Rh7BG462900

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011707
Physical Location & Seq
Forward (+)
54853917 .. 54860241
6325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG462900.1

Sequence Viewer

Length: 819 bp
ATGAGTAATTTGAGAACAATCTGTAGGCCACACGCCGTCTTCACCTCCTTCATATGTTGCAGACACCAAGCTCGCTTCAGCTTTAGGGTTTCCTTTCAGCGAAACCCTAATTACTCGCCGCCTAGTCTTTCGCCGGCGTCGTCCGATTTCGCGAGATTGAATCGGAGCGAGACGTGGTTCCGAGCGAACCAGAGAAGATCCATTGTTAGGGCTTCGAATTGGGCCCACCCCAAGTCTCCCTACGAAACCCTTGAATTAGAGTTGGATGCTGATGATGAACAGATAAAGGTTGCTTACAGAAGATTGGCCAAGTTTTATCATCCTGATGTCTATGATGGCAGAGGGACCCTGGAGGAGGGGGAAACAGCTGAAGCTAGGTTTATCAAGATTCAAGCTGCTTATGAATTGCTTTTAGATGAAGAGAAGAGGGGCCAATATGACAGGGATAACCGAGTCAACCCATTGAAAGCATCTGAAGCATGGATGGAGTGGCTAATGAAAAAGCGAAAAGCTTTTGATCAGCGAGGTGATATGGCAATAGCGGCTTGGGCTGAGCAACAGCAGCGCGAGATGAATATCCGTGCACGTCGACTCTCTCGTTCCAAGGTTGACCCTGACGAAGAGAAGAGAATCCTGGCGAGAGAAAAGAAGGCTTCTGCAGAGTATTTCTCTAGTACGCTGAAGCGTCACACACTAGTCTTAAAGAAAAGAGACCTCATGAGAAGGAAAGCAGAGGAAGATAAGAGAAAAATCATCGGTCAGCTTTTAGCTGCAGAGGGACTTGAGCTTGATACAGATGACGAAGAAACTCGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

272

Amino Acids

32.06

Weight (kDa)

