Rmu_sc0001608.1_g000004

Protein trichome birefringence-like 42

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001608.1
OG0017480
Physical Location & Seq
Reverse (-)
7845 .. 9897
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001608.1_g000004.1.cds

Sequence Viewer

Length: 765 bp
atggcattctcgtgctttcaccttcttcctctagtactactgccattgacactaaaccaagtagtgaatgggaatccagtttttgatgatggagattcagttctcgattatgcagaaggagctggagtactgatgaagcagtcatcacatggctgcaatttttttcaagggagttgggttgctgacgatgaatacccactttacaatgcttcaagctgtccattcattggattcaattgcataaagaatggtagacctgataaacagtacttcaaatatagatggaagcctactggttgtgaccttccaagatggaactactttcaagtgggacaaaagatggtgaaagaaatggatcacatggaggcctacaagattgcattaacaacttgggctaaatgggttgattccaacattgatttttcaaagaccaaagtcttttttcaaggggttgctgcagttcatattgatggaaaggaatggaaggaaccaaaagcaagaagttgcagaggacaaacaaaaccactgctgggagctagttatccaagcccaactcatccaggagaagcaattgtgaagagtgtattgagtacagtggcaaagccaatttacttgcttgacattacattgctgacacagctaagaaaagatgggcacccttcaatttatgccggccttggtcccaaatttgtggactgcagtcactggtgtcttcctggtgctcctgatgcttggaatgaacttctgtatgcagctttgctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

254

Amino Acids

28.43

Weight (kDa)

