Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000185.1

Orthogroup ID

OG0015020

Physical Location & Seq

Genomic Coordinates Reverse (-)

39482 .. 43138

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000185.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgatttgtaatcatcagtcaaatgatgctcagctgcccagtcctccaaggcctttctgccaggaacaaccacagcaacaagaaatgactcaaagccgttcccataaacccatatctgctgaccagatgaaagttaagatgtcggctaataagctcgaggtcagatcggagctcaagctcgaggtctggaaaactagatcagggacttggggtcagagcgaggcaggggaactcggggtcagagagcgaggtcggggactcggggtcaggttggaggcggctccagtaggcttaggttggagaatgaggtcgggagtcgacgcaggtcagcttggagaaggagatcgggagtcgatgcaggtcagcttggagaaggaggtctggagtcgatcgttatctagggagactgttggttacttcttctgtctagaggaccgagctttactctgtaggaaatgcgacgttgccatacacacagcaaactcctacgtgtctagtcaccaaaggtttttgcttcccggagtggaagtggggcttgaagcaactgaaccatgtaactccccctctacaaaggaaaagttgagttctgtggaaacagtttctgaatcagcatcatctccatcaatccccagaagtgtcatagatcattttagtactggtgagataaaagacacaattcctatgcaaattggtggcattgggactcttggatcagacaagataccgttaaaccgaagtaccactacctctgtgggtactatttcggggtggctcttggaagaatgtcttggattaacttatcctaatcagaataacggaagcttggacactatgccatcaaaggtttatggaagctactacgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

288

Amino Acids

31.57

Weight (kDa)

