AT1G78710

trichome birefringence-like 42

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017480
Physical Location & Seq
Forward (+)
29601253 .. 29604610
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78710.1

Sequence Viewer

Length: 1080 bp
ATGAATTTCCATCAGGTCCTCTTTCTCCTTCTTCTTATTTTTCTTGTTGATTTATCAGATTATGGTGTCTTAGCAGATAAGACCAATGATGGTTACAAGAACGCAACAAAGTGTAACATTTACCAAGGACGTTGGATTTATGACAATTCTTCTAATCCTCTTTATGGAACATCAACTTGTCCGTTCATTGGATTGGATTGCCAGAAGTTTGGTCGGCCGGACAAGAACTACCTTCATTACCGATGGCAACCCACCGGATGTGACATCCCAAGATTCAACGGACGAGATTTCTTAACAAGATTCAAAGGGAAAAAAATACTGTTTGTGGGAGATTCACTAAGCAACAATATGTGGGTGTCACTAAGTTGCATGCTTCACGCGGCCGTTCCTAACGCTAAGTATACCTTCCAACTCAACAAGGGCCTCTCAACTTTCACCATTCCAGAATATGGAATATCTGTAAATTTCCTGAAAAATGGGTTCCTGGTGGATTTGGTATCGGACAAAACAAGAGGATTGATTCTGAAATTAGATTCGATCAGTAGGGGAAATCAATGGTTGGGATCTGATGTCGCCATCTTTAACACATTCCACTGGTGGTCTCACACTGGCCGTGCCAAAACATGGGATTATTTTCAAACGGGAGATAAAATAGTGAAAGAGATGAATAGAATGGAGGCTTTCAAGATTGCTTTGACAACTTGGTCTAAATGGATTGATCACAATATCGATCCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTTAAATGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGTGAGACGGTACCAGTGCAAGGACCAAGTTACCCCGGACGACCTAATGAAGGTGAAGCTATAGTGAAAAGTGTGATCGGAAGGATGGCTAAACCAGTGGAGCTCCTTGATGTGACGGCTATGACGGAGATGAGGAAGGACGGTCACCCTTCCATCTATGCCGGTGGAGGCGATCGCTTAAACGACTGCAGCCATTGGTGCCTCCCTGGAGTCCCAGACGCTTGGAACCAGCTCCTTTATACAGCTCTTCTCAGCCACTAG

Protein Analysis

359

Amino Acids

40.57

Weight (kDa)

8.87

Isoelectric Point (pI)

