Rh7AG490000

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011707
Physical Location & Seq
Forward (+)
69031925 .. 69032422
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG490000.1

Sequence Viewer

Length: 372 bp
ATGAGTAATTTGAGAACAATCTGTAGGCCACACGCCGTCTTCACCTCCTTCATATGTTGCAGACACCAAGCTCGCTTCAGCTTTAGGGTTTCCTTTCAGCGAAACCCTAATTACTCGCCGCCTAGTCTTTCACCGGCGTCGTCCGATTTCGCGAGATTGAACCGGAGCGAGTCGTGGTTCCGAGCGAACCAGAGAAGATCCATTGTTAGGGCGTCGAATTGGACCCACCCCAGGTCTCCCTACGAAACTCTTGAATTAAAGTTGGATGCTGATGATGAACAGATAAAGGTTGCTTACAGAAGATTGGCCAAGTTTTATCATCCTGATGGTTTGTTAACTTATCTTTACTGGAATTTATTTTTGAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

123

Amino Acids

14.63

Weight (kDa)

10.17

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 80 - 109 1.8e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011707)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77930 AT1G77930 AT1G77930
fragaria_vesca FvH4_5g38391 FvH4_5g38391
malus_domestica MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica Prupe.1G508000_v2.0.a1
pyrus_communis pycom15g32240
rosa_chinensis RchiOBHm_Chr7g0240411
rosa_laevigata RLG00000000679
rosa_roxburghii Rroxscaffold_3G00220140
rosa_rugosa Rorug07G0335800
rosa_samantha Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana Rw7G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 152
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 2 cut(s) 137, 212
AfiI CCNNNNNNNGG 2 cut(s) 207, 231
AgsI TTSAA 3 cut(s) 160, 254, 364
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 71, 81
AluI AGCT 2 cut(s) 71, 81
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 192
AoxI GGCC 2 cut(s) 26, 306
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 34, 123
AvaII GGWCC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 31
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 22
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 179, 224
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 31
BsaHI GRCGYC 2 cut(s) 137, 212
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 231
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 271, 319
BseLI CCNNNNNNNGG 2 cut(s) 207, 231
BseNI ACTGG 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 2 cut(s) 28, 308
BsiSI CCGG 2 cut(s) 134, 163
BslI CCNNNNNNNGG 2 cut(s) 207, 231
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 2 cut(s) 28, 308
Bso31I GGTCTC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 197
Bsp68I TCGCGA 1 cut(s) 152
BspACI CCGC 1 cut(s) 119
BspANI GGCC 2 cut(s) 28, 308
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 179, 224
BspPI GGATC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 1 cut(s) 197
BssNI GRCGYC 2 cut(s) 137, 212
Bst2UI CCWGG 1 cut(s) 232
BstACI GRCGYC 2 cut(s) 137, 212
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 2 cut(s) 271, 319
BstFNI CGCG 1 cut(s) 152
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 22
BstUI CGCG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 28, 308
BtsCI GGATG 2 cut(s) 271, 319
BtuMI TCGCGA 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 2 cut(s) 126, 201
CviJI RGCY 4 cut(s) 28, 71, 81, 308
CviKI_1 RGCY 4 cut(s) 28, 71, 81, 308
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 230
FaiI YATR 2 cut(s) 53, 55
FauNDI CATATG 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 2 cut(s) 278, 306
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 2 cut(s) 28, 308
HapII CCGG 2 cut(s) 134, 163
HgaI GACGC 2 cut(s) 126, 201
Hin1I GRCGYC 2 cut(s) 137, 212
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 1 cut(s) 170
HpaI GTTAAC 1 cut(s) 336
HpaII CCGG 2 cut(s) 134, 163
HphI GGTGA 2 cut(s) 34, 123
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 145, 182
Hpy188III TCNNGA 3 cut(s) 151, 251, 323
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 2 cut(s) 142, 217
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 60
Hsp92I GRCGYC 2 cut(s) 137, 212
KspAI GTTAAC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 7 cut(s) 147, 176, 203, 217, 244, 334, 336
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 123
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 3 cut(s) 31, 207, 312
MflI RGATCY 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 7, 109, 217, 254, 352
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 1 cut(s) 55
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 257, 335
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 2 cut(s) 134, 163
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 152
NdeI CATATG 1 cut(s) 53
NdeII GATC 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 179, 224
NruI TCGCGA 1 cut(s) 152
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 179, 224
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 197
RruI TCGCGA 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 2 cut(s) 257, 335
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 232
SetI ASST 5 cut(s) 47, 73, 83, 236, 291
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 22
SgrAI CRCCGGYG 1 cut(s) 133
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 5 cut(s) 7, 109, 217, 254, 352
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 230
TaqI TCGA 1 cut(s) 215
TasI AATT 5 cut(s) 7, 109, 217, 254, 352
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 257, 335
Tru9I TTAA 2 cut(s) 257, 335
TspDTI ATGAA 2 cut(s) 40, 291
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 352
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.