FvH4_5g38391

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011707
Physical Location & Seq
Forward (+)
28381899 .. 28384318
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38391.t1

Sequence Viewer

Length: 816 bp
ATGAGTAATTTGAGGACCATCTGCAGGCCACACGCCGTCTTCACCTCCTTCGTATGTTGCAGACACCAAGCTCGCTTCAGCTCCAGGGTTTCTTTTCAGCGAAACCCTAATCACTCACCTAGTCTTTCGCCTGCGTCATCTTCCGATTTCGTGAGATTGAATCGGAGCGAGTCGTGGTTCAGAGCGAACCAGAGAAGGTCCATGATTAGGGCTTCGAATTGGACCCACCCCAAGTCTCCCTATGAAACTCTTGAATTAGAGATGGATGCTGATGATGATCAGATAAAGGTGGCTTACAGAAGATTGGCCAAGTTTTATCATCCTGATGTCTATGATGGCAGAGGGACCCTGGAGGAGGGGGAAACAGCTGAAGCTAGGTTTATCAAGATTCAAGCTGCTTATGAATTGCTTTTGGAGGTCGAGAAGAGGGGCCAATATGACAGGGATAACCGAGTCAACCCATTGAAAGCATCTGAAGCATGGATGGCGTGGCTAATGAAAAAGCGAAAAGCTTTTGATCAGCGAGGTGATATGGCAATAGCGGCTTGGGCTGAGCAACAGCAGCGTGAGATGAATATCCGTGCACGTCGACTTTCTCGTTCTAAGGTCGACCCTGATGAAGAGAAGAAAATCCTGGCGAGAGAAAAGAAGGCATCTGCAGAGTATTTCTCCAGTACACTAAAGCGGCATACACTAGTCTTAAAGAAACGAGATCTCATGAGAAGGAAAGCAGAGGAAGATAAGAGGAAGATCATTGGTCAGCTCTTAGCTGCAGAAGGACTCGAGCTTGACACGGATGACGAAGAAAATCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

272

Amino Acids

31.81

Weight (kDa)

