Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011707

Physical Location & Seq

Genomic Coordinates Reverse (-)

43422393 .. 43425706

Gene Structure 3314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1360600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGGATATACGAGCCATTCCGCCAAATTGGTGTGTGGAAAGAAACCTTCAGAGGTGATCACACCTCTAACACAGCTGCTTCCACAATTCTAGAAGAGGATTCTGGTATCGAAAACAAGATTGGATTTGTTTCTCATGAACCCATGCTGCCTTCCGGAAACGGAAATGATCACGAACCGAGCAGATCTGCTGATAAGGTGCAGAGACGGTTAGAACAAAATCGTGAAGCTGCACGGAAGAGTCGTATGCGAAAAAAGGCTTATGTTCAACAACTCGAAACAAGCCGCTTAAAATTGGCACAGCTGGAGCTGGAAATTGACAGAGCTAGAAAACAGGGTGCCTATGCAAGCAGTTCATTAGGTACTAGCCATATGGGATACAATGGAGCTTTGAATTCAGGGATCACTACATTTGAGATGGAATATGGACACTGGGTTGAAGAACAACACAGACAAATTGTTGAGCTCAGAAATGCACTGAATGATCGTGCAACAGACATAGAACTTCGAAAACTCGTAGACTGTGGCTTGAACCACTATGCCATTCTTTTCCGAATGAAGGCAGATGCTGCAAGGGTTGATATCTTTTACTTACTGTCTGGCATATGGAGAACATCAGTCGAACGCCATTTTCATTGGATTGGTGGATTTCGCCCGTCGGAGCTGCTAAATATTGTGTTGCCACAGCTTCAGCCATTGACTGATCAACAACGTCTGGACTTCTGTAACCTGCGGCAATCGTCACAGCAAGCGGAGGATGCGCTATCACAGGGAATGGACAAACTGCAGCAGGCTCTGGCATTGAGCATAGCAGCTGATCAAATGAGTGGAGAAAGTTTTGGGTGTCAGATGGCTTCTGCACTTGAGAAGCTTGAAGCACTAGAGAGCTTCTTGAGCCAGGCAGATCACCTTCGGCAGCAAACGCTGCAGCAAATGTCTCGAATCCTCACGACACACCAAGCAGCGCAAGGCTTGCTTGCACTGGGGGAGTACTTTCACCGGTTACGTGCCCTCAGTTCTCTATGGACTGCTCGTCCCCGCAAACCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

351

Amino Acids

39.74

Weight (kDa)

