AT1G78600

zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015020
Physical Location & Seq
Forward (+)
29566863 .. 29568931
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78600.2

Sequence Viewer

Length: 900 bp
ATGAAGATTCAGTGTAACGTTTGTGAGGCGGCGGAAGCGACGGTTCTATGTTGCGCCGACGAGGCTGCTCTTTGTTGGGCTTGCGATGAGAAAATTCACGCCGCTAATAAACTCGCCGGAAAACATCAGAGAGTCCCTCTCTCTGCCTCTGCCTCTTCCATACCCAAATGTGACATTTGTCAGGAAGCATCTGGATTCTTCTTTTGTCTGCAAGATAGAGCTTTGCTATGTAGGAAATGTGATGTTGCAATCCACACTGTGAATCCTCATGTTTCAGCTCACCAGAGATTTCTTCTCACTGGAATCAAAGTTGGTCTTGAATCTATAGACACTGGTCCTTCTACTAAATCCTCACCTACCAATGATGATAAAACCATGGAGACCAAACCTTTTGTTCAATCTATACCTGAGCCTCAAAAGATGGCCTTCGATCATCATCATCACCAGCAGCAGCAGGAACAGCAGGAAGGAGTTATACCGGGAACTAAAGTCAATGATCAGACATCGACAAAGCTTCCTCTCGTAAGTAGCGGATCAACTACTGGAAGCATTCCTCAGTGGCAAATAGAGGAGATTTTCGGGCTAACCGACTTTGATCAGAGCTATGAATACATGGAGAATAATGGATCATCTAAGGCGGATACTAGTAGACGAGGAGATTCAGACAGTTCTTCGATGATGAGATCTGCAGAAGAAGATGGAGAAGATAACAATAACTGCTTGGGAGGTGAGACATCATGGGCGGTTCCACAGATTCAGTCTCCACCTACAGCGTCTGGTCTAAACTGGCCTAAGCATTTTCACCACCACTCTGTGTTTGTTCCGGACATAACTTCTTCAACTCCTTATACCGGTTCATCCCCGAATCAAAGGGTTGGGAAACGGCGGCGACGGTTCTAG

Protein Analysis

299

Amino Acids

32.86

Weight (kDa)