21.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 37 - 88 5.8e-20 PMR5 N terminal Domain
PC-Esterase PF13839 89 - 354 5.8e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78710 AT1G78710
malus_domestica MD11G1269200.v1.1
prunus_persica Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0029581
rosa_laevigata RLG00000033182
rosa_multiflora Rmu_sc0001608.1_g000004
rosa_roxburghii Rroxscaffold_1G00050350
rosa_samantha Rh5AG207400 Rh5CG228000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 703
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 2 cut(s) 829, 1017
AccB7I CCANNNNNTGG 2 cut(s) 449, 624
AccI GTMKAC 1 cut(s) 401
AccII CGCG 1 cut(s) 380
AciI CCGC 1 cut(s) 380
AclWI GGATC 2 cut(s) 571, 725
AcoI YGGCCR 3 cut(s) 215, 381, 610
AcsI RAATTY 2 cut(s) 4, 463
AcyI GRCGYC 1 cut(s) 762
AfaI GTAC 1 cut(s) 831
AfiI CCNNNNNNNGG 6 cut(s) 164, 188, 449, 624, 839, 869
AgsI TTSAA 5 cut(s) 277, 304, 638, 685, 738
AjnI CCWGG 2 cut(s) 483, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 800, 832
AluBI AGCT 4 cut(s) 878, 922, 1051, 1064
AluI AGCT 4 cut(s) 878, 922, 1051, 1064
Alw21I GWGCWC 1 cut(s) 924
Alw26I GTCTC 3 cut(s) 606, 769, 818
AlwI GGATC 2 cut(s) 571, 725
AoxI GGCC 4 cut(s) 215, 381, 421, 610
ApeKI GCWGC 1 cut(s) 1008
ApoI RAATTY 2 cut(s) 4, 463
AsiSI GCGATCGC 1 cut(s) 994
Asp718I GGTACC 1 cut(s) 829
AspS9I GGNCC 3 cut(s) 16, 421, 842
AsuC2I CCSGG 2 cut(s) 804, 855
AsuHPI GGTGA 5 cut(s) 427, 800, 833, 884, 956
AvaII GGWCC 2 cut(s) 16, 842
BanI GGYRCC 2 cut(s) 829, 1017
BanII GRGCYC 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 815
Bbv12I GWGCWC 1 cut(s) 924
BbvI GCAGC 1 cut(s) 1020
BccI CCATC 6 cut(s) 18, 83, 237, 584, 898, 980
BceAI ACGGC 3 cut(s) 368, 597, 951
BciT130I CCWGG 2 cut(s) 485, 1026
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 2 cut(s) 804, 855
BcoDI GTCTC 3 cut(s) 606, 769, 818
BfaI CTAG 2 cut(s) 744, 1078
BfmI CTRYAG 2 cut(s) 879, 1006
BisI GCNGC 2 cut(s) 381, 1009
BlsI GCNGC 2 cut(s) 382, 1010
Bme1390I CCNGG 4 cut(s) 485, 804, 855, 1026
Bme18I GGWCC 2 cut(s) 16, 842
BmgT120I GGNCC 3 cut(s) 16, 421, 842
BmiI GGNNCC 4 cut(s) 482, 831, 1019, 1046
BmrFI CCNGG 4 cut(s) 485, 804, 855, 1026
BpiI GAAGAC 1 cut(s) 815
BpmI CTGGAG 1 cut(s) 1047
BpuMI CCSGG 2 cut(s) 804, 855
Bsa29I ATCGAT 1 cut(s) 729
BsaHI GRCGYC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 606
BsaJI CCNNGG 4 cut(s) 124, 803, 853, 1024
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 6 cut(s) 164, 188, 449, 624, 839, 869
Bse118I RCCGGY 1 cut(s) 980
Bse1I ACTGG 4 cut(s) 599, 613, 833, 914
BseBI CCWGG 2 cut(s) 485, 1026
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 4 cut(s) 124, 803, 853, 1024
BseGI GGATG 3 cut(s) 263, 264, 909
BseLI CCNNNNNNNGG 6 cut(s) 164, 188, 449, 624, 839, 869
BseNI ACTGG 4 cut(s) 599, 613, 833, 914
BseX3I CGGCCG 2 cut(s) 215, 381
BseXI GCAGC 1 cut(s) 1020
Bsh1236I CGCG 1 cut(s) 380
Bsh1285I CGRYCG 3 cut(s) 218, 384, 994
BshFI GGCC 4 cut(s) 217, 383, 423, 612
BshNI GGYRCC 2 cut(s) 829, 1017
BshVI ATCGAT 1 cut(s) 729
BsiEI CGRYCG 3 cut(s) 218, 384, 994
BsiHKAI GWGCWC 1 cut(s) 924
BsiSI CCGG 5 cut(s) 218, 255, 803, 855, 981
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 6 cut(s) 164, 188, 449, 624, 839, 869
BsmAI GTCTC 3 cut(s) 606, 769, 818
BsmBI CGTCTC 2 cut(s) 769, 818
BsmFI GGGAC 1 cut(s) 1016
BsnI GGCC 4 cut(s) 217, 383, 423, 612
Bso31I GGTCTC 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 924
Bsp143I GATC 6 cut(s) 537, 563, 718, 730, 894, 991
BspACI CCGC 1 cut(s) 380
BspANI GGCC 4 cut(s) 217, 383, 423, 612
BspDI ATCGAT 1 cut(s) 729
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 4 cut(s) 482, 831, 1019, 1046
