Prupe.1G508000_v2.0.a1

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011707
Physical Location & Seq
Reverse (-)
41903063 .. 41905479
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G508000.1

Sequence Viewer

Length: 807 bp
ATGAGCAATTTGAGAACCATCTGTAGGCCACACACGGTCTTCACCTCCTTCATGTGTTGTAGACACCAAGCTCGCTTTAGCTCTAGGGTTTCATTTCGAAACCCTAATTACAACCCTCGTTTTGCGCCTGTGTCCGATTTTGCTAGATTGAATTGGAGCGGGTCCTGGTTCAGAGTGAATCAGAGGAGGACCATGGTTAAGGCATCCAATTGGGACCAACCCAAGTCTCCCTACGAAACTCTGGAACTAGAGAGGGACGCTGATGACGACCAGATCAAAATTGCTTACAGACGTTTGGCCAAATTTTATCACCCGGATGTCTATGATGGTAGAGGGACCCTAGAGGAGGGTGAAACAGCTGAAGCTAGATTTATAAAGATTCAAGCTGCTTATGAGTTGCTCATAGATGAAGACAGGAGGGGACAATATGATAGGGCTAACCGAGTCAACCCAATGAAAGCATCTCAAGCATGGATGGAGTGGCTAATGAAAAAGAGAAGAGCTTTTGATCAGCGAGGTGATATGGCAATAGCAGCTTGGGCAGAGCAACAGCAGCGTGAGCTGAATATTCGTGCACGTCGACTTTCTCGTTCCAAGGTTGACCCAGATGAAGAGAAAAGAATCCTAGCAAGAGAGAAAAAGGCCTCGGCTGAGTATTTCTCCAGTACCCTCAAGCGGCATACGCTAGTGCTAAAGAAAAGGGACATAATGAGAAGGAAAGCAGAGGAAGAGAAGAGAAAGATCATCGGTCAGCTTTTAGCGGCAGAGGGACTTGAGCTCGACACAGATGATGAAGAATCACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

269

Amino Acids

31.8

Weight (kDa)