5.89

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 55 - 94 9.4e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78600 AT1G78600
fragaria_vesca FvH4_6g37790
malus_domestica MD09G1155900.v1.1
prunus_persica Prupe.8G109100_v2.0.a1
pyrus_communis pycom09g07470
rosa_chinensis RchiOBHm_Chr2g0150861
rosa_laevigata RLG00000020514
rosa_multiflora Rmu_sc0000185.1_g000012 Rmu_sc0007617.1_g000006
rosa_rugosa Rorug02G0423000
rosa_samantha Rh2AG483300 Rh2BG495700 Rh2CG469600 Rh2DG506600
rosa_wichuraiana Rw2G039610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 649
AccIII TCCGGA 1 cut(s) 823
AciI CCGC 7 cut(s) 29, 32, 102, 531, 638, 743, 886
AclI AACGTT 1 cut(s) 18
AclWI GGATC 2 cut(s) 541, 634
AcsI RAATTY 1 cut(s) 93
AdeI CACNNNGTG 2 cut(s) 259, 814
AfiI CCNNNNNNNGG 1 cut(s) 851
AgeI ACCGGT 1 cut(s) 851
AgsI TTSAA 3 cut(s) 320, 398, 840
AhlI ACTAGT 1 cut(s) 644
AluBI AGCT 4 cut(s) 221, 278, 514, 603
AluI AGCT 4 cut(s) 221, 278, 514, 603
Alw26I GTCTC 3 cut(s) 374, 725, 765
AlwI GGATC 2 cut(s) 541, 634
AlwNI CAGNNNCTG 1 cut(s) 776
Aor13HI TCCGGA 1 cut(s) 823
AoxI GGCC 2 cut(s) 423, 788
ApeKI GCWGC 3 cut(s) 65, 448, 451
ApoI RAATTY 1 cut(s) 93
AsiGI ACCGGT 1 cut(s) 851
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 5 cut(s) 272, 345, 434, 740, 794
AvaII GGWCC 1 cut(s) 335
BarI GAAGNNNNNNTAC 2 cut(s) 459, 491
BbvI GCAGC 3 cut(s) 52, 460, 463
BccI CCATC 2 cut(s) 415, 692
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 2 cut(s) 496, 595
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 374, 725, 765
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 2 cut(s) 645, 898
BfmI CTRYAG 3 cut(s) 324, 687, 768
BfuI GTATCC 1 cut(s) 634
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 683
BisI GCNGC 6 cut(s) 30, 66, 102, 449, 452, 887
BlsI GCNGC 6 cut(s) 31, 67, 103, 450, 453, 888
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 1 cut(s) 197
BoxI GACNNNNGTC 2 cut(s) 177, 333
BplI GAGNNNNNCTC 4 cut(s) 121, 153, 123, 155
Bpu10I CCTNAGC 2 cut(s) 408, 792
BpuMI CCSGG 1 cut(s) 480
BsaBI GATNNNNATC 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 375
BsaWI WCCGGW 2 cut(s) 823, 851
Bsc4I CCNNNNNNNGG 1 cut(s) 851
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 4 cut(s) 304, 337, 547, 791
Bse8I GATNNNNATC 1 cut(s) 435
BseAI TCCGGA 1 cut(s) 823
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 857
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 851
BseMII CTCAG 2 cut(s) 399, 569
BseNI ACTGG 4 cut(s) 304, 337, 547, 791
BseRI GAGGAG 2 cut(s) 584, 669
BseXI GCAGC 3 cut(s) 52, 460, 463
BshFI GGCC 2 cut(s) 425, 790
BshTI ACCGGT 1 cut(s) 851
BsiSI CCGG 4 cut(s) 117, 479, 824, 852
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 851
BsmAI GTCTC 3 cut(s) 374, 725, 765
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 2 cut(s) 425, 790
Bso31I GGTCTC 1 cut(s) 374
Bsp13I TCCGGA 1 cut(s) 823
Bsp143I GATC 6 cut(s) 430, 496, 533, 595, 626, 683
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 7 cut(s) 29, 32, 102, 531, 638, 743, 886
BspANI GGCC 2 cut(s) 425, 790
BspCNI CTCAG 2 cut(s) 400, 568
BspEI TCCGGA 1 cut(s) 823
BspLI GGNNCC 1 cut(s) 747
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 2 cut(s) 541, 634
BspTNI GGTCTC 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 4 cut(s) 304, 337, 547, 791
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 6 cut(s) 430, 496, 533, 595, 626, 683
BssT1I CCWWGG 1 cut(s) 375
Bst4CI ACNGT 4 cut(s) 43, 259, 668, 894
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 408, 555, 633, 792
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 857
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 6 cut(s) 433, 499, 536, 598, 629, 686
BstMAI GTCTC 3 cut(s) 374, 725, 765
BstMBI GATC 6 cut(s) 430, 496, 533, 595, 626, 683
BstMWI GCNNNNNNNGC 3 cut(s) 35, 62, 460
BstPAI GACNNNNGTC 2 cut(s) 177, 333
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 3 cut(s) 324, 687, 768
BstV1I GCAGC 3 cut(s) 52, 460, 463
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 2 cut(s) 425, 790
BtgI CCRYGG 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 857