BspMAI CTGCAG 1 cut(s) 1010
BspPI GGATC 2 cut(s) 571, 725
BspQI GCTCTTC 1 cut(s) 1071
BspT107I GGYRCC 2 cut(s) 829, 1017
BspTNI GGTCTC 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 980
BsrI ACTGG 4 cut(s) 599, 613, 833, 914
BssAI RCCGGY 1 cut(s) 980
BssECI CCNNGG 4 cut(s) 124, 803, 853, 1024
BssMI GATC 6 cut(s) 537, 563, 718, 730, 894, 991
BssNAI GTATAC 1 cut(s) 402
BssNI GRCGYC 1 cut(s) 762
BssT1I CCWWGG 1 cut(s) 124
Bst1107I GTATAC 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 485, 1026
Bst4CI ACNGT 3 cut(s) 321, 829, 962
Bst6I CTCTTC 1 cut(s) 1071
BstACI GRCGYC 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 5 cut(s) 70, 338, 362, 396, 1070
BstEII GGTNACC 1 cut(s) 962
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 3 cut(s) 263, 264, 909
BstFNI CGCG 1 cut(s) 380
BstKTI GATC 6 cut(s) 540, 566, 721, 733, 897, 994
BstMAI GTCTC 3 cut(s) 606, 769, 818
BstMBI GATC 6 cut(s) 537, 563, 718, 730, 894, 991
BstMCI CGRYCG 3 cut(s) 218, 384, 994
BstMWI GCNNNNNNNGC 1 cut(s) 1017
BstNI CCWGG 2 cut(s) 485, 1026
BstNSI RCATGY 1 cut(s) 373
BstPI GGTNACC 1 cut(s) 962
BstSCI CCNGG 4 cut(s) 483, 802, 853, 1024
BstSFI CTRYAG 2 cut(s) 879, 1006
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 1020
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 1 cut(s) 563
BstXI CCANNNNNNTGG 2 cut(s) 209, 1041
BstYI RGATCY 1 cut(s) 563
BstZ17I GTATAC 1 cut(s) 402
BstZI CGGCCG 2 cut(s) 215, 381
Bsu15I ATCGAT 1 cut(s) 729
BsuRI GGCC 4 cut(s) 217, 383, 423, 612
BsuTUI ATCGAT 1 cut(s) 729
BtsCI GGATG 3 cut(s) 263, 264, 909
BtsIMutI CAGTG 4 cut(s) 592, 606, 840, 921
Cac8I GCNNGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 980
Cfr13I GGNCC 3 cut(s) 16, 421, 842
ClaI ATCGAT 1 cut(s) 729
CseI GACGC 2 cut(s) 751, 1046
Csp6I GTAC 1 cut(s) 830
CviAII CATG 2 cut(s) 370, 624
CviQI GTAC 1 cut(s) 830
DdeI CTNAG 5 cut(s) 70, 338, 362, 396, 1070
DpnI GATC 6 cut(s) 539, 565, 720, 732, 896, 993
DpnII GATC 6 cut(s) 537, 563, 718, 730, 894, 991
DrdI GACNNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 3 cut(s) 215, 381, 610
EagI CGGCCG 2 cut(s) 215, 381
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
Ecl136II GAGCTC 1 cut(s) 922
EclXI CGGCCG 2 cut(s) 215, 381
Eco130I CCWWGG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 924
Eco31I GGTCTC 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 16, 842
Eco52I CGGCCG 2 cut(s) 215, 381
Eco53kI GAGCTC 1 cut(s) 922
Eco91I GGTNACC 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 922
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoO109I RGGNCCY 2 cut(s) 16, 421
EcoO65I GGTNACC 1 cut(s) 962
EcoRII CCWGG 2 cut(s) 483, 1024
EcoT14I CCWWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 2 cut(s) 769, 818
FaeI CATG 2 cut(s) 373, 627
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 800, 832
FaqI GGGAC 1 cut(s) 1016
FatI CATG 2 cut(s) 369, 623
FbaI TGATCA 1 cut(s) 718
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 2 cut(s) 381, 1009
FokI GGATG 3 cut(s) 251, 270, 916
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 2 cut(s) 381, 1009
FspBI CTAG 2 cut(s) 744, 1078
GluI GCNGC 2 cut(s) 381, 1009
GsuI CTGGAG 1 cut(s) 1047
HaeIII GGCC 4 cut(s) 217, 383, 423, 612
HapII CCGG 5 cut(s) 218, 255, 803, 855, 981
HgaI GACGC 2 cut(s) 751, 1046
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 2 cut(s) 373, 627
HinfI GANTC 6 cut(s) 273, 300, 332, 520, 533, 1029
HpaII CCGG 5 cut(s) 218, 255, 803, 855, 981
HphI GGTGA 5 cut(s) 427, 800, 833, 884, 956
Hpy166II GTNNAC 3 cut(s) 402, 775, 800
Hpy188I TCNGA 5 cut(s) 58, 502, 525, 568, 899
Hpy188III TCNNGA 3 cut(s) 443, 469, 685
Hpy8I GTNNAC 3 cut(s) 402, 775, 800
