Prupe.4G157100_v2.0.a1

Protein trichome birefringence-like 42

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017480
Physical Location & Seq
Reverse (-)
8990754 .. 8992506
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G157100.1

Sequence Viewer

Length: 756 bp
ATGTTTGTGGGGGACTCACTAAGCAACAATATGTGGCAGTCACTGACATGCATGTTACATGTTGCGGTCCCAAACTCTAAATACAACTTAACCCAGAAAGGGCTGCTCTCCACATTTTACCTTGAGGAATATCAAGTGTCAATTATGTTTCTGAAAAATGGATTCTTAGTGGACTTGGCTTATGAGAAAATAGGCAAAGTCCTAAAACTGAACTCCATCTCCACTGGCAACCAATGGAAAGGAGTAGACACGTTGATCTTCAACACATTTCACTGGTGGAATCACAGTGGGCGCTATCAAACATGGGACTACTTTCAAGTCGGGGACAAGATAGTGAAAGAAATGGATCATATGGAGGCCTACAAGATTGCATTAACAACTTGGGCTAAATGGGTTGATTCCAACATTGATTTTTCAAAGACCAAAGTCTTTTTCCAAGGAGTTGCTGCAGTTCATCTTGATGGAAAGGAATGGAAGGACCCAAAAGCAAATGGGTGCATAGGGCAAACCCAACCAGTTCTAGGGCCAACTTATCCAGGCCCAAGCCATCCAGGAGAAGCTATTGTAAAAAGTGTCTTGAGCATCATTGAAAATCCTGTGTACTTACTGGACATTACTTTGCTCACCCAGCTGAGAAAAGATGGCCACCCCTCCATTTATGCAGGCCAAGGTCCCAAATTTGTTGACTGTAGCCATTGGTGTCTTCCTGGTGCTCCTGATACTTGGAATGAACTTCTATATGCAGCTTTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

252

Amino Acids

28.4

Weight (kDa)

6.43

Isoelectric Point (pI)