9.58

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 80 - 147 1.6e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011707)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77930 AT1G77930 AT1G77930
fragaria_vesca FvH4_5g38391 FvH4_5g38391
malus_domestica MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica Prupe.1G508000_v2.0.a1
pyrus_communis pycom15g32240
rosa_chinensis RchiOBHm_Chr7g0240411
rosa_laevigata RLG00000000679
rosa_roxburghii Rroxscaffold_3G00220140
rosa_rugosa Rorug07G0335800
rosa_samantha Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana Rw7G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 589, 609
AciI CCGC 2 cut(s) 542, 685
AcoI YGGCCR 1 cut(s) 306
AcuI CTGAAG 3 cut(s) 61, 390, 495
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 3 cut(s) 24, 207, 355
AgsI TTSAA 4 cut(s) 160, 254, 392, 466
AhlI ACTAGT 1 cut(s) 694
AjiI CACGTC 1 cut(s) 587
AjnI CCWGG 3 cut(s) 83, 348, 633
AluBI AGCT 9 cut(s) 71, 81, 368, 374, 395, 512, 763, 770, 787
AluI AGCT 9 cut(s) 71, 81, 368, 374, 395, 512, 763, 770, 787
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 240
Alw44I GTGCAC 1 cut(s) 582
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 3 cut(s) 26, 306, 430
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 395, 562, 770
AspS9I GGNCC 5 cut(s) 15, 198, 222, 345, 430
AsuHPI GGTGA 3 cut(s) 34, 108, 539
AsuII TTCGAA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 4 cut(s) 15, 198, 222, 345
BaeGI GKGCMC 1 cut(s) 586
BalI TGGCCA 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 3 cut(s) 382, 574, 757
BccI CCATC 4 cut(s) 26, 256, 329, 478
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 3 cut(s) 85, 350, 635
BclI TGATCA 2 cut(s) 277, 517
BcoDI GTCTC 1 cut(s) 240
BcuI ACTAGT 1 cut(s) 694
BfaI CTAG 3 cut(s) 120, 375, 695
BfmI CTRYAG 3 cut(s) 22, 657, 771
BglII AGATCT 1 cut(s) 712
BisI GCNGC 5 cut(s) 396, 543, 563, 686, 771
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 5 cut(s) 397, 544, 564, 687, 772
Bme1390I CCNGG 3 cut(s) 85, 350, 635
Bme18I GGWCC 4 cut(s) 15, 198, 222, 345
BmeT110I CYCGRG 1 cut(s) 782
BmgBI CACGTC 1 cut(s) 587
BmgT120I GGNCC 5 cut(s) 15, 198, 222, 345, 430
BmiI GGNNCC 4 cut(s) 224, 346, 347, 431
BmrFI CCNGG 3 cut(s) 85, 350, 635
BmsI GCATC 3 cut(s) 256, 479, 662
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpmI CTGGAG 3 cut(s) 67, 371, 655
Bpu1102I GCTNAGC 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 215
BsaBI GATNNNNATC 2 cut(s) 276, 575
BsaJI CCNNGG 2 cut(s) 84, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 207, 355
Bse1I ACTGG 1 cut(s) 672
Bse8I GATNNNNATC 2 cut(s) 276, 575
BseBI CCWGG 3 cut(s) 85, 350, 635
BseDI CCNNGG 2 cut(s) 84, 348
BseGI GGATG 4 cut(s) 271, 319, 489, 802
BseJI GATNNNNATC 2 cut(s) 276, 575
BseLI CCNNNNNNNGG 3 cut(s) 24, 207, 355
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 3 cut(s) 382, 574, 757
BshFI GGCC 3 cut(s) 28, 308, 432
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 782
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 3 cut(s) 24, 207, 355
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 3 cut(s) 28, 308, 432
BsoBI CYCGRG 1 cut(s) 782
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 4 cut(s) 277, 517, 712, 750
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 2 cut(s) 542, 685
BspANI GGCC 3 cut(s) 28, 308, 432
BspCNI CTCAG 1 cut(s) 544
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 4 cut(s) 224, 346, 347, 431
BspMAI CTGCAG 3 cut(s) 26, 661, 775
BspT104I TTCGAA 1 cut(s) 215
BsrI ACTGG 1 cut(s) 672
BssECI CCNNGG 2 cut(s) 84, 348
BssMI GATC 4 cut(s) 277, 517, 712, 750
Bst2UI CCWGG 3 cut(s) 85, 350, 635
Bst6I CTCTTC 2 cut(s) 419, 615
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 26, 73, 132
BstDEI CTNAG 3 cut(s) 552, 603, 766
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 4 cut(s) 271, 319, 489, 802
BstKTI GATC 4 cut(s) 280, 520, 715, 753
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 4 cut(s) 277, 517, 712, 750
BstMWI GCNNNNNNNGC 5 cut(s) 476, 485, 542, 548, 562
BstNI CCWGG 3 cut(s) 85, 350, 635
BstSCI CCNGG 3 cut(s) 83, 348, 633
BstSFI CTRYAG 3 cut(s) 22, 657, 771
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 3 cut(s) 382, 574, 757
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BsuRI GGCC 3 cut(s) 28, 308, 432
BtrI CACGTC 1 cut(s) 587
BtsCI GGATG 4 cut(s) 271, 319, 489, 802
Cac8I GCNNGC 3 cut(s) 26, 73, 132
CciI TCATGA 1 cut(s) 717
Cfr13I GGNCC 5 cut(s) 15, 198, 222, 345, 430
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 675
CviAII CATG 3 cut(s) 202, 480, 718
