MD11G1269200.v1.1

Protein trichome birefringence-like 42

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017480
Physical Location & Seq
Forward (+)
38500972 .. 38503885
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1269200.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGCACTGTGGGGTTTTCACCTTCTTCCTCTACTTCTTTCTTTTCTTTTACCGCCATCGTCATCGGCTGCCTGTGATTTTTTTCAAGGGCGTTGGGTTGTGGACGAGTTTTACCCACTTTACAATGGTTCAAGCTGTCCCTTCATTGGATTCAATTGCCTCAGCAATGGCAGACCTGACAAAGAGTACCTCAAATATAGATGGAAGCCCACTGCTTGTGACCTTCCAAGATTCAATGGTCAGGATTTCATGGAGAGAAACAGAGGCAAAAAAATCATGTTTGTGGGGGACTCACTAAGCAACAATATGTGGCAGTCATTGACATGCATGCTAAATGTTGCAGTCCCTAATTCTAAATACACCTTAACCCAAGCAGGGTCCCTCAACACATTTTACCTTGAGGAATATGGAGTGTCGATTATGTTTCTGAAAAATGGGTTCTTGGTGGATTTGGCTTATGAAAAGATTGGCAAAGTCCTGAAATTGGACTCCATCAGTACTGGCGACCAATGGAAAGGAGTAGACATACTGATTTTCAACAGCTTTCATTGGTGGGCTCATACCGGGCGTGCTCAAACATGGGACTATTTTCAAGTGGGAGACAAGGTGGTGAAAGAGATGGATCACATGGAGGCCTACAAGATTGCATTAACAACATGGGGTAAATGGGTTGATTCCAGCATTGATATTTCAATTACCAAAGTCTTTTTTCAAGGAGTAGCCGCTGTTCATACTGATGGCAAGGAATGGAAGGATCCAAAAGCAGGAAGTTGCCTAAGACAGACCCAACCAATTCTAGGACCAACTTATCCAGGACCAAGTCATCCGGGAGAAGCTATTGTAAAGAGTGTGTTAAGTGGCATGGAAAAGCCTGTGTATTTATTGGACATCACATTGCTCACGCAGCTCAGAAAAGATGGGCACCCCTCCATTTATGCAGGTGAAGGTCCCAAATATAATGACTGTAGTCACTGGTGTCTTCCTGGTGCTCCTGATACTTGGAATGAACTTTTGTACGCAGCTTTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

344

Amino Acids

38.76

Weight (kDa)

