Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015020

Physical Location & Seq

Genomic Coordinates Reverse (-)

29750190 .. 29757327

Gene Structure 7138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGAGGCGGAGGCGGTCGAAATAAGGTTTGAAGCAACACCGTTGGCTAGTGGTTGTGGTATTATGGAGCTCAAAGAAGCAAAAAGACCTAAGATACACAAAACGATAGAGATGACGATACAGTGCAATGCGTGCGAGGTGGCAGAGGCCAAAGTGTTGTGTTGCGCGGACGAGGCAACCTTATGCTGGGGATGCGATCAGAAGATCCACGCCGCCAATAAGTTGGCCAGTAAACACAAGAGAGTCCCTCTCTCTTCTTCATCAATGCCCAAGTGCGACATCTGCCAGTCCACACAAGGCCCATCAAGCATGGCCTGCCTCAAAAATCCACCTCTACCTCCACCTCGTCGATCGATCTCCACCTCCATACCGCCGACCAGCCTCACACCACGCCACATCAAGATCCCACCTCCGCTCCGAGATCATGATGATCCAATCCTTGTGTCACTGGCACAAGCAGTAGCTACAAACCCCGTCGATTGCAGTCCGCTCCAAACTCTCCATCAAGCATCAACGAAACAGAGGCCTTCGTCGACCGGCAATCCTCCACCTCTCATCGACTGGCGATCTTCCACCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

195

Amino Acids

20.96

Weight (kDa)

8.3

Isoelectric Point (pI)

65.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78600 AT1G78600
fragaria_vesca	FvH4_6g37790
malus_domestica	MD09G1155900.v1.1
prunus_persica	Prupe.8G109100_v2.0.a1
pyrus_communis	pycom09g07470
rosa_chinensis	RchiOBHm_Chr2g0150861
rosa_laevigata	RLG00000020514
rosa_multiflora	Rmu_sc0000185.1_g000012 Rmu_sc0007617.1_g000006
rosa_rugosa	Rorug02G0423000
rosa_samantha	Rh2AG483300 Rh2BG495700 Rh2CG469600 Rh2DG506600
rosa_wichuraiana	Rw2G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	418, 493
AccI	GTMKAC	1 cut(s)	536
AccII	CGCG	1 cut(s)	170
AciI	CCGC	7 cut(s)	11, 17, 170, 216, 374, 416, 491
AclWI	GGATC	3 cut(s)	202, 400, 428
AcoI	YGGCCR	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	2 cut(s)	73, 467
AluI	AGCT	2 cut(s)	73, 467
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	3 cut(s)	202, 400, 428
AoxI	GGCC	5 cut(s)	150, 228, 301, 315, 527
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	2 cut(s)	313, 513
BfaI	CTAG	2 cut(s)	51, 583
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	302
BmsI	GCATC	2 cut(s)	185, 521
BplI	GAGNNNNNCTC	4 cut(s)	235, 267, 237, 269
Bsa29I	ATCGAT	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	4 cut(s)	231, 289, 456, 569
Bse3DI	GCAATG	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	356
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	136
BseNI	ACTGG	4 cut(s)	231, 289, 456, 569
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	3 cut(s)	21, 356, 540
BshFI	GGCC	5 cut(s)	152, 230, 303, 317, 529
BshVI	ATCGAT	1 cut(s)	356
BsiEI	CGRYCG	3 cut(s)	21, 356, 540
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	5 cut(s)	152, 230, 303, 317, 529
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
BspACI	CCGC	7 cut(s)	11, 17, 170, 216, 374, 416, 491
BspANI	GGCC	5 cut(s)	152, 230, 303, 317, 529
BspDI	ATCGAT	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	427
BspPI	GGATC	3 cut(s)	202, 400, 428
BsrBI	CCGCTC	2 cut(s)	418, 493
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	4 cut(s)	231, 289, 456, 569
BssAI	RCCGGY	1 cut(s)	539
BssMI	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
Bst4CI	ACNGT	2 cut(s)	45, 126
Bst6I	CTCTTC	1 cut(s)	262
BstAPI	GCANNNNNTGC	2 cut(s)	135, 318
BstC8I	GCNNGC	2 cut(s)	136, 319
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	8 cut(s)	202, 210, 356, 360, 408, 427, 436, 572
BstMBI	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
BstMCI	CGRYCG	3 cut(s)	21, 356, 540
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 176, 195, 285, 309, 318
BstUI	CGCG	1 cut(s)	170
BstX2I	RGATCY	2 cut(s)	207, 405
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	2 cut(s)	207, 405
Bsu15I	ATCGAT	1 cut(s)	356
BsuRI	GGCC	5 cut(s)	152, 230, 303, 317, 529
BsuTUI	ATCGAT	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	131, 449
Cac8I	GCNNGC	2 cut(s)	136, 319
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	356
CviAII	CATG	2 cut(s)	313, 428
CviJI	RGCY	9 cut(s)	50, 73, 152, 230, 303, 317, 384, 467, 529
CviKI_1	RGCY	9 cut(s)	50, 73, 152, 230, 303, 317, 384, 467, 529
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	8 cut(s)	201, 209, 355, 359, 407, 426, 435, 571
DpnII	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	2 cut(s)	316, 431
FaiI	YATR	5 cut(s)	68, 187, 314, 371, 429
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	312, 427
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	51, 583
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	5 cut(s)	152, 230, 303, 317, 529
HapII	CCGG	1 cut(s)	540
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	316, 431
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	540
Hpy166II	GTNNAC	3 cut(s)	236, 294, 537
Hpy188I	TCNGA	2 cut(s)	204, 422
Hpy188III	TCNNGA	2 cut(s)	403, 428
Hpy8I	GTNNAC	3 cut(s)	236, 294, 537
Hpy99I	CGWCG	3 cut(s)	354, 482, 538
HpyAV	CCTTC	1 cut(s)	540
HpyCH4III	ACNGT	2 cut(s)	45, 126
HpyCH4V	TGCA	2 cut(s)	129, 486
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 176, 195, 285, 309, 318
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	316, 431
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
LmnI	GCTCC	3 cut(s)	70, 423, 498
LpnPI	CCDG	8 cut(s)	175, 244, 302, 331, 394, 437, 550, 553
LweI	GCATC	2 cut(s)	185, 521
MaeI	CTAG	2 cut(s)	51, 583
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	8 cut(s)	201, 209, 355, 359, 407, 426, 435, 571
MbiI	CCGCTC	2 cut(s)	418, 493
MboI	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
MboII	GAAGA	5 cut(s)	17, 217, 249, 252, 564
MflI	RGATCY	2 cut(s)	207, 405
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	135, 176, 195, 285, 309, 318
NdeII	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
NlaIII	CATG	2 cut(s)	316, 431
NmuCI	GTSAC	1 cut(s)	447
PagI	TCATGA	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	529
PkrI	GCNGC	1 cut(s)	217
Ple19I	CGATCG	1 cut(s)	356
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	207, 405
PvuI	CGATCG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	535
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	8 cut(s)	199, 207, 353, 357, 405, 424, 433, 569
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	2 cut(s)	185, 521
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	7 cut(s)	11, 17, 170, 216, 374, 416, 491
SspMI	CTAG	2 cut(s)	51, 583
SstI	GAGCTC	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	45, 126
TaqI	TCGA	6 cut(s)	21, 352, 356, 480, 536, 561
TauI	GCSGC	1 cut(s)	218
TscAI	CASTG	2 cut(s)	131, 456
TseFI	GTSAC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	131, 456
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	2 cut(s)	51, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.