HpyAV CCTTC 8 cut(s) 38, 242, 415, 744, 863, 894, 949, 978
HpyCH4III ACNGT 3 cut(s) 321, 829, 962
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 369, 838, 1008
HpyF10VI GCNNNNNNNGC 1 cut(s) 1017
HpyF3I CTNAG 5 cut(s) 70, 338, 362, 396, 1070
HpySE526I ACGT 1 cut(s) 130
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 2 cut(s) 373, 627
KpnI GGTACC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 6 cut(s) 537, 563, 718, 730, 894, 991
LguI GCTCTTC 1 cut(s) 1071
LmnI GCTCC 3 cut(s) 919, 927, 1056
Lsp1109I GCAGC 1 cut(s) 1020
MaeI CTAG 2 cut(s) 744, 1078
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 7 cut(s) 92, 113, 260, 357, 848, 931, 962
MalI GATC 6 cut(s) 539, 565, 720, 732, 896, 993
MboI GATC 6 cut(s) 537, 563, 718, 730, 894, 991
MboII GAAGA 4 cut(s) 23, 141, 820, 1058
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 924
MluCI AATT 4 cut(s) 4, 145, 463, 527
MlyI GAGTC 1 cut(s) 1038
MmeI TCCRAC 2 cut(s) 113, 433
MnlI CCTC 8 cut(s) 29, 168, 434, 506, 670, 945, 980, 1031
MseI TTAA 4 cut(s) 293, 582, 779, 998
MslI CAYNNNNRTG 1 cut(s) 780
MspI CCGG 5 cut(s) 218, 255, 803, 855, 981
MspR9I CCNGG 4 cut(s) 485, 804, 855, 1026
MvaI CCWGG 2 cut(s) 485, 1026
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 1017
NciI CCSGG 2 cut(s) 804, 855
NdeII GATC 6 cut(s) 537, 563, 718, 730, 894, 991
NlaIII CATG 2 cut(s) 373, 627
NlaIV GGNNCC 4 cut(s) 482, 831, 1019, 1046
NmuCI GTSAC 4 cut(s) 260, 357, 931, 962
NspI RCATGY 1 cut(s) 373
PaeI GCATGC 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 1071
PfeI GAWTC 5 cut(s) 273, 300, 332, 520, 533
PflMI CCANNNNNTGG 2 cut(s) 449, 624
PkrI GCNGC 2 cut(s) 382, 1010
Ple19I CGATCG 1 cut(s) 994
PleI GAGTC 1 cut(s) 1037
PpsI GAGTC 1 cut(s) 1037
PpuMI RGGWCCY 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 483, 1024
PspEI GGTNACC 1 cut(s) 962
PspGI CCWGG 2 cut(s) 483, 1024
PspN4I GGNNCC 4 cut(s) 482, 831, 1019, 1046
PspPI GGNCC 3 cut(s) 16, 421, 842
PspPPI RGGWCCY 1 cut(s) 16
PstI CTGCAG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 563
PvuI CGATCG 1 cut(s) 994
RgaI GCGATCGC 1 cut(s) 994
RsaI GTAC 1 cut(s) 831
RsaNI GTAC 1 cut(s) 830
RseI CAYNNNNRTG 1 cut(s) 780
SacI GAGCTC 1 cut(s) 924
SapI GCTCTTC 1 cut(s) 1071
SaqAI TTAA 4 cut(s) 293, 582, 779, 998
SatI GCNGC 2 cut(s) 381, 1009
Sau3AI GATC 6 cut(s) 537, 563, 718, 730, 894, 991
Sau96I GGNCC 3 cut(s) 16, 421, 842
SchI GAGTC 1 cut(s) 1038
ScrFI CCNGG 4 cut(s) 485, 804, 855, 1026
SduI GDGCHC 1 cut(s) 924
SfaAI GCGATCGC 1 cut(s) 994
SfcI CTRYAG 2 cut(s) 879, 1006
SgfI GCGATCGC 1 cut(s) 994
SinI GGWCC 2 cut(s) 16, 842
SmiMI CAYNNNNRTG 1 cut(s) 780
SphI GCATGC 1 cut(s) 373
Sse9I AATT 4 cut(s) 4, 145, 463, 527
SsiI CCGC 1 cut(s) 380
SspMI CTAG 2 cut(s) 744, 1078
SstI GAGCTC 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 483, 802, 853, 1024
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 3 cut(s) 321, 829, 962
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 536, 729
TasI AATT 4 cut(s) 4, 145, 463, 527
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 5 cut(s) 273, 300, 332, 520, 533
Tru1I TTAA 4 cut(s) 293, 582, 779, 998
Tru9I TTAA 4 cut(s) 293, 582, 779, 998
TscAI CASTG 4 cut(s) 599, 613, 840, 921
TseFI GTSAC 4 cut(s) 260, 357, 931, 962
TseI GCWGC 1 cut(s) 1008
Tsp45I GTSAC 4 cut(s) 260, 357, 931, 962
TspDTI ATGAA 5 cut(s) 17, 175, 224, 680, 882
TspGWI ACGGA 3 cut(s) 171, 294, 959
TspRI CASTG 4 cut(s) 599, 613, 840, 921
Van91I CCANNNNNTGG 2 cut(s) 449, 624
VpaK11BI GGWCC 2 cut(s) 16, 842
XagI CCTNNNNNAGG 1 cut(s) 867
XapI RAATTY 2 cut(s) 4, 463
XceI RCATGY 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 2 cut(s) 744, 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.