6.45

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 24 - 74 1.4e-21 PMR5 N terminal Domain
PC-Esterase PF13839 75 - 340 8.7e-91 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78710 AT1G78710
malus_domestica MD11G1269200.v1.1
prunus_persica Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0029581
rosa_laevigata RLG00000033182
rosa_multiflora Rmu_sc0001608.1_g000004
rosa_roxburghii Rroxscaffold_1G00050350
rosa_samantha Rh5AG207400 Rh5CG228000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 929
Acc36I ACCTGC 1 cut(s) 929
AccB1I GGYRCC 1 cut(s) 921
AccI GTMKAC 1 cut(s) 522
AciI CCGC 2 cut(s) 53, 723
AclWI GGATC 3 cut(s) 630, 749, 762
AfaI GTAC 3 cut(s) 188, 499, 1016
AfiI CCNNNNNNNGG 5 cut(s) 146, 375, 484, 764, 797
AgsI TTSAA 8 cut(s) 86, 132, 154, 235, 538, 593, 693, 713
AjnI CCWGG 2 cut(s) 811, 982
AluBI AGCT 5 cut(s) 135, 543, 836, 907, 1022
AluI AGCT 5 cut(s) 135, 543, 836, 907, 1022
Alw21I GWGCWC 2 cut(s) 574, 991
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 3 cut(s) 630, 749, 762
AoxI GGCC 1 cut(s) 633
ApeKI GCWGC 3 cut(s) 68, 904, 1019
AspS9I GGNCC 4 cut(s) 378, 800, 815, 947
AsuC2I CCSGG 2 cut(s) 565, 828
AsuHPI GGTGA 3 cut(s) 11, 622, 953
AvaII GGWCC 4 cut(s) 378, 800, 815, 947
BaeGI GKGCMC 1 cut(s) 924
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 921
BanII GRGCYC 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 971
Bbv12I GWGCWC 2 cut(s) 574, 991
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 55, 916
BccI CCATC 6 cut(s) 64, 195, 500, 613, 731, 911
BciT130I CCWGG 2 cut(s) 813, 984
BcnI CCSGG 2 cut(s) 565, 828
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 2 cut(s) 797, 1030
BfmI CTRYAG 1 cut(s) 964
BfuAI ACCTGC 1 cut(s) 929
BisI GCNGC 4 cut(s) 69, 723, 905, 1020
BlsI GCNGC 4 cut(s) 70, 724, 906, 1021
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 4 cut(s) 565, 813, 828, 984
Bme18I GGWCC 4 cut(s) 378, 800, 815, 947
BmgT120I GGNCC 4 cut(s) 378, 800, 815, 947
BmiI GGNNCC 5 cut(s) 379, 380, 756, 923, 949
BmrFI CCNGG 4 cut(s) 565, 813, 828, 984
BoxI GACNNNNGTC 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 971
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 565, 828
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 375, 484, 764, 797
Bse1I ACTGG 2 cut(s) 505, 977
Bse3DI GCAATG 2 cut(s) 172, 893
BseBI CCWGG 2 cut(s) 813, 984
BseGI GGATG 1 cut(s) 823
BseLI CCNNNNNNNGG 5 cut(s) 146, 375, 484, 764, 797
BseMI GCAATG 2 cut(s) 172, 893
BseMII CTCAG 2 cut(s) 175, 922
BseNI ACTGG 2 cut(s) 505, 977
BseSI GKGCMC 1 cut(s) 924
BseXI GCAGC 2 cut(s) 55, 916
BshFI GGCC 1 cut(s) 635
BshNI GGYRCC 1 cut(s) 921
BsiHKAI GWGCWC 2 cut(s) 574, 991
BsiSI CCGG 2 cut(s) 564, 827
BslFI GGGAC 6 cut(s) 123, 302, 329, 364, 596, 933
BslI CCNNNNNNNGG 5 cut(s) 146, 375, 484, 764, 797
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 6 cut(s) 123, 302, 329, 364, 596, 933
BsnI GGCC 1 cut(s) 635
Bsp1286I GDGCHC 4 cut(s) 559, 574, 924, 991
