AT1G77930

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011707
Physical Location & Seq
Forward (+)
29300971 .. 29303570
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77930.2

Sequence Viewer

Length: 816 bp
ATGAGCAATCTTCGAGCTATCTGTAGACCATACTCTGTGTTCTCTTCGATTGTGTGTTGTAGTAGACATCAAAGTCGATCACTTTTTAGGGTTTCGATTAAAAACGTCGCCTTTAGAAACCAGAGTTCGAATTCGTCTTGGTTTAGGTCTAAAAATTCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGCCAAGAGAAATCTCCTTACGATACTCTCGAGTTGGATAGAAATGCAGAGGAAGAACAGATTAAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGGACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATTAAGATTCAGGCTGCATACGAGCTGCTCATGGACTCGGAAAAGAAAGTACAATATGATATGGATAACCGAGTTAATCCGATGAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGTAAAGCTTTTGATCAAAGGGGCGACATGGCGGTTGCCGCTTGGGCTGAGCAACAACAGCTTGATATAAACCTGCGTGCTCGTCGTCTTTCTCGTTCTAAAGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGAGAAGAAAGCATCGAGAGAGTTATTCAACAGCACTTTAAAGCGACACACGCTAGTGTTGAAGAAAAGAGATCTGATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCTATTAGCAGCAGAAGGTCTCGAGCTTGATACCGAAGCAGAAGAGGAAGAAGCAGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

271

Amino Acids

31.91

Weight (kDa)

