Rh2CG469600

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015020
Physical Location & Seq
Reverse (-)
63379896 .. 63381856
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG469600.1

Sequence Viewer

Length: 489 bp
ATGCCCAAGTGCGACATCTGCCAGGAGACTGTTGGTTACTTCTTCTGTCTAGAGGACCGAGCTTTACTCTGTAGGAAATGCGACGTTGCCATACACACAGCAAACTCCTACGTGTCTAGTCACCAAAGGTTTTTGCTTACTGGAGTGGAAGTGGGGCTTGAAGCAACTGAACCATGTATCTCCCCCTCTACAAAGGAAAAGTTGACTTCTGTGGAAACAGTTTCTGAATCAGCATCATCTCCATCAATCCCCAGAAGTGTCATAGATCATTTTAGTACTGGTGAGATAAAAGACACAATTCCTATGCAAATTGGTAGCATTGGGACTCTTGAATCAGACAAGATACCGTTAAACCGAAGTACCACTACCTCTGTGGGTACTATTTCGGGGTGGCTCTTGGAAGAATGTCTTGGATTAACTTATCCTAATCAGAATAACGGATGCTTGGACACTATGCCATCAAAGGTTTATGGAAGCTACTACGCGTGA

Protein Analysis

162

Amino Acids

17.63

Weight (kDa)

4.88

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 2 - 42 3.8e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78600 AT1G78600
fragaria_vesca FvH4_6g37790
malus_domestica MD09G1155900.v1.1
prunus_persica Prupe.8G109100_v2.0.a1
pyrus_communis pycom09g07470
rosa_chinensis RchiOBHm_Chr2g0150861
rosa_laevigata RLG00000020514
rosa_multiflora Rmu_sc0000185.1_g000012 Rmu_sc0007617.1_g000006
rosa_rugosa Rorug02G0423000
rosa_samantha Rh2AG483300 Rh2BG495700 Rh2CG469600 Rh2DG506600
rosa_wichuraiana Rw2G039610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 485
AfaI GTAC 3 cut(s) 277, 361, 379
AflIII ACRYGT 2 cut(s) 111, 483
AgsI TTSAA 2 cut(s) 161, 332
AjnI CCWGG 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 62, 477
AluI AGCT 2 cut(s) 62, 477
Alw26I GTCTC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 113, 293
AvaII GGWCC 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
BccI CCATC 2 cut(s) 250, 466
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 50, 117
BfmI CTRYAG 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 242, 431
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpmI CTGGAG 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bse1I ACTGG 2 cut(s) 145, 283
BseBI CCWGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 145, 283
Bsh1236I CGCG 1 cut(s) 485
BslFI GGGAC 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 265
BspFNI CGCG 1 cut(s) 485
BsrI ACTGG 2 cut(s) 145, 283
BssMI GATC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 31, 220, 348
BstBAI YACGTR 1 cut(s) 112
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 485
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 1 cut(s) 485
BtsCI GGATG 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 3 cut(s) 276, 360, 378
CviAII CATG 1 cut(s) 174
CviJI RGCY 4 cut(s) 62, 157, 394, 477
CviKI_1 RGCY 4 cut(s) 62, 157, 394, 477
CviQI GTAC 3 cut(s) 276, 360, 378
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 177
FaiI YATR 6 cut(s) 92, 175, 263, 305, 455, 471
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 393, 425
FaqI GGGAC 1 cut(s) 337
FatI CATG 1 cut(s) 173
FokI GGATG 1 cut(s) 453
FspBI CTAG 2 cut(s) 50, 117
GsuI CTGGAG 1 cut(s) 162
Hin1II CATG 1 cut(s) 177
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 3 cut(s) 227, 325, 332
HphI GGTGA 2 cut(s) 113, 293
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 3 cut(s) 226, 337, 432
Hpy188III TCNNGA 2 cut(s) 50, 329
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 3 cut(s) 31, 220, 348
HpyCH4IV ACGT 2 cut(s) 84, 111
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 84, 111
Hsp92II CATG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 8, 35, 126, 264, 265
LweI GCATC 2 cut(s) 242, 431
MaeI CTAG 2 cut(s) 50, 117
MaeII ACGT 2 cut(s) 84, 111
MaeIII GTNAC 2 cut(s) 35, 119
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 2 cut(s) 34, 413
MluCI AATT 2 cut(s) 297, 309
MluI ACGCGT 1 cut(s) 483
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 3 cut(s) 46, 196, 379
MseI TTAA 2 cut(s) 350, 416
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 227, 332
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 277, 361, 379
RsaNI GTAC 3 cut(s) 276, 360, 378
SaqAI TTAA 2 cut(s) 350, 416
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 23
SetI ASST 7 cut(s) 64, 87, 114, 131, 371, 468, 479
SfaNI GCATC 2 cut(s) 242, 431
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 297, 309
SspMI CTAG 2 cut(s) 50, 117
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 31, 220, 348
TaiI ACGT 2 cut(s) 87, 114
TaqII GACCGA 1 cut(s) 72
TasI AATT 2 cut(s) 297, 309
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 2 cut(s) 227, 332
Tru1I TTAA 2 cut(s) 350, 416
Tru9I TTAA 2 cut(s) 350, 416
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 2 cut(s) 29, 370
XspI CTAG 2 cut(s) 50, 117
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.