7.22

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	64 - 95	7.4e-08	bZIP transcription factor
DOG1	PF14144	152 - 227	3.3e-26	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77930 AT1G77930 AT1G77930
fragaria_vesca	FvH4_5g38391 FvH4_5g38391
malus_domestica	MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica	Prupe.1G508000_v2.0.a1
pyrus_communis	pycom15g32240
rosa_chinensis	RchiOBHm_Chr7g0240411
rosa_laevigata	RLG00000000679
rosa_roxburghii	Rroxscaffold_3G00220140
rosa_rugosa	Rorug07G0335800
rosa_samantha	Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana	Rw7G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	519
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	5 cut(s)	22, 286, 733, 752, 1039
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	2 cut(s)	34, 674
AfaI	GTAC	2 cut(s)	364, 992
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgeI	ACCGGT	1 cut(s)	999
AgsI	TTSAA	5 cut(s)	269, 394, 440, 532, 875
AhdI	GACNNNNNGTC	1 cut(s)	1032
AjnI	CCWGG	1 cut(s)	897
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	199, 942
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	2 cut(s)	569, 796
Aor13HI	TCCGGA	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	394
AsiGI	ACCGGT	1 cut(s)	999
AspLEI	GCGC	2 cut(s)	763, 967
AsuHPI	GGTGA	3 cut(s)	68, 899, 989
AsuII	TTCGAA	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	1012
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	468
BccI	CCATC	2 cut(s)	412, 844
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BciT130I	CCWGG	1 cut(s)	899
BciVI	GTATCC	1 cut(s)	371
BclI	TGATCA	4 cut(s)	58, 169, 703, 817
BcoDI	GTCTC	2 cut(s)	199, 942
BfaI	CTAG	4 cut(s)	92, 327, 366, 881
BfmI	CTRYAG	2 cut(s)	785, 926
BfuAI	ACCTGC	1 cut(s)	738
BfuI	GTATCC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	185
BmcAI	AGTACT	1 cut(s)	992
Bme1390I	CCNGG	1 cut(s)	899
BmeRI	GACNNNNNGTC	1 cut(s)	1032
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	899
BmrI	ACTGGG	2 cut(s)	442, 992
BmsI	GCATC	2 cut(s)	556, 748
BmuI	ACTGGG	2 cut(s)	442, 992
BpmI	CTGGAG	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	508
BpuEI	CTTGAG	2 cut(s)	884, 913
BsaAI	YACGTR	1 cut(s)	1007
BsaWI	WCCGGW	2 cut(s)	155, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse118I	RCCGGY	1 cut(s)	999
Bse1I	ACTGG	2 cut(s)	437, 987
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	899
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	481, 1027
BseNI	ACTGG	2 cut(s)	437, 987
BseSI	GKGCMC	1 cut(s)	1012
BsgI	GTGCAG	3 cut(s)	216, 221, 843
BshNI	GGYRCC	1 cut(s)	338
BshTI	ACCGGT	1 cut(s)	999
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	156, 1000
BslFI	GGGAC	1 cut(s)	1020
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	199, 942
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	1020
Bsp119I	TTCGAA	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	468, 1012
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
BspACI	CCGC	5 cut(s)	22, 286, 733, 752, 1039
BspCNI	CTCAG	2 cut(s)	480, 1026
BspEI	TCCGGA	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	2 cut(s)	789, 930
BspMI	ACCTGC	1 cut(s)	738
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	999
BsrI	ACTGG	2 cut(s)	437, 987
BssAI	RCCGGY	1 cut(s)	999
BssMI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	3 cut(s)	210, 524, 597
Bst6I	CTCTTC	2 cut(s)	90, 233
BstAPI	GCANNNNNTGC	3 cut(s)	569, 925, 973
BstBAI	YACGTR	1 cut(s)	1007
BstBI	TTCGAA	1 cut(s)	508
BstC8I	GCNNGC	5 cut(s)	349, 750, 792, 974, 978
BstDEI	CTNAG	2 cut(s)	467, 1013
BstF5I	GGATG	1 cut(s)	763
BstHHI	GCGC	2 cut(s)	763, 967
BstKTI	GATC	8 cut(s)	61, 172, 188, 405, 487, 706, 820, 907
BstMAI	GTCTC	2 cut(s)	199, 942
BstMBI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
BstMWI	GCNNNNNNNGC	6 cut(s)	569, 758, 894, 922, 925, 973
BstNI	CCWGG	1 cut(s)	899
BstSCI	CCNGG	1 cut(s)	897
BstSFI	CTRYAG	2 cut(s)	785, 926
BstSLI	GKGCMC	1 cut(s)	1012
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	763
BtsIMutI	CAGTG	3 cut(s)	430, 476, 980
BveI	ACCTGC	1 cut(s)	738
Cac8I	GCNNGC	5 cut(s)	349, 750, 792, 974, 978
CaiI	CAGNNNCTG	2 cut(s)	569, 796
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	2 cut(s)	763, 967
Cfr10I	RCCGGY	1 cut(s)	999
Csp6I	GTAC	2 cut(s)	363, 991
CspAI	ACCGGT	1 cut(s)	999
CviAII	CATG	2 cut(s)	137, 145
CviQI	GTAC	2 cut(s)	363, 991
DdeI	CTNAG	2 cut(s)	467, 1013
DpnI	GATC	8 cut(s)	60, 171, 187, 404, 486, 705, 819, 906