9.51

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 77 - 144 5.7e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011707)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77930 AT1G77930 AT1G77930
fragaria_vesca FvH4_5g38391 FvH4_5g38391
malus_domestica MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica Prupe.1G508000_v2.0.a1
pyrus_communis pycom15g32240
rosa_chinensis RchiOBHm_Chr7g0240411
rosa_laevigata RLG00000000679
rosa_roxburghii Rroxscaffold_3G00220140
rosa_rugosa Rorug07G0335800
rosa_samantha Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana Rw7G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 576
AccI GTMKAC 2 cut(s) 25, 64
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 2 cut(s) 527, 534
AclWI GGATC 2 cut(s) 596, 609
AcsI RAATTY 3 cut(s) 130, 154, 302
AfaI GTAC 1 cut(s) 423
AgsI TTSAA 4 cut(s) 178, 344, 661, 694
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 8 cut(s) 17, 397, 470, 503, 556, 742, 754, 778
AluI AGCT 8 cut(s) 17, 397, 470, 503, 556, 742, 754, 778
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 347, 776
AlwI GGATC 2 cut(s) 596, 609
Ama87I CYCGRG 2 cut(s) 242, 773
Aor13HI TCCGGA 1 cut(s) 604
ApeKI GCWGC 4 cut(s) 386, 397, 761, 806
ApoI RAATTY 3 cut(s) 130, 154, 302
AsuII TTCGAA 2 cut(s) 128, 158
AvaI CYCGRG 2 cut(s) 242, 773
BamHI GGATCC 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 3 cut(s) 373, 384, 773
BccI CCATC 2 cut(s) 320, 469
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 347, 776
BfaI CTAG 2 cut(s) 194, 686
BfmI CTRYAG 1 cut(s) 22
BfuAI ACCTGC 1 cut(s) 576
BglI GCCNNNNNGGC 1 cut(s) 539
BglII AGATCT 1 cut(s) 703
BisI GCNGC 5 cut(s) 387, 398, 534, 762, 807
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 5 cut(s) 388, 399, 535, 763, 808
BmeT110I CYCGRG 2 cut(s) 242, 773
BmiI GGNNCC 2 cut(s) 215, 603
BmsI GCATC 4 cut(s) 212, 470, 653, 699
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu1102I GCTNAGC 1 cut(s) 543
Bpu14I TTCGAA 2 cut(s) 128, 158
BpuEI CTTGAG 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 776
BsaWI WCCGGW 1 cut(s) 604
BseAI TCCGGA 1 cut(s) 604
BseGI GGATG 2 cut(s) 310, 480
BseMII CTCAG 2 cut(s) 534, 764
BseXI GCAGC 3 cut(s) 373, 384, 773
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 2 cut(s) 242, 773
BsiSI CCGG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 347, 776
BsmFI GGGAC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 776
BsoBI CYCGRG 2 cut(s) 242, 773
Bsp119I TTCGAA 2 cut(s) 128, 158
Bsp1286I GDGCHC 1 cut(s) 577
Bsp13I TCCGGA 1 cut(s) 604
Bsp143I GATC 4 cut(s) 77, 508, 601, 703
Bsp1720I GCTNAGC 1 cut(s) 543
BspACI CCGC 2 cut(s) 527, 534
BspCNI CTCAG 2 cut(s) 535, 763
BspEI TCCGGA 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 215, 603
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 2 cut(s) 596, 609
BspT104I TTCGAA 2 cut(s) 128, 158
BspTNI GGTCTC 1 cut(s) 776
BssMI GATC 4 cut(s) 77, 508, 601, 703
Bst6I CTCTTC 2 cut(s) 49, 789
BstBI TTCGAA 2 cut(s) 128, 158
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 543, 750
BstF5I GGATG 2 cut(s) 310, 480
BstKTI GATC 4 cut(s) 80, 511, 604, 706
BstMAI GTCTC 2 cut(s) 347, 776
BstMBI GATC 4 cut(s) 77, 508, 601, 703
BstMWI GCNNNNNNNGC 5 cut(s) 467, 533, 539, 553, 682
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 3 cut(s) 373, 384, 773
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 2 cut(s) 601, 703
BstYI RGATCY 2 cut(s) 601, 703
BtsCI GGATG 2 cut(s) 310, 480
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 573
Csp6I GTAC 1 cut(s) 422
CviAII CATG 2 cut(s) 403, 523
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 2 cut(s) 543, 750
DpnI GATC 4 cut(s) 79, 510, 603, 705