9.68

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011707)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77930 AT1G77930 AT1G77930
fragaria_vesca FvH4_5g38391 FvH4_5g38391
malus_domestica MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica Prupe.1G508000_v2.0.a1
pyrus_communis pycom15g32240
rosa_chinensis RchiOBHm_Chr7g0240411
rosa_laevigata RLG00000000679
rosa_roxburghii Rroxscaffold_3G00220140
rosa_rugosa Rorug07G0335800
rosa_samantha Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana Rw7G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 2 cut(s) 61, 580
AciI CCGC 3 cut(s) 159, 676, 761
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 667
AfiI CCNNNNNNNGG 3 cut(s) 24, 346, 675
AgsI TTSAA 2 cut(s) 151, 383
AjiI CACGTC 1 cut(s) 578
AjnI CCWGG 1 cut(s) 164
Alw21I GWGCWC 2 cut(s) 577, 780
Alw26I GTCTC 1 cut(s) 231
Alw44I GTGCAC 1 cut(s) 573
AoxI GGCC 3 cut(s) 26, 297, 642
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 3 cut(s) 386, 533, 553
ApoI RAATTY 1 cut(s) 302
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 4 cut(s) 162, 189, 214, 336
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 4 cut(s) 34, 302, 362, 530
AsuII TTCGAA 1 cut(s) 97
AvaII GGWCC 4 cut(s) 162, 189, 214, 336
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 299
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 2 cut(s) 31, 417
Bbv12I GWGCWC 2 cut(s) 577, 780
BbvI GCAGC 3 cut(s) 373, 545, 565
BccI CCATC 3 cut(s) 26, 320, 469
BciT130I CCWGG 1 cut(s) 166
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 7 cut(s) 84, 144, 248, 341, 366, 626, 686
BfmI CTRYAG 1 cut(s) 22
BisI GCNGC 5 cut(s) 387, 534, 554, 677, 762
BlsI GCNGC 5 cut(s) 388, 535, 555, 678, 763
Bme1390I CCNGG 2 cut(s) 166, 314
Bme18I GGWCC 4 cut(s) 162, 189, 214, 336
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 4 cut(s) 162, 189, 214, 336
BmiI GGNNCC 4 cut(s) 163, 215, 337, 338
BmrFI CCNGG 2 cut(s) 166, 314
BmsI GCATC 2 cut(s) 212, 470
BpiI GAAGAC 2 cut(s) 31, 417
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BpmI CTGGAG 1 cut(s) 646
Bpu14I TTCGAA 1 cut(s) 97
BpuEI CTTGAG 3 cut(s) 450, 656, 794
BpuMI CCSGG 1 cut(s) 314
BsaJI CCNNGG 3 cut(s) 192, 594, 645
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 346, 675
Bse1I ACTGG 1 cut(s) 663
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 3 cut(s) 192, 594, 645
BseGI GGATG 3 cut(s) 203, 322, 480
BseLI CCNNNNNNNGG 3 cut(s) 24, 346, 675
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 2 cut(s) 199, 359
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 3 cut(s) 373, 545, 565
BshFI GGCC 3 cut(s) 28, 299, 644
BsiHKAI GWGCWC 2 cut(s) 577, 780
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 6 cut(s) 227, 269, 349, 435, 716, 783
BslI CCNNNNNNNGG 3 cut(s) 24, 346, 675
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 6 cut(s) 227, 269, 349, 435, 716, 783
BsnI GGCC 3 cut(s) 28, 299, 644
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 577, 780
Bsp143I GATC 3 cut(s) 273, 508, 741
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 3 cut(s) 159, 676, 761
BspANI GGCC 3 cut(s) 28, 299, 644
BspCNI CTCAG 1 cut(s) 643
BspLI GGNNCC 4 cut(s) 163, 215, 337, 338
BspQI GCTCTTC 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 663
BssECI CCNNGG 3 cut(s) 192, 594, 645
BssMI GATC 3 cut(s) 273, 508, 741
BssT1I CCWWGG 2 cut(s) 192, 594
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 37, 804
Bst6I CTCTTC 4 cut(s) 493, 606, 723, 728
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 651
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 3 cut(s) 203, 322, 480
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 3 cut(s) 276, 511, 744
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 273, 508, 741
BstMWI GCNNNNNNNGC 6 cut(s) 467, 533, 539, 553, 559, 682
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 164, 312
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 577
BstV1I GCAGC 3 cut(s) 373, 545, 565
BstV2I GAAGAC 2 cut(s) 31, 417
BsuRI GGCC 3 cut(s) 28, 299, 644
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 3 cut(s) 203, 322, 480
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 4 cut(s) 162, 189, 214, 336
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 666
CviAII CATG 3 cut(s) 52, 193, 471
CviQI GTAC 1 cut(s) 666
DdeI CTNAG 1 cut(s) 651
DpnI GATC 3 cut(s) 275, 510, 743
DpnII GATC 3 cut(s) 273, 508, 741
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 4 cut(s) 493, 606, 723, 728
EarI CTCTTC 4 cut(s) 493, 606, 723, 728
Ecl136II GAGCTC 1 cut(s) 778
Eco130I CCWWGG 2 cut(s) 192, 594
Eco147I AGGCCT 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 780
Eco47I GGWCC 4 cut(s) 162, 189, 214, 336
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 778