9.49

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 80 - 147 7.5e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011707)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77930 AT1G77930 AT1G77930
fragaria_vesca FvH4_5g38391 FvH4_5g38391
malus_domestica MD08G1174100.v1.1 MD15G1360500.v1.1 MD15G1360600.v1.1
prunus_persica Prupe.1G508000_v2.0.a1
pyrus_communis pycom15g32240
rosa_chinensis RchiOBHm_Chr7g0240411
rosa_laevigata RLG00000000679
rosa_roxburghii Rroxscaffold_3G00220140
rosa_rugosa Rorug07G0335800
rosa_samantha Rh7AG490000 Rh7BG462900 Rh7CG506300 Rh7DG473900
rosa_wichuraiana Rw7G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 589
AccII CGCG 2 cut(s) 152, 567
AciI CCGC 2 cut(s) 119, 542
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 306
AcuI CTGAAG 4 cut(s) 61, 390, 495, 701
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 2 cut(s) 207, 355
AgsI TTSAA 4 cut(s) 160, 254, 392, 466
AhlI ACTAGT 1 cut(s) 694
AjiI CACGTC 2 cut(s) 174, 587
AjnI CCWGG 2 cut(s) 348, 633
AluBI AGCT 9 cut(s) 71, 81, 368, 374, 395, 512, 763, 770, 787
AluI AGCT 9 cut(s) 71, 81, 368, 374, 395, 512, 763, 770, 787
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 3 cut(s) 164, 240, 705
Alw44I GTGCAC 1 cut(s) 582
AlwI GGATC 1 cut(s) 192
AoxI GGCC 4 cut(s) 26, 222, 306, 430
ApaI GGGCCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 395, 562, 770
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 4 cut(s) 222, 223, 345, 430
AsuHPI GGTGA 2 cut(s) 34, 539
AsuII TTCGAA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 345
BaeGI GKGCMC 2 cut(s) 226, 586
BalI TGGCCA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 3 cut(s) 382, 574, 757
BccI CCATC 2 cut(s) 329, 478
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 2 cut(s) 350, 635
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 3 cut(s) 164, 240, 705
BcuI ACTAGT 1 cut(s) 694
BfaI CTAG 4 cut(s) 123, 375, 672, 695
BfmI CTRYAG 3 cut(s) 22, 657, 771
BisI GCNGC 5 cut(s) 119, 396, 543, 563, 771
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 5 cut(s) 120, 397, 544, 564, 772
Bme1390I CCNGG 2 cut(s) 350, 635
Bme18I GGWCC 1 cut(s) 345
BmgBI CACGTC 2 cut(s) 174, 587
BmgT120I GGNCC 4 cut(s) 222, 223, 345, 430
BmiI GGNNCC 5 cut(s) 179, 224, 346, 347, 431
BmrFI CCNGG 2 cut(s) 350, 635
BmsI GCATC 2 cut(s) 256, 479
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpmI CTGGAG 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 803
BsaBI GATNNNNATC 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 705
BsaJI CCNNGG 2 cut(s) 348, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 355
Bse118I RCCGGY 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 575
BseBI CCWGG 2 cut(s) 350, 635
BseDI CCNNGG 2 cut(s) 348, 603
BseGI GGATG 3 cut(s) 271, 319, 489
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 2 cut(s) 207, 355
BseMII CTCAG 1 cut(s) 543
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 2 cut(s) 226, 586
BseXI GCAGC 3 cut(s) 382, 574, 757
Bsh1236I CGCG 2 cut(s) 152, 567
BshFI GGCC 4 cut(s) 28, 224, 308, 432
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 2 cut(s) 358, 792
BslI CCNNNNNNNGG 2 cut(s) 207, 355
BsmAI GTCTC 3 cut(s) 164, 240, 705
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 358, 792
BsnI GGCC 4 cut(s) 28, 224, 308, 432
Bso31I GGTCTC 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 215
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 226, 586
Bsp143I GATC 2 cut(s) 197, 517
Bsp1720I GCTNAGC 1 cut(s) 552
Bsp68I TCGCGA 1 cut(s) 152
BspACI CCGC 2 cut(s) 119, 542
BspANI GGCC 4 cut(s) 28, 224, 308, 432
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 2 cut(s) 152, 567
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 5 cut(s) 179, 224, 346, 347, 431
BspMAI CTGCAG 2 cut(s) 661, 775
BspPI GGATC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 705
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 348, 603
BssMI GATC 2 cut(s) 197, 517
BssNI GRCGYC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 350, 635
Bst6I CTCTTC 4 cut(s) 414, 419, 615, 620
BstACI GRCGYC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 73, 135
BstDEI CTNAG 1 cut(s) 552
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 271, 319, 489
BstFNI CGCG 2 cut(s) 152, 567
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 2 cut(s) 200, 520
BstMAI GTCTC 3 cut(s) 164, 240, 705
BstMBI GATC 2 cut(s) 197, 517
BstMWI GCNNNNNNNGC 4 cut(s) 476, 542, 548, 562
BstNI CCWGG 2 cut(s) 350, 635
BstSCI CCNGG 2 cut(s) 348, 633
BstSFI CTRYAG 3 cut(s) 22, 657, 771
BstSLI GKGCMC 2 cut(s) 226, 586
BstUI CGCG 2 cut(s) 152, 567
BstV1I GCAGC 3 cut(s) 382, 574, 757
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 4 cut(s) 28, 224, 308, 432
BtrI CACGTC 2 cut(s) 174, 587
BtsCI GGATG 3 cut(s) 271, 319, 489
BtuMI TCGCGA 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 73, 135
CciI TCATGA 1 cut(s) 717
CfoI GCGC 1 cut(s) 567
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 4 cut(s) 222, 223, 345, 430
CseI GACGC 2 cut(s) 126, 674
Csp6I GTAC 1 cut(s) 675
CviAII CATG 2 cut(s) 480, 718
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 1 cut(s) 552
DpnI GATC 2 cut(s) 199, 519
