Rh2AG483300

salt tolerance-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
70406106 .. 70407371
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG483300.1

Sequence Viewer

Length: 474 bp
ATGGATAGGGAGACTGTTGGTTACTTCTTCTGTCTAGAGGACCGAGCTTTACTCTGTAGGAAATGCGACGTTGCCATACACACAGCAAACTCCTACGTGTCTAGTCACCAAAGGTTTTTGCTTACTGGAGTGGAAGTGGGGCTTGAAGCAACTGAACCATGTATCTCCCCCTCTACAAAGGAAAAGTTGACTTCTGTGGAAACAGTTTCTGAATCAGCATCATCTCCATCAATCCCCAGAAGTGTCATAGATCATTTTAGTACTGGTGAGATAAAAGACACAATTCCTATGCAAATTGGTAGCATTGGGACTCTTGAATCAGACAAGATACCGTTAAACCGAAGTACCACTACCTCTGTGGGTACTATTTCGGGGTGGCTCTTGGAAGAATGTCTTGGATTAACTTATCCTAATCAGAATAACGGATGCTTGGACACTATGCCATCAAAGGTTTATGGAAGCTACTACGCGTGA

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

4.88

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78600 AT1G78600
fragaria_vesca FvH4_6g37790
malus_domestica MD09G1155900.v1.1
prunus_persica Prupe.8G109100_v2.0.a1
pyrus_communis pycom09g07470
rosa_chinensis RchiOBHm_Chr2g0150861
rosa_laevigata RLG00000020514
rosa_multiflora Rmu_sc0000185.1_g000012 Rmu_sc0007617.1_g000006
rosa_rugosa Rorug02G0423000
rosa_samantha Rh2AG483300 Rh2BG495700 Rh2CG469600 Rh2DG506600
rosa_wichuraiana Rw2G039610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 470
AfaI GTAC 3 cut(s) 262, 346, 364
AflIII ACRYGT 2 cut(s) 96, 468
AgsI TTSAA 2 cut(s) 146, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AluBI AGCT 2 cut(s) 47, 462
AluI AGCT 2 cut(s) 47, 462
Alw26I GTCTC 1 cut(s) 5
AlwNI CAGNNNCTG 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 98, 278
AvaII GGWCC 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BccI CCATC 2 cut(s) 235, 451
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 35, 102
BfmI CTRYAG 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 2 cut(s) 227, 416
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bse1I ACTGG 2 cut(s) 130, 268
BseGI GGATG 1 cut(s) 431
BseNI ACTGG 2 cut(s) 130, 268
Bsh1236I CGCG 1 cut(s) 470
BslFI GGGAC 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 250
BspFNI CGCG 1 cut(s) 470
BsrI ACTGG 2 cut(s) 130, 268
BssMI GATC 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 16, 205, 333
BstBAI YACGTR 1 cut(s) 97
BstF5I GGATG 1 cut(s) 431
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 470
BtsCI GGATG 1 cut(s) 431
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 261, 345, 363
CviAII CATG 1 cut(s) 159
CviJI RGCY 4 cut(s) 47, 142, 379, 462
CviKI_1 RGCY 4 cut(s) 47, 142, 379, 462
CviQI GTAC 3 cut(s) 261, 345, 363
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 40
FaeI CATG 1 cut(s) 162
FaiI YATR 6 cut(s) 77, 160, 248, 290, 440, 456
FalI AAGNNNNNCTT 4 cut(s) 126, 158, 378, 410
FaqI GGGAC 1 cut(s) 322
FatI CATG 1 cut(s) 158
FokI GGATG 1 cut(s) 438
FspBI CTAG 2 cut(s) 35, 102
GsuI CTGGAG 1 cut(s) 147
Hin1II CATG 1 cut(s) 162
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 3 cut(s) 212, 310, 317
HphI GGTGA 2 cut(s) 98, 278
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 3 cut(s) 211, 322, 417
Hpy188III TCNNGA 2 cut(s) 35, 314
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 3 cut(s) 16, 205, 333
HpyCH4IV ACGT 2 cut(s) 69, 96
HpyCH4V TGCA 1 cut(s) 292
HpySE526I ACGT 2 cut(s) 69, 96
Hsp92II CATG 1 cut(s) 162
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 3 cut(s) 111, 249, 250
LweI GCATC 2 cut(s) 227, 416
MaeI CTAG 2 cut(s) 35, 102
MaeII ACGT 2 cut(s) 69, 96
MaeIII GTNAC 2 cut(s) 20, 104
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 19, 398
MluCI AATT 2 cut(s) 282, 294
MluI ACGCGT 1 cut(s) 468
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 3 cut(s) 31, 181, 364
MseI TTAA 2 cut(s) 335, 401
MvnI CGCG 1 cut(s) 470
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 212, 317
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 97
PspPI GGNCC 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 209
RsaI GTAC 3 cut(s) 262, 346, 364
RsaNI GTAC 3 cut(s) 261, 345, 363
SaqAI TTAA 2 cut(s) 335, 401
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 40
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 304
SetI ASST 7 cut(s) 49, 72, 99, 116, 356, 453, 464
SfaNI GCATC 2 cut(s) 227, 416
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 40
Sse9I AATT 2 cut(s) 282, 294
SspMI CTAG 2 cut(s) 35, 102
TaaI ACNGT 3 cut(s) 16, 205, 333
TaiI ACGT 2 cut(s) 72, 99
TaqII GACCGA 1 cut(s) 57
TasI AATT 2 cut(s) 282, 294
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 2 cut(s) 212, 317
Tru1I TTAA 2 cut(s) 335, 401
Tru9I TTAA 2 cut(s) 335, 401
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 40
XbaI TCTAGA 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 2 cut(s) 35, 102
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.