MD15G1360500.v1.1

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011707
Physical Location & Seq
Reverse (-)
43410633 .. 43412917
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1360500.v1.1.491

Sequence Viewer

Length: 804 bp
ATGAGCAATTTGAGAACCATCTGTCGGCCGCACACGGTCTTCACGTCCTTCGTGTGTTGCAGACACCAAGCTCGCTTCGGCTCTAGGGTTTCATTTCGAAACCCTAATTGCAGTCCTCGCTTTCCGCGGGTGTCCGATTTTGCGAGATTGAATTGGGGCGGGTGGTCCCGGGTCAATCAGAGAAGGATGGTGGTTAGGGCTTCCAGTTGGGACCATCCCAAATCTCCCTACGAAACTCTTGAATTAGAGAGGAACGCTGACGATGACCAGATAAAGATTGCTTACAGACGGTTGGCCAAGTTCTATCATCCAGATGTCTATGATGGTAGAGGGACTCTAGAGGAGGGGGAAACAGCTGAAGCTAGATTTATTAAGATTCAAGCTGCTTATGAGTTGCTCATGGATGACGAGAAGAGGGGACAATATGATAGGGATAACCGACTCAACCCAATGAAAGCATCTCAAGCATGGATGGAGTGGCTAATAAAGAAGCGAAAAGCTTTTGATCAGCGAGGTGATATGGCAATAGCTGCTTGGCAAGAGCAACAGCAGCGTGAGATGAATATTCGTGCACGTCGACTTTCTCGTTCCAAGGTTGACCCAGATGAAGAGAAGAGAATCCTGGCAAGAGAAAAAAAGGCCTCAGCAGAGTATTTCTCCAGTACCCTCAAGCGACACACACTAGTCTTAAAGAAAAGGGACCTAATGCGAAAGAAAGCAGAGGAAGACAAGAAAAAGCTCATCGGTCAGCTTTTAGCCGCAGAGGGACTTGAGCTCGACACACAGGACGAAGAAAAACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

268

Amino Acids

31.63

Weight (kDa)