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 2 cut(s) 162, 336
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 192, 594
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 2 cut(s) 192, 594
FaeI CATG 3 cut(s) 55, 196, 474
FaqI GGGAC 6 cut(s) 227, 269, 349, 435, 716, 783
FatI CATG 3 cut(s) 51, 192, 470
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 2 cut(s) 61, 580
Fnu4HI GCNGC 5 cut(s) 387, 534, 554, 677, 762
FokI GGATG 3 cut(s) 190, 329, 487
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 5 cut(s) 387, 534, 554, 677, 762
FspBI CTAG 7 cut(s) 84, 144, 248, 341, 366, 626, 686
GlaI GCGC 1 cut(s) 126
GluI GCNGC 5 cut(s) 387, 534, 554, 677, 762
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 3 cut(s) 28, 299, 644
HapII CCGG 1 cut(s) 314
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 127
Hin1II CATG 3 cut(s) 55, 196, 474
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 3 cut(s) 448, 581, 601
HindII GTYRAC 3 cut(s) 448, 581, 601
HinfI GANTC 5 cut(s) 178, 379, 444, 621, 797
HpaII CCGG 1 cut(s) 314
HphI GGTGA 4 cut(s) 34, 302, 362, 530
Hpy166II GTNNAC 5 cut(s) 62, 448, 575, 581, 601
Hpy188I TCNGA 3 cut(s) 136, 173, 183
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 5 cut(s) 62, 448, 575, 581, 601
Hpy99I CGWCG 1 cut(s) 582
HpyAV CCTTC 2 cut(s) 58, 708
HpyCH4III ACNGT 2 cut(s) 37, 804
HpyCH4IV ACGT 2 cut(s) 292, 577
HpyCH4V TGCA 1 cut(s) 575
HpyF10VI GCNNNNNNNGC 6 cut(s) 467, 533, 539, 553, 559, 682
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 2 cut(s) 292, 577
Hsp92II CATG 3 cut(s) 55, 196, 474
HspAI GCGC 1 cut(s) 125
KflI GGGWCCC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 3 cut(s) 273, 508, 741
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 9 cut(s) 141, 151, 178, 227, 284, 327, 400, 618, 676
Lsp1109I GCAGC 3 cut(s) 373, 545, 565
LweI GCATC 2 cut(s) 212, 470
MaeI CTAG 7 cut(s) 84, 144, 248, 341, 366, 626, 686
MaeII ACGT 2 cut(s) 292, 577
MalI GATC 3 cut(s) 275, 510, 743
MbiI CCGCTC 1 cut(s) 159
MboI GATC 3 cut(s) 273, 508, 741
MboII GAAGA 7 cut(s) 31, 422, 510, 623, 740, 745, 806
MfeI CAATTG 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 577, 780
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 6 cut(s) 7, 106, 151, 208, 279, 302
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 1 cut(s) 453
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 166, 314
MunI CAATTG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 6 cut(s) 467, 533, 539, 553, 559, 682
NciI CCSGG 1 cut(s) 314
NcoI CCATGG 1 cut(s) 192
NdeII GATC 3 cut(s) 273, 508, 741
NlaIII CATG 3 cut(s) 55, 196, 474
NlaIV GGNNCC 4 cut(s) 163, 215, 337, 338
NmeAIII GCCGAG 1 cut(s) 626
NspV TTCGAA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 3 cut(s) 264, 577, 586
PfeI GAWTC 4 cut(s) 178, 379, 621, 797
PkrI GCNGC 5 cut(s) 388, 535, 555, 678, 763
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PpuMI RGGWCCY 2 cut(s) 162, 336
PsiI TTATAA 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 780
Psp5II RGGWCCY 2 cut(s) 162, 336
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 4 cut(s) 163, 215, 337, 338
PspPI GGNCC 4 cut(s) 162, 189, 214, 336
PspPPI RGGWCCY 2 cut(s) 162, 336
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 667
RsaNI GTAC 1 cut(s) 666
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 780
SalI GTCGAC 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 5 cut(s) 387, 534, 554, 677, 762
Sau3AI GATC 3 cut(s) 273, 508, 741
Sau96I GGNCC 4 cut(s) 162, 189, 214, 336
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 2 cut(s) 166, 314
SduI GDGCHC 2 cut(s) 577, 780
SfaNI GCATC 2 cut(s) 212, 470
SfcI CTRYAG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 97
SinI GGWCC 4 cut(s) 162, 189, 214, 336
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 3 cut(s) 465, 671, 773
SmoI CTYRAG 3 cut(s) 465, 671, 773
Sse9I AATT 6 cut(s) 7, 106, 151, 208, 279, 302
SseBI AGGCCT 1 cut(s) 644
SsiI CCGC 3 cut(s) 159, 676, 761
SspI AATATT 1 cut(s) 568
SspMI CTAG 7 cut(s) 84, 144, 248, 341, 366, 626, 686
SstI GAGCTC 1 cut(s) 780
StuI AGGCCT 1 cut(s) 644
StyD4I CCNGG 2 cut(s) 164, 312
StyI CCWWGG 2 cut(s) 192, 594
TaaI ACNGT 2 cut(s) 37, 804
TaiI ACGT 2 cut(s) 295, 580
TaqI TCGA 3 cut(s) 97, 580, 780
TaqII GACCGA 1 cut(s) 737
TasI AATT 6 cut(s) 7, 106, 151, 208, 279, 302
TauI GCSGC 2 cut(s) 679, 764
TfiI GAWTC 4 cut(s) 178, 379, 621, 797
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 3 cut(s) 386, 533, 553
TspDTI ATGAA 7 cut(s) 40, 81, 423, 470, 503, 624, 807
VneI GTGCAC 1 cut(s) 573
VpaK11BI GGWCC 4 cut(s) 162, 189, 214, 336
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 302
XmiI GTMKAC 2 cut(s) 61, 580
XspI CTAG 7 cut(s) 84, 144, 248, 341, 366, 626, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.