Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011707

Physical Location & Seq

Genomic Coordinates Reverse (-)

31164565 .. 31166775

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGGATATACGAGCCATTCCGCCAAATTGGTGTGTGGAAAGAAACCTTCAGAGGTGATCACACCTCTAACACAGCTGCTTCCACAATTCTAGAAGAGGATTCTGGTATCGAAAACAAGATTGGATTTGTTTCTCATGAACCCATGCTGCCTTCCGGAAACGGAAATGATCACGAACCGAGCAGATCTGCTGATAAGGTGCAGAGACGGTTAGAACAAAATCGTGAAGCTGCACGAAAGAGTCGTATGCGAAAAAAGGTTTATGTTCAACAACTCGAAACAAGCCGCTTAAAATTGGCACAGCTGGAACTGGAAATTGACAGAGTTAGAAAACGGGGTGCCTATGCAAGCAGTTCATTAGGTACTAGCCATATGGGATACAATGGAGCTTTGAATTCAGGGATCACTACATTTGAGATGGAATATGTACACTGGGTTGAAGAACAACACAGACAAATTGTTGAACTCAGAAATGCACTGCATGATCATGCAACAGACATAGAACTTCAAAAACTCGTAGACAGTGGCTTGAACCACTATGCCATTCTTTTCCGAATGAAGGCAGATGCTGCAAGGGCTGATATCTTTTACTTACTGTCTGGCATATGGAGAACACCAGTCGAACGCCATTTTCATTGGATTGGTGGATTTCGCCCGTCGGAGCTGCTAAATATTGTGTTGCCACAGCTTCAACCATTAACTGATCAACAACTTCCGGACTTCTATAACCTGCAGCAATCGTCACAGCAAGCGGAGGATGCGCTATCACAGGGAATGGACAAACTGCAGCAGATTCTGGCATTGAGCATAGCAGCTGATCAAATGAGTGGAGAAAGTTTTGGGTGTCAGATGACTTCTGCACTTGAGAAGCTTGAAGCACTAGAGAGCTTCGTGAGCCAGGCAGATCACCTTCGGCAGCAAACGCTGCAGCAAATGTCTCGAATCCTCACAACACACCAAGCAGCGGAAGGCTTGCTTGCACTGGGGGAGTACTTTCACCGGTTACGTGCCCTCAGTTCTATATGGACTGCTCGTCCCCGTAAACCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

351

Amino Acids

39.84

Weight (kDa)

