342, 671, 739
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	4 cut(s)	206, 484, 731, 1042
SduI	GDGCHC	3 cut(s)	68, 256, 490
SfcI	CTRYAG	2 cut(s)	793, 928
SfoI	GGCGCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	2 cut(s)	310, 866
SmlI	CTYRAG	2 cut(s)	693, 1035
SmoI	CTYRAG	2 cut(s)	693, 1035
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	372, 595
SseBI	AGGCCT	1 cut(s)	726
SspDI	GGCGCC	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	726
StyD4I	CCNGG	4 cut(s)	204, 482, 729, 1040
StyI	CCWWGG	4 cut(s)	84, 604, 640, 957
TaaI	ACNGT	1 cut(s)	417
TaiI	ACGT	3 cut(s)	173, 204, 219
TaqI	TCGA	4 cut(s)	23, 42, 259, 761
TasI	AATT	2 cut(s)	372, 595
TatI	WGTACW	3 cut(s)	412, 820, 876
TauI	GCSGC	6 cut(s)	8, 147, 150, 153, 156, 159
TfiI	GAWTC	2 cut(s)	280, 526
Tru1I	TTAA	2 cut(s)	404, 744
Tru9I	TTAA	2 cut(s)	404, 744
TscAI	CASTG	2 cut(s)	361, 477
TseI	GCWGC	4 cut(s)	443, 927, 930, 1059
TspDTI	ATGAA	5 cut(s)	258, 355, 884, 984, 1061
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	361, 477
Van91I	CCANNNNNTGG	2 cut(s)	205, 921
XapI	RAATTY	2 cut(s)	372, 595
XceI	RCATGY	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.