DpnII GATC 4 cut(s) 77, 508, 601, 703
DraI TTTAAA 1 cut(s) 672
DrdI GACNNNNNNGTC 1 cut(s) 72
DseDI GACNNNNNNGTC 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 49, 789
EarI CTCTTC 2 cut(s) 49, 789
Eco31I GGTCTC 1 cut(s) 776
Eco88I CYCGRG 2 cut(s) 242, 773
EcoRI GAATTC 1 cut(s) 130
FaeI CATG 2 cut(s) 406, 526
FaiI YATR 9 cut(s) 31, 286, 324, 391, 404, 429, 434, 524, 563
FaqI GGGAC 1 cut(s) 349
FatI CATG 2 cut(s) 402, 522
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 2 cut(s) 25, 64
Fnu4HI GCNGC 5 cut(s) 387, 398, 534, 762, 807
FokI GGATG 2 cut(s) 297, 487
Fsp4HI GCNGC 5 cut(s) 387, 398, 534, 762, 807
FspBI CTAG 2 cut(s) 194, 686
GluI GCNGC 5 cut(s) 387, 398, 534, 762, 807
HapII CCGG 1 cut(s) 605
Hin1II CATG 2 cut(s) 406, 526
HindIII AAGCTT 2 cut(s) 468, 501
HinfI GANTC 7 cut(s) 160, 178, 190, 337, 369, 379, 407
HpaII CCGG 1 cut(s) 605
Hpy166II GTNNAC 2 cut(s) 26, 65
Hpy188I TCNGA 4 cut(s) 183, 412, 453, 708
Hpy188III TCNNGA 6 cut(s) 242, 314, 341, 605, 648, 773
Hpy8I GTNNAC 2 cut(s) 26, 65
Hpy99I CGWCG 2 cut(s) 110, 582
HpyAV CCTTC 4 cut(s) 341, 451, 625, 761
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 260, 389
HpyF10VI GCNNNNNNNGC 5 cut(s) 467, 533, 539, 553, 682
HpyF3I CTNAG 2 cut(s) 543, 750
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 2 cut(s) 406, 526
Kpn2I TCCGGA 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 4 cut(s) 77, 508, 601, 703
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 5 cut(s) 134, 327, 368, 581, 618
Lsp1109I GCAGC 3 cut(s) 373, 384, 773
LweI GCATC 4 cut(s) 212, 470, 653, 699
MaeI CTAG 2 cut(s) 194, 686
MaeII ACGT 1 cut(s) 105
MalI GATC 4 cut(s) 79, 510, 603, 705
MboI GATC 4 cut(s) 77, 508, 601, 703
MflI RGATCY 2 cut(s) 601, 703
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 4 cut(s) 130, 154, 208, 302
MlyI GAGTC 3 cut(s) 184, 331, 401
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 4 cut(s) 177, 256, 718, 790
MroI TCCGGA 1 cut(s) 604
MseI TTAA 5 cut(s) 99, 276, 375, 447, 671
MslI CAYNNNNRTG 2 cut(s) 315, 686
MspI CCGG 1 cut(s) 605
MwoI GCNNNNNNNGC 5 cut(s) 467, 533, 539, 553, 682
NdeII GATC 4 cut(s) 77, 508, 601, 703
NlaIII CATG 2 cut(s) 406, 526
NlaIV GGNNCC 2 cut(s) 215, 603
NspV TTCGAA 2 cut(s) 128, 158
OliI CACNNNNGTG 1 cut(s) 686
PaeR7I CTCGAG 2 cut(s) 242, 773
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 586
PfeI GAWTC 4 cut(s) 160, 178, 369, 379
PkrI GCNGC 5 cut(s) 388, 399, 535, 763, 808
PleI GAGTC 3 cut(s) 184, 331, 401
PpsI GAGTC 3 cut(s) 184, 331, 401
PspN4I GGNNCC 2 cut(s) 215, 603
PsuI RGATCY 2 cut(s) 601, 703
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 2 cut(s) 315, 686
SaqAI TTAA 5 cut(s) 99, 276, 375, 447, 671
SatI GCNGC 5 cut(s) 387, 398, 534, 762, 807
Sau3AI GATC 4 cut(s) 77, 508, 601, 703
SchI GAGTC 3 cut(s) 184, 331, 401
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 4 cut(s) 212, 470, 653, 699
SfcI CTRYAG 1 cut(s) 22
Sfr274I CTCGAG 2 cut(s) 242, 773
SfuI TTCGAA 2 cut(s) 128, 158
SlaI CTCGAG 2 cut(s) 242, 773
SmiMI CAYNNNNRTG 2 cut(s) 315, 686
SmlI CTYRAG 3 cut(s) 242, 465, 773
SmoI CTYRAG 3 cut(s) 242, 465, 773
Sse9I AATT 4 cut(s) 130, 154, 208, 302
SsiI CCGC 2 cut(s) 527, 534
SspMI CTAG 2 cut(s) 194, 686
TaiI ACGT 1 cut(s) 108
TasI AATT 4 cut(s) 130, 154, 208, 302
TatI WGTACW 1 cut(s) 421
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 4 cut(s) 160, 178, 369, 379
Tru1I TTAA 5 cut(s) 99, 276, 375, 447, 671
Tru9I TTAA 5 cut(s) 99, 276, 375, 447, 671
TseI GCWGC 4 cut(s) 386, 397, 761, 806
TspDTI ATGAA 3 cut(s) 361, 470, 503
XapI RAATTY 3 cut(s) 130, 154, 302
XhoI CTCGAG 2 cut(s) 242, 773
XmiI GTMKAC 2 cut(s) 25, 64
XspI CTAG 2 cut(s) 194, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.