9.75

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 76 - 143 4.9e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011707)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77930 AT1G77930 AT1G77930
fragaria_vesca FvH4_5g38391 FvH4_5g38391
malus_domestica MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica Prupe.1G508000_v2.0.a1
pyrus_communis pycom15g32240
rosa_chinensis RchiOBHm_Chr7g0240411
rosa_laevigata RLG00000000679
rosa_roxburghii Rroxscaffold_3G00220140
rosa_rugosa Rorug07G0335800
rosa_samantha Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana Rw7G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 577
AccII CGCG 1 cut(s) 127
AciI CCGC 5 cut(s) 29, 125, 127, 159, 759
AcoI YGGCCR 2 cut(s) 26, 294
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 3 cut(s) 151, 242, 380
AhlI ACTAGT 1 cut(s) 682
AjiI CACGTC 2 cut(s) 45, 575
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 9 cut(s) 71, 356, 362, 383, 500, 530, 739, 751, 775
AluI AGCT 9 cut(s) 71, 356, 362, 383, 500, 530, 739, 751, 775
Alw21I GWGCWC 2 cut(s) 574, 777
Alw44I GTGCAC 1 cut(s) 570
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 3 cut(s) 26, 294, 639
ApaLI GTGCAC 1 cut(s) 570
ApeKI GCWGC 3 cut(s) 383, 530, 550
AspS9I GGNCC 3 cut(s) 165, 211, 700
AsuC2I CCSGG 2 cut(s) 169, 170
AsuHPI GGTGA 1 cut(s) 527
AsuII TTCGAA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 3 cut(s) 165, 211, 700
BaeGI GKGCMC 1 cut(s) 574
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 777
BbsI GAAGAC 2 cut(s) 31, 732
Bbv12I GWGCWC 2 cut(s) 574, 777
BbvCI CCTCAGC 1 cut(s) 643
BbvI GCAGC 3 cut(s) 370, 517, 562
BccI CCATC 5 cut(s) 26, 181, 222, 317, 466
BciT130I CCWGG 1 cut(s) 623
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 2 cut(s) 169, 170
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 4 cut(s) 84, 338, 363, 683
BisI GCNGC 5 cut(s) 29, 384, 531, 551, 759
BlsI GCNGC 5 cut(s) 30, 385, 532, 552, 760
Bme1390I CCNGG 3 cut(s) 169, 170, 623
Bme18I GGWCC 3 cut(s) 165, 211, 700
BmeT110I CYCGRG 1 cut(s) 168
BmgBI CACGTC 2 cut(s) 45, 575
BmgT120I GGNCC 3 cut(s) 165, 211, 700
BmiI GGNNCC 3 cut(s) 167, 212, 701
BmrFI CCNGG 3 cut(s) 169, 170, 623
BmsI GCATC 1 cut(s) 467
BpiI GAAGAC 2 cut(s) 31, 732
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 1 cut(s) 643
Bpu10I CCTNAGC 1 cut(s) 643
Bpu14I TTCGAA 1 cut(s) 97
BpuEI CTTGAG 3 cut(s) 447, 653, 791
BpuMI CCSGG 2 cut(s) 169, 170
BsaJI CCNNGG 3 cut(s) 125, 168, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 204, 660
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 125, 168, 591
BseGI GGATG 5 cut(s) 192, 214, 307, 409, 477
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 2 cut(s) 204, 660
BseRI GAGGAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 574
BseX3I CGGCCG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 370, 517, 562
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 3 cut(s) 28, 296, 641
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 574, 777
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 6 cut(s) 151, 224, 346, 432, 713, 780
BslI CCNNNNNNNGG 1 cut(s) 24
BsmFI GGGAC 6 cut(s) 151, 224, 346, 432, 713, 780
BsnI GGCC 3 cut(s) 28, 296, 641
BsoBI CYCGRG 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 574, 777
Bsp143I GATC 1 cut(s) 505
BspACI CCGC 5 cut(s) 29, 125, 127, 159, 759
BspANI GGCC 3 cut(s) 28, 296, 641
BspCNI CTCAG 1 cut(s) 656
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 167, 212, 701
BspT104I TTCGAA 1 cut(s) 97
BsrI ACTGG 2 cut(s) 204, 660
BssECI CCNNGG 3 cut(s) 125, 168, 591
BssMI GATC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 37, 291, 801
Bst6I CTCTTC 3 cut(s) 407, 603, 608
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 643
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 5 cut(s) 192, 214, 307, 409, 477
BstFNI CGCG 1 cut(s) 127
BstKTI GATC 1 cut(s) 508
BstMBI GATC 1 cut(s) 505
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 4 cut(s) 117, 464, 530, 550
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 3 cut(s) 167, 168, 621
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 3 cut(s) 370, 517, 562
BstV2I GAAGAC 2 cut(s) 31, 732
BstZI CGGCCG 1 cut(s) 26
BsuRI GGCC 3 cut(s) 28, 296, 641
BtgI CCRYGG 1 cut(s) 125
BtrI CACGTC 2 cut(s) 45, 575
BtsCI GGATG 5 cut(s) 192, 214, 307, 409, 477
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 165, 211, 700
Cfr42I CCGCGG 1 cut(s) 128
Cfr9I CCCGGG 1 cut(s) 168
Csp6I GTAC 1 cut(s) 663
CviAII CATG 2 cut(s) 400, 468
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 1 cut(s) 643
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