BtsIMutI CAGTG 5 cut(s) 17, 255, 297, 330, 563
Cac8I GCNNGC 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 762
CspAI ACCGGT 1 cut(s) 851
CviAII CATG 4 cut(s) 269, 376, 613, 738
DdeI CTNAG 4 cut(s) 408, 555, 633, 792
DpnI GATC 6 cut(s) 432, 498, 535, 597, 628, 685
DpnII GATC 6 cut(s) 430, 496, 533, 595, 626, 683
DraIII CACNNNGTG 2 cut(s) 259, 814
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 2 cut(s) 47, 653
Eco130I CCWWGG 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 4 cut(s) 272, 379, 616, 741
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 410, 442
FaqI GGGAC 1 cut(s) 119
FatI CATG 4 cut(s) 268, 375, 612, 737
FbaI TGATCA 2 cut(s) 496, 595
FblI GTMKAC 1 cut(s) 649
Fnu4HI GCNGC 6 cut(s) 30, 66, 102, 449, 452, 887
FokI GGATG 1 cut(s) 844
Fsp4HI GCNGC 6 cut(s) 30, 66, 102, 449, 452, 887
FspBI CTAG 2 cut(s) 645, 898
GlaI GCGC 1 cut(s) 55
GluI GCNGC 6 cut(s) 30, 66, 102, 449, 452, 887
HaeIII GGCC 2 cut(s) 425, 790
HapII CCGG 4 cut(s) 117, 479, 824, 852
HgaI GACGC 1 cut(s) 762
HhaI GCGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 272, 379, 616, 741
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 9 cut(s) 7, 132, 195, 262, 303, 320, 659, 754, 865
HpaII CCGG 4 cut(s) 117, 479, 824, 852
HphI GGTGA 5 cut(s) 272, 345, 434, 740, 794
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 4 cut(s) 129, 501, 600, 664
Hpy188III TCNNGA 4 cut(s) 182, 192, 317, 824
Hpy8I GTNNAC 1 cut(s) 650
Hpy99I CGWCG 3 cut(s) 43, 62, 894
HpyAV CCTTC 3 cut(s) 348, 436, 461
HpyCH4III ACNGT 4 cut(s) 43, 259, 668, 894
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 3 cut(s) 211, 248, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 62, 460
HpyF3I CTNAG 4 cut(s) 408, 555, 633, 792
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 4 cut(s) 272, 379, 616, 741
HspAI GCGC 1 cut(s) 54
Kpn2I TCCGGA 1 cut(s) 823
Ksp22I TGATCA 2 cut(s) 496, 595
Kzo9I GATC 6 cut(s) 430, 496, 533, 595, 626, 683
Lsp1109I GCAGC 3 cut(s) 52, 460, 463
LweI GCATC 1 cut(s) 197
MaeI CTAG 2 cut(s) 645, 898
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 14, 170
MalI GATC 6 cut(s) 432, 498, 535, 597, 628, 685
MboI GATC 6 cut(s) 430, 496, 533, 595, 626, 683
MboII GAAGA 9 cut(s) 16, 147, 190, 284, 663, 704, 707, 716, 828
MflI RGATCY 1 cut(s) 683
MluCI AATT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 141
MroI TCCGGA 1 cut(s) 823
MspI CCGG 4 cut(s) 117, 479, 824, 852
MspR9I CCNGG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 35, 62, 460
NciI CCSGG 1 cut(s) 480
NcoI CCATGG 1 cut(s) 375
NdeII GATC 6 cut(s) 430, 496, 533, 595, 626, 683
NlaIII CATG 4 cut(s) 272, 379, 616, 741
NlaIV GGNNCC 1 cut(s) 747
NmuCI GTSAC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PctI GAATGC 1 cut(s) 549
PfeI GAWTC 8 cut(s) 7, 195, 262, 303, 320, 659, 754, 865
PinAI ACCGGT 1 cut(s) 851
PkrI GCNGC 6 cut(s) 31, 67, 103, 450, 453, 888
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PshAI GACNNNNGTC 2 cut(s) 177, 333
Psp1406I AACGTT 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 683
SatI GCNGC 6 cut(s) 30, 66, 102, 449, 452, 887
Sau3AI GATC 6 cut(s) 430, 496, 533, 595, 626, 683
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 480
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 3 cut(s) 324, 687, 768
SinI GGWCC 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 1 cut(s) 93
SsiI CCGC 7 cut(s) 29, 32, 102, 531, 638, 743, 886
SspMI CTAG 2 cut(s) 645, 898
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 4 cut(s) 43, 259, 668, 894
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 429, 506, 674
TasI AATT 1 cut(s) 93
TauI GCSGC 3 cut(s) 32, 104, 889
TfiI GAWTC 8 cut(s) 7, 195, 262, 303, 320, 659, 754, 865
TscAI CASTG 5 cut(s) 17, 262, 304, 337, 563
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 3 cut(s) 65, 448, 451
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 17, 621, 846
TspRI CASTG 5 cut(s) 17, 262, 304, 337, 563
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 649
XspI CTAG 2 cut(s) 645, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.