6.4

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77930 AT1G77930 AT1G77930
fragaria_vesca	FvH4_5g38391 FvH4_5g38391
malus_domestica	MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica	Prupe.1G508000_v2.0.a1
pyrus_communis	pycom15g32240
rosa_chinensis	RchiOBHm_Chr7g0240411
rosa_laevigata	RLG00000000679
rosa_roxburghii	Rroxscaffold_3G00220140
rosa_rugosa	Rorug07G0335800
rosa_samantha	Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana	Rw7G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	519
AccIII	TCCGGA	2 cut(s)	155, 715
AciI	CCGC	4 cut(s)	22, 286, 752, 965
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	34
AfaI	GTAC	3 cut(s)	364, 429, 992
AfiI	CCNNNNNNNGG	2 cut(s)	559, 964
AgeI	ACCGGT	1 cut(s)	999
AgsI	TTSAA	8 cut(s)	269, 394, 440, 464, 509, 532, 692, 875
AhdI	GACNNNNNGTC	1 cut(s)	1032
AjnI	CCWGG	1 cut(s)	897
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	9 cut(s)	77, 230, 304, 389, 664, 688, 815, 871, 888
AluI	AGCT	9 cut(s)	77, 230, 304, 389, 664, 688, 815, 871, 888
Alw26I	GTCTC	2 cut(s)	199, 942
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	2 cut(s)	569, 796
Aor13HI	TCCGGA	2 cut(s)	155, 715
ApoI	RAATTY	1 cut(s)	394
AsiGI	ACCGGT	1 cut(s)	999
AspLEI	GCGC	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	68, 899, 989
BaeGI	GKGCMC	1 cut(s)	1012
BanI	GGYRCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BciT130I	CCWGG	1 cut(s)	899
BciVI	GTATCC	1 cut(s)	371
BclI	TGATCA	5 cut(s)	58, 169, 484, 703, 817
BcoDI	GTCTC	2 cut(s)	199, 942
BfaI	CTAG	3 cut(s)	92, 366, 881
BfmI	CTRYAG	3 cut(s)	731, 785, 926
BfuAI	ACCTGC	1 cut(s)	738
BfuI	GTATCC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	185
BmcAI	AGTACT	1 cut(s)	992
Bme1390I	CCNGG	1 cut(s)	899
BmeRI	GACNNNNNGTC	1 cut(s)	1032
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	899
BmrI	ACTGGG	2 cut(s)	442, 992
BmsI	GCATC	2 cut(s)	556, 748
BmuI	ACTGGG	2 cut(s)	442, 992
BpuEI	CTTGAG	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	1007
BsaWI	WCCGGW	3 cut(s)	155, 715, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 964
Bse118I	RCCGGY	1 cut(s)	999
Bse1I	ACTGG	4 cut(s)	315, 437, 617, 987
BseAI	TCCGGA	2 cut(s)	155, 715
BseBI	CCWGG	1 cut(s)	899
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	2 cut(s)	559, 964
BseMII	CTCAG	2 cut(s)	481, 1027
BseNI	ACTGG	4 cut(s)	315, 437, 617, 987
BseSI	GKGCMC	1 cut(s)	1012
BsgI	GTGCAG	3 cut(s)	216, 221, 843
BshNI	GGYRCC	1 cut(s)	338
BshTI	ACCGGT	1 cut(s)	999
BsiSI	CCGG	3 cut(s)	156, 716, 1000
BslFI	GGGAC	1 cut(s)	1020
BslI	CCNNNNNNNGG	2 cut(s)	559, 964
BsmAI	GTCTC	2 cut(s)	199, 942
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	1020
Bsp1286I	GDGCHC	1 cut(s)	1012
Bsp13I	TCCGGA	2 cut(s)	155, 715
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
BspACI	CCGC	4 cut(s)	22, 286, 752, 965
BspCNI	CTCAG	2 cut(s)	480, 1026
BspEI	TCCGGA	2 cut(s)	155, 715
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	3 cut(s)	735, 789, 930
BspMI	ACCTGC	1 cut(s)	738
BspPI	GGATC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	999
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	4 cut(s)	315, 437, 617, 987
BssAI	RCCGGY	1 cut(s)	999
BssMI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	3 cut(s)	210, 524, 597
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	2 cut(s)	569, 925
BstAUI	TGTACA	1 cut(s)	427
BstBAI	YACGTR	1 cut(s)	1007
BstC8I	GCNNGC	4 cut(s)	349, 750, 974, 978
BstDEI	CTNAG	2 cut(s)	467, 1013
BstF5I	GGATG	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	8 cut(s)	61, 172, 188, 405, 487, 706, 820, 907
BstMAI	GTCTC	2 cut(s)	199, 942
BstMBI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
BstMWI	GCNNNNNNNGC	6 cut(s)	569, 575, 758, 894, 922, 925
BstNI	CCWGG	1 cut(s)	899
BstSCI	CCNGG	1 cut(s)	897
BstSFI	CTRYAG	3 cut(s)	731, 785, 926
BstSLI	GKGCMC	1 cut(s)	1012
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	763
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	4 cut(s)	430, 476, 529, 980
BveI	ACCTGC	1 cut(s)	738
Cac8I	GCNNGC	4 cut(s)	349, 750, 974, 978
CaiI	CAGNNNCTG	2 cut(s)	569, 796
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	763
Cfr10I	RCCGGY	1 cut(s)	999
Csp6I	GTAC	3 cut(s)	363, 428, 991
CspAI	ACCGGT	1 cut(s)	999
CviAII	CATG	4 cut(s)	137, 145, 482, 488
CviQI	GTAC	3 cut(s)	363, 428, 991