DpnII GATC 2 cut(s) 197, 517
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 4 cut(s) 414, 419, 615, 620
EarI CTCTTC 4 cut(s) 414, 419, 615, 620
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 705
Eco47I GGWCC 1 cut(s) 345
Eco57I CTGAAG 4 cut(s) 61, 390, 495, 701
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 348, 633
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 2 cut(s) 483, 721
FaiI YATR 8 cut(s) 53, 55, 333, 402, 438, 481, 533, 719
FaqI GGGAC 2 cut(s) 358, 792
FatI CATG 2 cut(s) 479, 717
FauNDI CATATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 5 cut(s) 119, 396, 543, 563, 771
FokI GGATG 3 cut(s) 278, 306, 496
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 5 cut(s) 119, 396, 543, 563, 771
FspBI CTAG 4 cut(s) 123, 375, 672, 695
GlaI GCGC 1 cut(s) 566
GluI GCNGC 5 cut(s) 119, 396, 543, 563, 771
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 4 cut(s) 28, 224, 308, 432
HapII CCGG 1 cut(s) 134
HgaI GACGC 2 cut(s) 126, 674
HhaI GCGC 1 cut(s) 567
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 2 cut(s) 483, 721
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 3 cut(s) 457, 590, 610
HindII GTYRAC 3 cut(s) 457, 590, 610
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 5 cut(s) 160, 388, 453, 591, 630
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 34, 539
Hpy166II GTNNAC 4 cut(s) 457, 584, 590, 610
Hpy188I TCNGA 5 cut(s) 145, 165, 182, 475, 813
Hpy188III TCNNGA 4 cut(s) 151, 323, 385, 718
Hpy8I GTNNAC 4 cut(s) 457, 584, 590, 610
Hpy99I CGWCG 2 cut(s) 142, 591
HpyAV CCTTC 3 cut(s) 58, 643, 717
HpyCH4IV ACGT 2 cut(s) 173, 586
HpyCH4V TGCA 4 cut(s) 60, 584, 659, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 476, 542, 548, 562
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 173, 586
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 2 cut(s) 483, 721
HspAI GCGC 1 cut(s) 565
KflI GGGWCCC 1 cut(s) 345
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 197, 517
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 9 cut(s) 147, 203, 335, 336, 362, 427, 620, 627, 647
Lsp1109I GCAGC 3 cut(s) 382, 574, 757
LweI GCATC 2 cut(s) 256, 479
MaeI CTAG 4 cut(s) 123, 375, 672, 695
MaeII ACGT 2 cut(s) 173, 586
MaeIII GTNAC 1 cut(s) 686
MalI GATC 2 cut(s) 199, 519
MboI GATC 2 cut(s) 197, 517
MboII GAAGA 9 cut(s) 31, 207, 312, 431, 436, 632, 637, 749, 815
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 2 cut(s) 226, 586
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 7, 109, 217, 254, 404
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 2 cut(s) 462, 585
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 9 cut(s) 55, 335, 346, 349, 420, 518, 725, 727, 769
Mox20I TGGCCA 1 cut(s) 308
MreI CGCCGGCG 1 cut(s) 133
MroNI GCCGGC 1 cut(s) 133
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 701
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 350, 635
MvaI CCWGG 2 cut(s) 350, 635
MvnI CGCG 2 cut(s) 152, 567
MwoI GCNNNNNNNGC 4 cut(s) 476, 542, 548, 562
NaeI GCCGGC 1 cut(s) 135
NdeI CATATG 1 cut(s) 53
NdeII GATC 2 cut(s) 197, 517
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 483, 721
NlaIV GGNNCC 5 cut(s) 179, 224, 346, 347, 431
NmuCI GTSAC 1 cut(s) 686
NruI TCGCGA 1 cut(s) 152
NspV TTCGAA 1 cut(s) 215
PagI TCATGA 1 cut(s) 717
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 595
PdiI GCCGGC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 160, 388, 630
PkrI GCNGC 5 cut(s) 120, 397, 544, 564, 772
PleI GAGTC 2 cut(s) 461, 585
PpsI GAGTC 2 cut(s) 461, 585
PpuMI RGGWCCY 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 348, 633
PspGI CCWGG 2 cut(s) 348, 633
PspN4I GGNNCC 5 cut(s) 179, 224, 346, 347, 431
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 4 cut(s) 222, 223, 345, 430
PspPPI RGGWCCY 1 cut(s) 345
PstI CTGCAG 2 cut(s) 661, 775
PsuI RGATCY 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 368
RruI TCGCGA 1 cut(s) 152
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 1 cut(s) 324
SalI GTCGAC 1 cut(s) 588
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 5 cut(s) 119, 396, 543, 563, 771
Sau3AI GATC 2 cut(s) 197, 517
Sau96I GGNCC 4 cut(s) 222, 223, 345, 430
SchI GAGTC 2 cut(s) 462, 585
ScrFI CCNGG 2 cut(s) 350, 635
SduI GDGCHC 2 cut(s) 226, 586
SfaNI GCATC 2 cut(s) 256, 479
SfcI CTRYAG 3 cut(s) 22, 657, 771
SfuI TTCGAA 1 cut(s) 215
SgrAI CRCCGGYG 1 cut(s) 133
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SpeI ACTAGT 1 cut(s) 694
Sse9I AATT 5 cut(s) 7, 109, 217, 254, 404
SsiI CCGC 2 cut(s) 119, 542
SspMI CTAG 4 cut(s) 123, 375, 672, 695
StyD4I CCNGG 2 cut(s) 348, 633
StyI CCWWGG 1 cut(s) 603
TaiI ACGT 2 cut(s) 176, 589
TaqI TCGA 2 cut(s) 215, 589
TaqII GACCGA 1 cut(s) 746
TasI AATT 5 cut(s) 7, 109, 217, 254, 404
TauI GCSGC 2 cut(s) 121, 545
TfiI GAWTC 3 cut(s) 160, 388, 630
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 3 cut(s) 395, 562, 770
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 6 cut(s) 40, 291, 417, 432, 512, 587
TspGWI ACGGA 1 cut(s) 569
VneI GTGCAC 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 589
XspI CTAG 4 cut(s) 123, 375, 672, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.