7.57

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78710 AT1G78710
malus_domestica MD11G1269200.v1.1
prunus_persica Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0029581
rosa_laevigata RLG00000033182
rosa_multiflora Rmu_sc0001608.1_g000004
rosa_roxburghii Rroxscaffold_1G00050350
rosa_samantha Rh5AG207400 Rh5CG228000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 654
AccB7I CCANNNNNTGG 1 cut(s) 227
AccI GTMKAC 1 cut(s) 253
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 686
AfaI GTAC 4 cut(s) 36, 129, 269, 592
AfiI CCNNNNNNNGG 2 cut(s) 227, 530
AgsI TTSAA 8 cut(s) 167, 213, 235, 274, 326, 426, 446, 663
AjnI CCWGG 2 cut(s) 559, 715
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 5 cut(s) 122, 216, 536, 640, 755
AluI AGCT 5 cut(s) 122, 216, 536, 640, 755
Alw21I GWGCWC 1 cut(s) 724
AlwI GGATC 1 cut(s) 363
AlwNI CAGNNNCTG 1 cut(s) 705
AoxI GGCC 2 cut(s) 366, 673
ApeKI GCWGC 3 cut(s) 153, 455, 752
ApoI RAATTY 1 cut(s) 686
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 11, 355
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 657
BanI GGYRCC 1 cut(s) 654
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 2 cut(s) 140, 442
BccI CCATC 6 cut(s) 83, 276, 306, 334, 464, 644
BciT130I CCWGG 2 cut(s) 561, 717
BfaI CTAG 3 cut(s) 32, 537, 763
BfmI CTRYAG 2 cut(s) 456, 697
BisI GCNGC 3 cut(s) 154, 456, 753
BlsI GCNGC 3 cut(s) 155, 457, 754
BmcAI AGTACT 3 cut(s) 36, 129, 269
Bme1390I CCNGG 2 cut(s) 561, 717
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 3 cut(s) 489, 656, 682
BmrFI CCNGG 2 cut(s) 561, 717
BmsI GCATC 1 cut(s) 718
BoxI GACNNNNGTC 2 cut(s) 434, 699
BpiI GAAGAC 1 cut(s) 704
BpmI CTGGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 676
BsaXI ACNNNNNCTCC 4 cut(s) 84, 111, 114, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 530
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 3 cut(s) 77, 298, 710
Bse3DI GCAATG 1 cut(s) 626
BseBI CCWGG 2 cut(s) 561, 717
BseDI CCNNGG 1 cut(s) 676
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 2 cut(s) 227, 530
BseMI GCAATG 1 cut(s) 626
BseNI ACTGG 3 cut(s) 77, 298, 710
BseSI GKGCMC 1 cut(s) 657
BseXI GCAGC 2 cut(s) 140, 442
BseYI CCCAGC 1 cut(s) 529
BshFI GGCC 2 cut(s) 368, 675
BshNI GGYRCC 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 724
BsiSI CCGG 1 cut(s) 672
BslFI GGGAC 2 cut(s) 345, 666
BslI CCNNNNNNNGG 2 cut(s) 227, 530
BsmFI GGGAC 2 cut(s) 345, 666
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 2 cut(s) 368, 675
Bsp1286I GDGCHC 2 cut(s) 657, 724
Bsp143I GATC 1 cut(s) 355
BspANI GGCC 2 cut(s) 368, 675
BspLI GGNNCC 3 cut(s) 489, 656, 682
BspMAI CTGCAG 2 cut(s) 460, 701
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 3 cut(s) 77, 298, 710
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 1 cut(s) 355
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 676
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 2 cut(s) 561, 717
Bst4CI ACNGT 2 cut(s) 267, 595
Bst6I CTCTTC 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 556
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 3 cut(s) 119, 637, 728
BstNI CCWGG 2 cut(s) 561, 717
BstPAI GACNNNNGTC 2 cut(s) 434, 699
BstSCI CCNGG 2 cut(s) 559, 715
BstSFI CTRYAG 2 cut(s) 456, 697
BstSLI GKGCMC 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 140, 442
BstV2I GAAGAC 1 cut(s) 704
BstXI CCANNNNNNTGG 1 cut(s) 691
BsuRI GGCC 2 cut(s) 368, 675
BtsCI GGATG 1 cut(s) 556
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 3 cut(s) 524, 600, 703
Cac8I GCNNGC 1 cut(s) 673
CaiI CAGNNNCTG 1 cut(s) 705
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 1 cut(s) 680
Csp6I GTAC 4 cut(s) 35, 128, 268, 591
CviAII CATG 2 cut(s) 149, 361
CviQI GTAC 4 cut(s) 35, 128, 268, 591
DdeI CTNAG 1 cut(s) 641
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 676
Eco147I AGGCCT 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 559, 715
EcoT14I CCWWGG 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 2 cut(s) 152, 364
FaiI YATR 8 cut(s) 111, 150, 242, 279, 362, 465, 669, 750
FaqI GGGAC 2 cut(s) 345, 666
FatI CATG 2 cut(s) 148, 360
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 154, 456, 753
FokI GGATG 1 cut(s) 543
Fsp4HI GCNGC 3 cut(s) 154, 456, 753
FspBI CTAG 3 cut(s) 32, 537, 763
GluI GCNGC 3 cut(s) 154, 456, 753
GsaI CCCAGC 1 cut(s) 533
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 2 cut(s) 368, 675
HapII CCGG 1 cut(s) 672
Hin1II CATG 2 cut(s) 152, 364
HinfI GANTC 4 cut(s) 73, 95, 231, 407
HpaII CCGG 1 cut(s) 672
HphI GGTGA 2 cut(s) 11, 355
Hpy166II GTNNAC 2 cut(s) 254, 694
Hpy188III TCNNGA 2 cut(s) 104, 725
Hpy8I GTNNAC 2 cut(s) 254, 694
HpyAV CCTTC 5 cut(s) 32, 110, 314, 478, 669
HpyCH4III ACNGT 2 cut(s) 267, 595
HpyCH4V TGCA 8 cut(s) 113, 156, 240, 380, 458, 507, 699, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 637, 728
HpyF3I CTNAG 1 cut(s) 641
Hsp92II CATG 2 cut(s) 152, 364
KroI GCCGGC 1 cut(s) 671
KroNI GCCGGC 1 cut(s) 673
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 3 cut(s) 119, 533, 727
Lsp1109I GCAGC 2 cut(s) 140, 442
LweI GCATC 1 cut(s) 718
MaeI CTAG 3 cut(s) 32, 537, 763
MaeIII GTNAC 2 cut(s) 299, 701
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 3 cut(s) 17, 589, 704
MfeI CAATTG 2 cut(s) 235, 570
MhlI GDGCHC 2 cut(s) 657, 724
MluCI AATT 6 cut(s) 157, 235, 570, 606, 663, 686
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 3 cut(s) 39, 358, 503
MroNI GCCGGC 1 cut(s) 671
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 2 cut(s) 10, 468
MspI CCGG 1 cut(s) 672
MspR9I CCNGG 2 cut(s) 561, 717
MunI CAATTG 2 cut(s) 235, 570
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 2 cut(s) 561, 717
MwoI GCNNNNNNNGC 3 cut(s) 119, 637, 728
NaeI GCCGGC 1 cut(s) 673
NdeII GATC 1 cut(s) 355
NgoMIV GCCGGC 1 cut(s) 671
NlaIII CATG 2 cut(s) 152, 364
NlaIV GGNNCC 3 cut(s) 489, 656, 682
NmuCI GTSAC 2 cut(s) 299, 701
PceI AGGCCT 1 cut(s) 368
PctI GAATGC 1 cut(s) 5
PdiI GCCGGC 1 cut(s) 673
PfeI GAWTC 4 cut(s) 73, 95, 231, 407
PflMI CCANNNNNTGG 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 3 cut(s) 155, 457, 754
PshAI GACNNNNGTC 2 cut(s) 434, 699
Psp6I CCWGG 2 cut(s) 559, 715
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 2 cut(s) 559, 715
PspN4I GGNNCC 3 cut(s) 489, 656, 682
PspPI GGNCC 1 cut(s) 680
PstI CTGCAG 2 cut(s) 460, 701
PstNI CAGNNNCTG 1 cut(s) 705
RsaI GTAC 4 cut(s) 36, 129, 269, 592
RsaNI GTAC 4 cut(s) 35, 128, 268, 591
RseI CAYNNNNRTG 2 cut(s) 10, 468
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 3 cut(s) 154, 456, 753
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 680
ScaI AGTACT 3 cut(s) 36, 129, 269
ScrFI CCNGG 2 cut(s) 561, 717
SduI GDGCHC 2 cut(s) 657, 724
SetI ASST 8 cut(s) 24, 124, 218, 259, 306, 538, 642, 757
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 2 cut(s) 456, 697
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 2 cut(s) 10, 468
Sse9I AATT 6 cut(s) 157, 235, 570, 606, 663, 686
SseBI AGGCCT 1 cut(s) 368
SspMI CTAG 3 cut(s) 32, 537, 763
StuI AGGCCT 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 559, 715
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 2 cut(s) 267, 595
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 157, 235, 570, 606, 663, 686
TatI WGTACW 4 cut(s) 34, 127, 267, 590
TfiI GAWTC 4 cut(s) 73, 95, 231, 407
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 3 cut(s) 531, 600, 710
TseFI GTSAC 2 cut(s) 299, 701
TseI GCWGC 3 cut(s) 153, 455, 752
Tsp45I GTSAC 2 cut(s) 299, 701
TspDTI ATGAA 5 cut(s) 149, 204, 214, 452, 753
TspRI CASTG 3 cut(s) 531, 600, 710
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 3 cut(s) 32, 537, 763
ZrmI AGTACT 3 cut(s) 36, 129, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.