Bsp143I GATC 2 cut(s) 622, 754
BspACI CCGC 2 cut(s) 53, 723
BspANI GGCC 1 cut(s) 635
BspCNI CTCAG 2 cut(s) 174, 921
BspLI GGNNCC 5 cut(s) 379, 380, 756, 923, 949
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 3 cut(s) 630, 749, 762
BspT107I GGYRCC 1 cut(s) 921
BsrDI GCAATG 2 cut(s) 172, 893
BsrI ACTGG 2 cut(s) 505, 977
BssMI GATC 2 cut(s) 622, 754
Bst2UI CCWGG 2 cut(s) 813, 984
Bst4CI ACNGT 2 cut(s) 9, 965
BstC8I GCNNGC 2 cut(s) 329, 570
BstDEI CTNAG 4 cut(s) 161, 296, 776, 908
BstF5I GGATG 1 cut(s) 823
BstKTI GATC 2 cut(s) 625, 757
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 2 cut(s) 622, 754
BstMWI GCNNNNNNNGC 1 cut(s) 904
BstNI CCWGG 2 cut(s) 813, 984
BstNSI RCATGY 2 cut(s) 327, 331
BstPAI GACNNNNGTC 1 cut(s) 966
BstSCI CCNGG 4 cut(s) 563, 811, 826, 982
BstSFI CTRYAG 1 cut(s) 964
BstSLI GKGCMC 1 cut(s) 924
BstV1I GCAGC 2 cut(s) 55, 916
BstV2I GAAGAC 1 cut(s) 971
BstX2I RGATCY 1 cut(s) 754
BstYI RGATCY 1 cut(s) 754
BsuRI GGCC 1 cut(s) 635
BtsCI GGATG 1 cut(s) 823
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 5, 210, 970
BveI ACCTGC 1 cut(s) 929
Cac8I GCNNGC 2 cut(s) 329, 570
Cfr13I GGNCC 4 cut(s) 378, 800, 815, 947
Csp6I GTAC 3 cut(s) 187, 498, 1015
CviAII CATG 8 cut(s) 250, 277, 324, 328, 579, 628, 657, 862
CviQI GTAC 3 cut(s) 187, 498, 1015
DdeI CTNAG 4 cut(s) 161, 296, 776, 908
DpnI GATC 2 cut(s) 624, 756
DpnII GATC 2 cut(s) 622, 754
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 559
Eco47I GGWCC 4 cut(s) 378, 800, 815, 947
EcoO109I RGGNCCY 2 cut(s) 378, 947
EcoRII CCWGG 2 cut(s) 811, 982
EcoT22I ATGCAT 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 559
FaeI CATG 8 cut(s) 253, 280, 327, 331, 582, 631, 660, 865
FaqI GGGAC 6 cut(s) 123, 302, 329, 364, 596, 933
FatI CATG 8 cut(s) 249, 276, 323, 327, 578, 627, 656, 861
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 4 cut(s) 69, 723, 905, 1020
FokI GGATG 1 cut(s) 810
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 4 cut(s) 69, 723, 905, 1020
FspBI CTAG 2 cut(s) 797, 1030
GluI GCNGC 4 cut(s) 69, 723, 905, 1020
HaeIII GGCC 1 cut(s) 635
HapII CCGG 2 cut(s) 564, 827
Hin1II CATG 8 cut(s) 253, 280, 327, 331, 582, 631, 660, 865
HinfI GANTC 5 cut(s) 150, 231, 290, 488, 674
HpaII CCGG 2 cut(s) 564, 827
HphI GGTGA 3 cut(s) 11, 622, 953
Hpy166II GTNNAC 2 cut(s) 103, 523
Hpy188I TCNGA 2 cut(s) 429, 911
Hpy188III TCNNGA 3 cut(s) 242, 478, 992
Hpy8I GTNNAC 2 cut(s) 103, 523
HpyAV CCTTC 5 cut(s) 32, 151, 233, 745, 938
HpyCH4III ACNGT 2 cut(s) 9, 965
HpyCH4V TGCA 4 cut(s) 327, 341, 647, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 904
HpyF3I CTNAG 4 cut(s) 161, 296, 776, 908
Hsp92II CATG 8 cut(s) 253, 280, 327, 331, 582, 631, 660, 865
KflI GGGWCCC 1 cut(s) 378
Kzo9I GATC 2 cut(s) 622, 754
LmnI GCTCC 1 cut(s) 994
Lsp1109I GCAGC 2 cut(s) 55, 916
MaeI CTAG 2 cut(s) 797, 1030
MaeIII GTNAC 2 cut(s) 218, 968
MalI GATC 2 cut(s) 624, 756
MboI GATC 2 cut(s) 622, 754
MboII GAAGA 2 cut(s) 17, 971