EaeI YGGCCR 2 cut(s) 26, 294
EagI CGGCCG 1 cut(s) 26
Eam1104I CTCTTC 3 cut(s) 407, 603, 608
EarI CTCTTC 3 cut(s) 407, 603, 608
Ecl136II GAGCTC 1 cut(s) 775
EclXI CGGCCG 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 591
Eco147I AGGCCT 1 cut(s) 641
Eco24I GRGCYC 1 cut(s) 777
Eco47I GGWCC 3 cut(s) 165, 211, 700
Eco52I CGGCCG 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 775
EcoO109I RGGNCCY 1 cut(s) 700
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 2 cut(s) 403, 471
FaiI YATR 6 cut(s) 321, 390, 401, 426, 469, 521
FaqI GGGAC 6 cut(s) 151, 224, 346, 432, 713, 780
FatI CATG 2 cut(s) 399, 467
FauI CCCGC 2 cut(s) 120, 152
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 577
Fnu4HI GCNGC 5 cut(s) 29, 384, 531, 551, 759
FokI GGATG 5 cut(s) 199, 201, 294, 416, 484
FriOI GRGCYC 1 cut(s) 777
Fsp4HI GCNGC 5 cut(s) 29, 384, 531, 551, 759
FspBI CTAG 4 cut(s) 84, 338, 363, 683
GluI GCNGC 5 cut(s) 29, 384, 531, 551, 759
GsuI CTGGAG 1 cut(s) 643
HaeIII GGCC 3 cut(s) 28, 296, 641
HapII CCGG 1 cut(s) 169
Hin1II CATG 2 cut(s) 403, 471
HincII GTYRAC 2 cut(s) 578, 598
HindII GTYRAC 2 cut(s) 578, 598
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 4 cut(s) 334, 376, 441, 618
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 3 cut(s) 572, 578, 598
Hpy188I TCNGA 2 cut(s) 136, 180
Hpy188III TCNNGA 3 cut(s) 239, 311, 338
Hpy8I GTNNAC 3 cut(s) 572, 578, 598
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 2 cut(s) 58, 177
HpyCH4III ACNGT 3 cut(s) 37, 291, 801
HpyCH4IV ACGT 2 cut(s) 44, 574
HpyCH4V TGCA 3 cut(s) 60, 111, 572
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 464, 530, 550
HpyF3I CTNAG 1 cut(s) 643
HpySE526I ACGT 2 cut(s) 44, 574
Hsp92II CATG 2 cut(s) 403, 471
Ksp22I TGATCA 1 cut(s) 505
KspI CCGCGG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 505
LpnPI CCDG 9 cut(s) 182, 217, 281, 324, 608, 615, 635, 673, 770
Lsp1109I GCAGC 3 cut(s) 370, 517, 562
LweI GCATC 1 cut(s) 467
MaeI CTAG 4 cut(s) 84, 338, 363, 683
MaeII ACGT 2 cut(s) 44, 574
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 6 cut(s) 31, 424, 620, 625, 737, 803
MhlI GDGCHC 2 cut(s) 574, 777
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 4 cut(s) 7, 106, 151, 242
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 2 cut(s) 328, 435
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 372, 689
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 127, 356
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 169, 170, 623
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 4 cut(s) 117, 464, 530, 550
NciI CCSGG 2 cut(s) 169, 170
NdeII GATC 1 cut(s) 505
NlaIII CATG 2 cut(s) 403, 471
NlaIV GGNNCC 3 cut(s) 167, 212, 701
NspV TTCGAA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 641
PcsI WCGNNNNNNNCGW 3 cut(s) 41, 574, 583
PfeI GAWTC 2 cut(s) 376, 618
PkrI GCNGC 5 cut(s) 30, 385, 532, 552, 760
PleI GAGTC 2 cut(s) 328, 435
PpsI GAGTC 2 cut(s) 328, 435
PpuMI RGGWCCY 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 3 cut(s) 167, 212, 701
PspPI GGNCC 3 cut(s) 165, 211, 700
PspPPI RGGWCCY 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 777
SacII CCGCGG 1 cut(s) 128
SalI GTCGAC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 372, 689
SatI GCNGC 5 cut(s) 29, 384, 531, 551, 759
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 3 cut(s) 165, 211, 700
SchI GAGTC 2 cut(s) 328, 435
ScrFI CCNGG 3 cut(s) 169, 170, 623
SduI GDGCHC 2 cut(s) 574, 777
SfaNI GCATC 1 cut(s) 467
Sfr303I CCGCGG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 128
SinI GGWCC 3 cut(s) 165, 211, 700
SmaI CCCGGG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 3 cut(s) 462, 668, 770
SmoI CTYRAG 3 cut(s) 462, 668, 770
SpeI ACTAGT 1 cut(s) 682
Sse9I AATT 4 cut(s) 7, 106, 151, 242
SseBI AGGCCT 1 cut(s) 641
SsiI CCGC 5 cut(s) 29, 125, 127, 159, 759
SspI AATATT 1 cut(s) 565
SspMI CTAG 4 cut(s) 84, 338, 363, 683
SstI GAGCTC 1 cut(s) 777
StuI AGGCCT 1 cut(s) 641
StyD4I CCNGG 3 cut(s) 167, 168, 621
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 3 cut(s) 37, 291, 801
TaiI ACGT 2 cut(s) 47, 577
TaqI TCGA 3 cut(s) 97, 577, 777
TaqII GACCGA 1 cut(s) 734
TasI AATT 4 cut(s) 7, 106, 151, 242
TauI GCSGC 2 cut(s) 31, 761
TfiI GAWTC 2 cut(s) 376, 618
Tru1I TTAA 2 cut(s) 372, 689
Tru9I TTAA 2 cut(s) 372, 689
TseI GCWGC 3 cut(s) 383, 530, 550
TspDTI ATGAA 4 cut(s) 81, 467, 575, 621
TspMI CCCGGG 1 cut(s) 168
VneI GTGCAC 1 cut(s) 570
VpaK11BI GGWCC 3 cut(s) 165, 211, 700
XbaI TCTAGA 1 cut(s) 337
XmaI CCCGGG 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 577
XspI CTAG 4 cut(s) 84, 338, 363, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.