DdeI	CTNAG	2 cut(s)	467, 1013
DpnI	GATC	8 cut(s)	60, 171, 187, 404, 486, 705, 819, 906
DpnII	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
DriI	GACNNNNNGTC	1 cut(s)	1032
Eam1104I	CTCTTC	1 cut(s)	90
Eam1105I	GACNNNNNGTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	897
EcoRV	GATATC	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	4 cut(s)	140, 148, 485, 491
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	1 cut(s)	1020
FatI	CATG	4 cut(s)	136, 144, 481, 487
FauNDI	CATATG	2 cut(s)	372, 605
FbaI	TGATCA	5 cut(s)	58, 169, 484, 703, 817
FblI	GTMKAC	1 cut(s)	519
FokI	GGATG	1 cut(s)	770
FspBI	CTAG	3 cut(s)	92, 366, 881
GlaI	GCGC	1 cut(s)	762
HapII	CCGG	3 cut(s)	156, 716, 1000
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	4 cut(s)	140, 148, 485, 491
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	4 cut(s)	101, 241, 793, 942
HpaII	CCGG	3 cut(s)	156, 716, 1000
HphI	GGTGA	3 cut(s)	68, 899, 989
Hpy166II	GTNNAC	3 cut(s)	430, 520, 1043
Hpy188I	TCNGA	5 cut(s)	53, 470, 554, 661, 849
Hpy188III	TCNNGA	8 cut(s)	92, 137, 156, 173, 224, 716, 892, 939
Hpy8I	GTNNAC	3 cut(s)	430, 520, 1043
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	5 cut(s)	58, 162, 553, 920, 962
HpyCH4III	ACNGT	3 cut(s)	210, 524, 597
HpyCH4IV	ACGT	1 cut(s)	1006
HpyF10VI	GCNNNNNNNGC	6 cut(s)	569, 575, 758, 894, 922, 925
HpyF3I	CTNAG	2 cut(s)	467, 1013
HpySE526I	ACGT	1 cut(s)	1006
Hsp92II	CATG	4 cut(s)	140, 148, 485, 491
HspAI	GCGC	1 cut(s)	761
Kpn2I	TCCGGA	2 cut(s)	155, 715
Ksp22I	TGATCA	5 cut(s)	58, 169, 484, 703, 817
Kzo9I	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
LmnI	GCTCC	2 cut(s)	386, 661
LweI	GCATC	2 cut(s)	556, 748
MaeI	CTAG	3 cut(s)	92, 366, 881
MaeII	ACGT	1 cut(s)	1006
MaeIII	GTNAC	2 cut(s)	741, 1002
MalI	GATC	8 cut(s)	60, 171, 187, 404, 486, 705, 819, 906
MboI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
MboII	GAAGA	2 cut(s)	107, 452
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	1012
MluCI	AATT	6 cut(s)	27, 87, 293, 315, 394, 456
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	6 cut(s)	47, 76, 91, 748, 956, 1022
MroI	TCCGGA	2 cut(s)	155, 715
MseI	TTAA	2 cut(s)	290, 698
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	4 cut(s)	77, 304, 815, 965
MspI	CCGG	3 cut(s)	156, 716, 1000
MspR9I	CCNGG	1 cut(s)	899
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	6 cut(s)	569, 575, 758, 894, 922, 925
NdeI	CATATG	2 cut(s)	372, 605
NdeII	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
NlaIII	CATG	4 cut(s)	140, 148, 485, 491
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	741
PagI	TCATGA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	101, 793, 942
PinAI	ACCGGT	1 cut(s)	999
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	1007
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspN4I	GGNNCC	1 cut(s)	340
PstI	CTGCAG	3 cut(s)	735, 789, 930
PstNI	CAGNNNCTG	2 cut(s)	569, 796
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	3 cut(s)	77, 304, 815
RsaI	GTAC	3 cut(s)	364, 429, 992
RsaNI	GTAC	3 cut(s)	363, 428, 991
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	290, 698
Sau3AI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
ScaI	AGTACT	1 cut(s)	992
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	899
SduI	GDGCHC	1 cut(s)	1012
SfaNI	GCATC	2 cut(s)	556, 748
SfcI	CTRYAG	3 cut(s)	731, 785, 926
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	27, 87, 293, 315, 394, 456
SsiI	CCGC	4 cut(s)	22, 286, 752, 965
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	3 cut(s)	92, 366, 881
StyD4I	CCNGG	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	210, 524, 597
TaiI	ACGT	1 cut(s)	1009
TaqI	TCGA	4 cut(s)	111, 276, 621, 940
TasI	AATT	6 cut(s)	27, 87, 293, 315, 394, 456
TatI	WGTACW	2 cut(s)	427, 990
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	101, 793, 942
Tru1I	TTAA	2 cut(s)	290, 698
Tru9I	TTAA	2 cut(s)	290, 698
TscAI	CASTG	4 cut(s)	437, 483, 529, 987
TseFI	GTSAC	1 cut(s)	741
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	4 cut(s)	153, 345, 572, 623
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	4 cut(s)	437, 483, 529, 987
XapI	RAATTY	1 cut(s)	394
XbaI	TCTAGA	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	3 cut(s)	92, 366, 881
ZrmI	AGTACT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.