MfeI CAATTG 1 cut(s) 154
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 4 cut(s) 559, 574, 924, 991
MluCI AATT 5 cut(s) 154, 349, 482, 693, 792
MlyI GAGTC 2 cut(s) 284, 482
MnlI CCTC 8 cut(s) 39, 170, 200, 257, 392, 394, 625, 937
Mph1103I ATGCAT 1 cut(s) 329
MseI TTAA 3 cut(s) 365, 650, 854
MslI CAYNNNNRTG 3 cut(s) 281, 322, 735
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 2 cut(s) 564, 827
MspR9I CCNGG 4 cut(s) 565, 813, 828, 984
MunI CAATTG 1 cut(s) 154
MvaI CCWGG 2 cut(s) 813, 984
MwoI GCNNNNNNNGC 1 cut(s) 904
NciI CCSGG 2 cut(s) 565, 828
NdeII GATC 2 cut(s) 622, 754
NlaIII CATG 8 cut(s) 253, 280, 327, 331, 582, 631, 660, 865
NlaIV GGNNCC 5 cut(s) 379, 380, 756, 923, 949
NmuCI GTSAC 2 cut(s) 218, 968
NsiI ATGCAT 1 cut(s) 329
NspI RCATGY 2 cut(s) 327, 331
PaeI GCATGC 1 cut(s) 331
PaqCI CACCTGC 1 cut(s) 929
PceI AGGCCT 1 cut(s) 635
PfeI GAWTC 3 cut(s) 150, 231, 674
PflFI GACNNNGTC 1 cut(s) 819
PfoI TCCNGGA 2 cut(s) 811, 826
PkrI GCNGC 4 cut(s) 70, 724, 906, 1021
PleI GAGTC 2 cut(s) 284, 482
PpsI GAGTC 2 cut(s) 284, 482
PpuMI RGGWCCY 2 cut(s) 378, 947
PshAI GACNNNNGTC 1 cut(s) 966
Psp5II RGGWCCY 2 cut(s) 378, 947
Psp6I CCWGG 2 cut(s) 811, 982
PspGI CCWGG 2 cut(s) 811, 982
PspN4I GGNNCC 5 cut(s) 379, 380, 756, 923, 949
PspPI GGNCC 4 cut(s) 378, 800, 815, 947
PspPPI RGGWCCY 2 cut(s) 378, 947
PsrI GAACNNNNNNTAC 2 cut(s) 711, 743
PsuI RGATCY 1 cut(s) 754
PsyI GACNNNGTC 1 cut(s) 819
RsaI GTAC 3 cut(s) 188, 499, 1016
RsaNI GTAC 3 cut(s) 187, 498, 1015
RseI CAYNNNNRTG 3 cut(s) 281, 322, 735
SaqAI TTAA 3 cut(s) 365, 650, 854
SatI GCNGC 4 cut(s) 69, 723, 905, 1020
Sau3AI GATC 2 cut(s) 622, 754
Sau96I GGNCC 4 cut(s) 378, 800, 815, 947
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 2 cut(s) 284, 482
ScrFI CCNGG 4 cut(s) 565, 813, 828, 984
SduI GDGCHC 4 cut(s) 559, 574, 924, 991
SfcI CTRYAG 1 cut(s) 964
SinI GGWCC 4 cut(s) 378, 800, 815, 947
SmiMI CAYNNNNRTG 3 cut(s) 281, 322, 735
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SphI GCATGC 1 cut(s) 331
Sse9I AATT 5 cut(s) 154, 349, 482, 693, 792
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 2 cut(s) 53, 723
SspMI CTAG 2 cut(s) 797, 1030
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 4 cut(s) 563, 811, 826, 982
TaaI ACNGT 2 cut(s) 9, 965
TaqI TCGA 1 cut(s) 416
TasI AATT 5 cut(s) 154, 349, 482, 693, 792
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 3 cut(s) 150, 231, 674
Tru1I TTAA 3 cut(s) 365, 650, 854
Tru9I TTAA 3 cut(s) 365, 650, 854
TscAI CASTG 3 cut(s) 12, 217, 977
TseFI GTSAC 2 cut(s) 218, 968
TseI GCWGC 3 cut(s) 68, 904, 1019
Tsp45I GTSAC 2 cut(s) 218, 968
TspDTI ATGAA 6 cut(s) 133, 238, 474, 536, 719, 1020
TspRI CASTG 3 cut(s) 12, 217, 977
Tth111I GACNNNGTC 1 cut(s) 819
VpaK11BI GGWCC 4 cut(s) 378, 800, 815, 947
XceI RCATGY 2 cut(s) 327, 331
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 2 cut(s) 797, 1030
ZrmI AGTACT 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.