DpnII	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
DriI	GACNNNNNGTC	1 cut(s)	1032
Eam1104I	CTCTTC	2 cut(s)	90, 233
Eam1105I	GACNNNNNGTC	1 cut(s)	1032
EarI	CTCTTC	2 cut(s)	90, 233
EciI	GGCGGA	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	2 cut(s)	34, 674
EcoICRI	GAGCTC	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	897
EcoRV	GATATC	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	140, 148
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	1 cut(s)	1020
FatI	CATG	2 cut(s)	136, 144
FauI	CCCGC	1 cut(s)	1046
FauNDI	CATATG	2 cut(s)	372, 605
FbaI	TGATCA	4 cut(s)	58, 169, 703, 817
FblI	GTMKAC	1 cut(s)	519
FokI	GGATG	1 cut(s)	770
FriOI	GRGCYC	1 cut(s)	468
FspBI	CTAG	4 cut(s)	92, 327, 366, 881
GlaI	GCGC	2 cut(s)	762, 966
GsuI	CTGGAG	1 cut(s)	326
HapII	CCGG	2 cut(s)	156, 1000
HhaI	GCGC	2 cut(s)	763, 967
Hin1II	CATG	2 cut(s)	140, 148
Hin6I	GCGC	2 cut(s)	761, 965
HinP1I	GCGC	2 cut(s)	761, 965
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	3 cut(s)	101, 241, 942
HpaII	CCGG	2 cut(s)	156, 1000
HphI	GGTGA	3 cut(s)	68, 899, 989
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	5 cut(s)	53, 470, 554, 661, 849
Hpy188III	TCNNGA	9 cut(s)	92, 137, 156, 173, 224, 716, 892, 939, 949
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	4 cut(s)	58, 162, 553, 920
HpyCH4III	ACNGT	3 cut(s)	210, 524, 597
HpyCH4IV	ACGT	2 cut(s)	712, 1006
HpyF10VI	GCNNNNNNNGC	6 cut(s)	569, 758, 894, 922, 925, 973
HpyF3I	CTNAG	2 cut(s)	467, 1013
HpySE526I	ACGT	2 cut(s)	712, 1006
Hsp92II	CATG	2 cut(s)	140, 148
HspAI	GCGC	2 cut(s)	761, 965
Kpn2I	TCCGGA	1 cut(s)	155
Ksp22I	TGATCA	4 cut(s)	58, 169, 703, 817
Kzo9I	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
LmnI	GCTCC	3 cut(s)	307, 386, 661
LweI	GCATC	2 cut(s)	556, 748
MaeI	CTAG	4 cut(s)	92, 327, 366, 881
MaeII	ACGT	2 cut(s)	712, 1006
MaeIII	GTNAC	3 cut(s)	725, 741, 1002
MalI	GATC	8 cut(s)	60, 171, 187, 404, 486, 705, 819, 906
MboI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
MboII	GAAGA	3 cut(s)	107, 250, 452
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	2 cut(s)	468, 1012
MluCI	AATT	6 cut(s)	27, 87, 293, 315, 394, 456
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	6 cut(s)	47, 76, 91, 748, 956, 1022
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	1 cut(s)	290
MspA1I	CMGCKG	3 cut(s)	77, 304, 815
MspI	CCGG	2 cut(s)	156, 1000
MspR9I	CCNGG	1 cut(s)	899
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	6 cut(s)	569, 758, 894, 922, 925, 973
NdeI	CATATG	2 cut(s)	372, 605
NdeII	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
NlaIII	CATG	2 cut(s)	140, 148
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	741
NspV	TTCGAA	1 cut(s)	508
PagI	TCATGA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PfeI	GAWTC	2 cut(s)	101, 942
PinAI	ACCGGT	1 cut(s)	999
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	1007
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspN4I	GGNNCC	1 cut(s)	340
PstI	CTGCAG	2 cut(s)	789, 930
PstNI	CAGNNNCTG	2 cut(s)	569, 796
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	3 cut(s)	77, 304, 815
RsaI	GTAC	2 cut(s)	364, 992
RsaNI	GTAC	2 cut(s)	363, 991
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	290
Sau3AI	GATC	8 cut(s)	58, 169, 185, 402, 484, 703, 817, 904
ScaI	AGTACT	1 cut(s)	992
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	899
SduI	GDGCHC	2 cut(s)	468, 1012
SfaNI	GCATC	2 cut(s)	556, 748
SfcI	CTRYAG	2 cut(s)	785, 926
SfuI	TTCGAA	1 cut(s)	508
SmlI	CTYRAG	2 cut(s)	863, 892
SmoI	CTYRAG	2 cut(s)	863, 892
Sse9I	AATT	6 cut(s)	27, 87, 293, 315, 394, 456
SsiI	CCGC	5 cut(s)	22, 286, 733, 752, 1039
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	4 cut(s)	92, 327, 366, 881
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	210, 524, 597
TaiI	ACGT	2 cut(s)	715, 1009
TaqI	TCGA	5 cut(s)	111, 276, 508, 621, 940
TasI	AATT	6 cut(s)	27, 87, 293, 315, 394, 456
TatI	WGTACW	1 cut(s)	990
TauI	GCSGC	2 cut(s)	288, 736
TfiI	GAWTC	2 cut(s)	101, 942
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	3 cut(s)	437, 483, 987
TseFI	GTSAC	1 cut(s)	741
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	4 cut(s)	153, 345, 572, 623
TspGWI	ACGGA	2 cut(s)	177, 250
TspRI	CASTG	3 cut(s)	437, 483, 987
XapI	RAATTY	1 cut(s)	394
XbaI	TCTAGA	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	4 cut(s)	92, 327, 366, 881
ZrmI	AGTACT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.