6.02

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78600 AT1G78600
fragaria_vesca	FvH4_6g37790
malus_domestica	MD09G1155900.v1.1
prunus_persica	Prupe.8G109100_v2.0.a1
pyrus_communis	pycom09g07470
rosa_chinensis	RchiOBHm_Chr2g0150861
rosa_laevigata	RLG00000020514
rosa_multiflora	Rmu_sc0000185.1_g000012 Rmu_sc0007617.1_g000006
rosa_rugosa	Rorug02G0423000
rosa_samantha	Rh2AG483300 Rh2BG495700 Rh2CG469600 Rh2DG506600
rosa_wichuraiana	Rw2G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	314, 349
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	863
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	718
AfaI	GTAC	3 cut(s)	655, 739, 757
AflIII	ACRYGT	2 cut(s)	489, 861
AgsI	TTSAA	1 cut(s)	539
AhdI	GACNNNNNGTC	2 cut(s)	210, 263
AjnI	CCWGG	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	9 cut(s)	34, 154, 172, 178, 331, 366, 440, 822, 855
AluI	AGCT	9 cut(s)	34, 154, 172, 178, 331, 366, 440, 822, 855
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	718
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	4 cut(s)	155, 179, 233, 260
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	491, 671
AvaI	CYCGRG	4 cut(s)	155, 179, 233, 260
AvaII	GGWCC	1 cut(s)	433
BaeI	ACNNNNGTAYC	2 cut(s)	721, 754
BanII	GRGCYC	1 cut(s)	174
BarI	GAAGNNNNNNTAC	2 cut(s)	727, 759
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	628, 844
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	62
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	4 cut(s)	195, 399, 428, 495
BfmI	CTRYAG	1 cut(s)	448
BfuAI	ACCTGC	2 cut(s)	314, 349
BisI	GCNGC	2 cut(s)	35, 279
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	2 cut(s)	36, 280
BmcAI	AGTACT	1 cut(s)	655
Bme1390I	CCNGG	2 cut(s)	62, 519
Bme18I	GGWCC	1 cut(s)	433
BmeRI	GACNNNNNGTC	2 cut(s)	210, 263
BmeT110I	CYCGRG	4 cut(s)	155, 179, 233, 260
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	62, 519
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	3 cut(s)	16, 345, 620
BmuI	ACTGGG	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	324
BplI	GAGNNNNNCTC	2 cut(s)	429, 461
BpmI	CTGGAG	2 cut(s)	267, 403
Bpu10I	CCTNAGC	1 cut(s)	292
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	519
BsaAI	YACGTR	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bse1I	ACTGG	3 cut(s)	39, 284, 661
Bse8I	GATNNNNATC	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	3 cut(s)	39, 284, 661
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	863
Bsh1285I	CGRYCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	4 cut(s)	155, 179, 233, 260
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	3 cut(s)	217, 270, 715
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	3 cut(s)	217, 270, 715
BsnI	GGCC	1 cut(s)	52
BsoBI	CYCGRG	4 cut(s)	155, 179, 233, 260
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	863
BspLI	GGNNCC	1 cut(s)	282
BspMI	ACCTGC	2 cut(s)	314, 349
BspPI	GGATC	1 cut(s)	718
BsrI	ACTGG	3 cut(s)	39, 284, 661
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	409, 598, 726
BstBAI	YACGTR	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	30, 292
BstFNI	CGCG	1 cut(s)	863
BstKTI	GATC	6 cut(s)	167, 200, 346, 392, 646, 713
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
BstMCI	CGRYCG	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	62
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	60, 517
BstSFI	CTRYAG	1 cut(s)	448
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	52
BveI	ACCTGC	2 cut(s)	314, 349
CaiI	CAGNNNCTG	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	654, 738, 756
CviAII	CATG	1 cut(s)	552
CviQI	GTAC	3 cut(s)	654, 738, 756
DdeI	CTNAG	2 cut(s)	30, 292
DpnI	GATC	6 cut(s)	166, 199, 345, 391, 645, 712
DpnII	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
DriI	GACNNNNNGTC	2 cut(s)	210, 263
Eam1105I	GACNNNNNGTC	2 cut(s)	210, 263
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	4 cut(s)	155, 179, 233, 260
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	555
FaiI	YATR	8 cut(s)	105, 113, 470, 553, 641, 683, 833, 849
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 771, 803
FaqI	GGGAC	3 cut(s)	217, 270, 715
FatI	CATG	1 cut(s)	551
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	35, 279
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	35, 279
FspBI	CTAG	4 cut(s)	195, 399, 428, 495
GluI	GCNGC	2 cut(s)	35, 279
GsuI	CTGGAG	2 cut(s)	267, 403
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	555
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	7 cut(s)	88, 258, 315, 350, 385, 605, 703
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	2 cut(s)	491, 671
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	7 cut(s)	164, 169, 216, 242, 604, 715, 810
Hpy188III	TCNNGA	5 cut(s)	187, 312, 347, 382, 428
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	2 cut(s)	323, 464
HpyAV	CCTTC	2 cut(s)	332, 367
HpyCH4III	ACNGT	3 cut(s)	409, 598, 726
HpyCH4IV	ACGT	2 cut(s)	462, 489
HpyCH4V	TGCA	2 cut(s)	358, 685
HpyF3I	CTNAG	2 cut(s)	30, 292
HpySE526I	ACGT	2 cut(s)	462, 489
Hsp92II	CATG	1 cut(s)	555
Kzo9I	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
LmnI	GCTCC	2 cut(s)	169, 286
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	3 cut(s)	16, 345, 620
MaeI	CTAG	4 cut(s)	195, 399, 428, 495
MaeII	ACGT	2 cut(s)	462, 489
MaeIII	GTNAC	3 cut(s)	413, 497, 554
MalI	GATC	6 cut(s)	166, 199, 345, 391, 645, 712
MboI	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
MboII	GAAGA	2 cut(s)	412, 791
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	675, 687
MluI	ACGCGT	1 cut(s)	861
MlyI	GAGTC	6 cut(s)	82, 252, 324, 359, 394, 697
MmeI	TCCRAC	2 cut(s)	252, 278
MseI	TTAA	3 cut(s)	135, 728, 794
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	2 cut(s)	62, 519
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	863
NciI	CCSGG	1 cut(s)	519
NdeII	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
NlaIII	CATG	1 cut(s)	555
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	497
PaeR7I	CTCGAG	2 cut(s)	155, 179
PceI	AGGCCT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	36, 280
Ple19I	CGATCG	1 cut(s)	392
PleI	GAGTC	6 cut(s)	82, 252, 323, 358, 393, 697
PpsI	GAGTC	6 cut(s)	82, 252, 323, 358, 393, 697
Ppu21I	YACGTR	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	433
PspXI	VCTCGAGB	2 cut(s)	155, 179
PstNI	CAGNNNCTG	1 cut(s)	602
PvuI	CGATCG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	3 cut(s)	655, 739, 757
RsaNI	GTAC	3 cut(s)	654, 738, 756
SacI	GAGCTC	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	135, 728, 794
SatI	GCNGC	2 cut(s)	35, 279
Sau3AI	GATC	6 cut(s)	164, 197, 343, 389, 643, 710
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	655
SchI	GAGTC	6 cut(s)	82, 252, 324, 359, 394, 697
ScrFI	CCNGG	2 cut(s)	62, 519
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	3 cut(s)	16, 345, 620
SfcI	CTRYAG	1 cut(s)	448
Sfr274I	CTCGAG	2 cut(s)	155, 179
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	2 cut(s)	155, 179
SmlI	CTYRAG	3 cut(s)	155, 173, 179
SmoI	CTYRAG	3 cut(s)	155, 173, 179
Sse9I	AATT	2 cut(s)	675, 687
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	4 cut(s)	195, 399, 428, 495
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	60, 517
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	3 cut(s)	409, 598, 726
TaiI	ACGT	2 cut(s)	465, 492
TaqI	TCGA	5 cut(s)	156, 180, 318, 353, 388
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	675, 687
TatI	WGTACW	1 cut(s)	653
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	3 cut(s)	135, 728, 794
Tru9I	TTAA	3 cut(s)	135, 728, 794
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	831
VpaK11BI	GGWCC	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	748
XhoI	CTCGAG	2 cut(s)	155, 179
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	4 cut(s)	195, 399, 428, 495
ZrmI	AGTACT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.