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 3 cut(s) 552, 603, 766
DpnI GATC 4 cut(s) 279, 519, 714, 752
DpnII GATC 4 cut(s) 277, 517, 712, 750
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 419, 615
EarI CTCTTC 2 cut(s) 419, 615
Eco47I GGWCC 4 cut(s) 15, 198, 222, 345
Eco57I CTGAAG 3 cut(s) 61, 390, 495
Eco88I CYCGRG 1 cut(s) 782
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 345
EcoRII CCWGG 3 cut(s) 83, 348, 633
FaeI CATG 3 cut(s) 205, 483, 721
FaqI GGGAC 1 cut(s) 358
FatI CATG 3 cut(s) 201, 479, 717
FbaI TGATCA 2 cut(s) 277, 517
FblI GTMKAC 2 cut(s) 589, 609
Fnu4HI GCNGC 5 cut(s) 396, 543, 563, 686, 771
FokI GGATG 4 cut(s) 278, 306, 496, 809
Fsp4HI GCNGC 5 cut(s) 396, 543, 563, 686, 771
FspBI CTAG 3 cut(s) 120, 375, 695
GluI GCNGC 5 cut(s) 396, 543, 563, 686, 771
GsuI CTGGAG 3 cut(s) 67, 371, 655
HaeIII GGCC 3 cut(s) 28, 308, 432
HgaI GACGC 1 cut(s) 123
Hin1II CATG 3 cut(s) 205, 483, 721
HincII GTYRAC 3 cut(s) 457, 590, 610
HindII GTYRAC 3 cut(s) 457, 590, 610
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 5 cut(s) 160, 170, 388, 453, 780
HphI GGTGA 3 cut(s) 34, 108, 539
Hpy166II GTNNAC 5 cut(s) 457, 584, 590, 610, 677
Hpy188I TCNGA 5 cut(s) 145, 165, 182, 282, 475
Hpy188III TCNNGA 6 cut(s) 151, 251, 323, 385, 421, 718
Hpy8I GTNNAC 5 cut(s) 457, 584, 590, 610, 677
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 5 cut(s) 58, 189, 643, 717, 770
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 5 cut(s) 24, 60, 584, 659, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 485, 542, 548, 562
HpyF3I CTNAG 3 cut(s) 552, 603, 766
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 3 cut(s) 205, 483, 721
KflI GGGWCCC 1 cut(s) 345
Ksp22I TGATCA 2 cut(s) 277, 517
Kzo9I GATC 4 cut(s) 277, 517, 712, 750
LmnI GCTCC 2 cut(s) 86, 165
Lsp1109I GCAGC 3 cut(s) 382, 574, 757
LweI GCATC 3 cut(s) 256, 479, 662
MaeI CTAG 3 cut(s) 120, 375, 695
MaeII ACGT 1 cut(s) 586
MalI GATC 4 cut(s) 279, 519, 714, 752
MboI GATC 4 cut(s) 277, 517, 712, 750
MboII GAAGA 9 cut(s) 31, 132, 312, 436, 632, 637, 749, 760, 815
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 1 cut(s) 586
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 4 cut(s) 7, 217, 254, 404
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 3 cut(s) 179, 462, 774
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 701
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 368
MspR9I CCNGG 3 cut(s) 85, 350, 635
MvaI CCWGG 3 cut(s) 85, 350, 635
MwoI GCNNNNNNNGC 5 cut(s) 476, 485, 542, 548, 562
NdeII GATC 4 cut(s) 277, 517, 712, 750
NlaIII CATG 3 cut(s) 205, 483, 721
NlaIV GGNNCC 4 cut(s) 224, 346, 347, 431
NspV TTCGAA 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 782
PagI TCATGA 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PfeI GAWTC 2 cut(s) 160, 388
PkrI GCNGC 5 cut(s) 397, 544, 564, 687, 772
PleI GAGTC 3 cut(s) 178, 461, 774
PpsI GAGTC 3 cut(s) 178, 461, 774
PpuMI RGGWCCY 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 83, 348, 633
PspGI CCWGG 3 cut(s) 83, 348, 633
PspN4I GGNNCC 4 cut(s) 224, 346, 347, 431
PspPI GGNCC 5 cut(s) 15, 198, 222, 345, 430
PspPPI RGGWCCY 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 782
PstI CTGCAG 3 cut(s) 26, 661, 775
PsuI RGATCY 1 cut(s) 712
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 1 cut(s) 324
SalI GTCGAC 2 cut(s) 588, 608
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 5 cut(s) 396, 543, 563, 686, 771
Sau3AI GATC 4 cut(s) 277, 517, 712, 750
Sau96I GGNCC 5 cut(s) 15, 198, 222, 345, 430
SchI GAGTC 3 cut(s) 179, 462, 774
ScrFI CCNGG 3 cut(s) 85, 350, 635
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 3 cut(s) 256, 479, 662
SfcI CTRYAG 3 cut(s) 22, 657, 771
Sfr274I CTCGAG 1 cut(s) 782
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 4 cut(s) 15, 198, 222, 345
SlaI CTCGAG 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SpeI ACTAGT 1 cut(s) 694
Sse9I AATT 4 cut(s) 7, 217, 254, 404
SsiI CCGC 2 cut(s) 542, 685
SspMI CTAG 3 cut(s) 120, 375, 695
StyD4I CCNGG 3 cut(s) 83, 348, 633
TaiI ACGT 1 cut(s) 589
TaqI TCGA 5 cut(s) 215, 420, 589, 609, 783
TasI AATT 4 cut(s) 7, 217, 254, 404
TatI WGTACW 1 cut(s) 674
TauI GCSGC 2 cut(s) 545, 688
TfiI GAWTC 2 cut(s) 160, 388
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TseI GCWGC 3 cut(s) 395, 562, 770
TspDTI ATGAA 5 cut(s) 258, 417, 512, 587, 633
TspGWI ACGGA 2 cut(s) 569, 809
VneI GTGCAC 1 cut(s) 582
VpaK11BI GGWCC 4 cut(s) 15, 198, 222, 345
XagI CCTNNNNNAGG 1 cut(s) 353
XhoI CTCGAG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 589, 609
XspI CTAG 3 cut(s) 120, 375, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.