13.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78710 AT1G78710
malus_domestica MD11G1269200.v1.1
prunus_persica Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0029581
rosa_laevigata RLG00000033182
rosa_multiflora Rmu_sc0001608.1_g000004
rosa_roxburghii Rroxscaffold_1G00050350
rosa_samantha Rh5AG207400 Rh5CG228000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 677
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 2 cut(s) 99, 521
AflIII ACRYGT 2 cut(s) 58, 249
AgsI TTSAA 4 cut(s) 262, 317, 417, 590
AjnI CCWGG 3 cut(s) 535, 550, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 560, 631, 746
AluI AGCT 3 cut(s) 560, 631, 746
Alw21I GWGCWC 1 cut(s) 715
AlwI GGATC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 5 cut(s) 357, 524, 538, 643, 664
ApeKI GCWGC 3 cut(s) 103, 446, 743
ApoI RAATTY 1 cut(s) 677
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 5 cut(s) 67, 478, 524, 539, 671
AsuHPI GGTGA 1 cut(s) 616
AvaII GGWCC 3 cut(s) 67, 478, 671
BalI TGGCCA 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 695
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 2 cut(s) 90, 433
BccI CCATC 4 cut(s) 224, 455, 555, 635
BciT130I CCWGG 3 cut(s) 537, 552, 708
BfaI CTAG 2 cut(s) 521, 754
BfmI CTRYAG 2 cut(s) 447, 688
BfoI RGCGCY 1 cut(s) 295
BisI GCNGC 3 cut(s) 104, 447, 744
BlsI GCNGC 3 cut(s) 105, 448, 745
Bme1390I CCNGG 3 cut(s) 537, 552, 708
Bme18I GGWCC 3 cut(s) 67, 478, 671
BmgT120I GGNCC 5 cut(s) 67, 478, 524, 539, 671
BmiI GGNNCC 3 cut(s) 69, 480, 673
BmrFI CCNGG 3 cut(s) 537, 552, 708
BmsI GCATC 1 cut(s) 591
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 695
BpuEI CTTGAG 2 cut(s) 143, 598
BsaJI CCNNGG 2 cut(s) 436, 667
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 521
Bse1I ACTGG 4 cut(s) 229, 278, 515, 612
BseBI CCWGG 3 cut(s) 537, 552, 708
BseDI CCNNGG 2 cut(s) 436, 667
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 2 cut(s) 99, 521
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 4 cut(s) 229, 278, 515, 612
BseXI GCAGC 2 cut(s) 90, 433
BseYI CCCAGC 1 cut(s) 627
BshFI GGCC 5 cut(s) 359, 526, 540, 645, 666
BsiHKAI GWGCWC 1 cut(s) 715
BslFI GGGAC 5 cut(s) 26, 53, 320, 338, 657
BslI CCNNNNNNNGG 2 cut(s) 99, 521
BsmFI GGGAC 5 cut(s) 26, 53, 320, 338, 657
BsnI GGCC 5 cut(s) 359, 526, 540, 645, 666
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 2 cut(s) 255, 346
BspACI CCGC 1 cut(s) 65
BspANI GGCC 5 cut(s) 359, 526, 540, 645, 666
BspCNI CTCAG 1 cut(s) 624
BspLI GGNNCC 3 cut(s) 69, 480, 673
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 354
BsrI ACTGG 4 cut(s) 229, 278, 515, 612
BssECI CCNNGG 2 cut(s) 436, 667
BssMI GATC 2 cut(s) 255, 346
BssT1I CCWWGG 2 cut(s) 436, 667
Bst2UI CCWGG 3 cut(s) 537, 552, 708
Bst4CI ACNGT 2 cut(s) 287, 689
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 3 cut(s) 20, 166, 632
BstF5I GGATG 1 cut(s) 547
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 2 cut(s) 258, 349
BstMBI GATC 2 cut(s) 255, 346
BstMWI GCNNNNNNNGC 1 cut(s) 628
BstNI CCWGG 3 cut(s) 537, 552, 708
BstNSI RCATGY 3 cut(s) 51, 55, 62
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 3 cut(s) 535, 550, 706
BstSFI CTRYAG 2 cut(s) 447, 688
BstV1I GCAGC 2 cut(s) 90, 433
BstV2I GAAGAC 1 cut(s) 695
BsuRI GGCC 5 cut(s) 359, 526, 540, 645, 666
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 4 cut(s) 41, 222, 271, 292
Cac8I GCNNGC 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 5 cut(s) 67, 478, 524, 539, 671
Csp6I GTAC 1 cut(s) 601
CviAII CATG 4 cut(s) 48, 52, 59, 303
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 20, 166, 632
DpnI GATC 2 cut(s) 257, 348
DpnII GATC 2 cut(s) 255, 346
EaeI YGGCCR 1 cut(s) 643
Eco130I CCWWGG 2 cut(s) 436, 667
Eco147I AGGCCT 1 cut(s) 359
Eco47I GGWCC 3 cut(s) 67, 478, 671
EcoO109I RGGNCCY 2 cut(s) 478, 671
EcoRII CCWGG 3 cut(s) 535, 550, 706
EcoT14I CCWWGG 2 cut(s) 436, 667
EcoT22I ATGCAT 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 436, 667
FaeI CATG 4 cut(s) 51, 55, 62, 306
FaqI GGGAC 5 cut(s) 26, 53, 320, 338, 657
FatI CATG 4 cut(s) 47, 51, 58, 302
FauNDI CATATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 104, 447, 744
FokI GGATG 1 cut(s) 534
Fsp4HI GCNGC 3 cut(s) 104, 447, 744
FspBI CTAG 2 cut(s) 521, 754
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 104, 447, 744
GsaI CCCAGC 1 cut(s) 631
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 5 cut(s) 359, 526, 540, 645, 666
HhaI GCGC 1 cut(s) 294
Hin1II CATG 4 cut(s) 51, 55, 62, 306
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HinfI GANTC 4 cut(s) 14, 162, 280, 398
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 4 cut(s) 172, 247, 601, 685
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 3 cut(s) 458, 577, 716
Hpy8I GTNNAC 4 cut(s) 172, 247, 601, 685
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 2 cut(s) 287, 689
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 6 cut(s) 51, 371, 449, 498, 662, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 628
HpyF3I CTNAG 3 cut(s) 20, 166, 632
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 4 cut(s) 51, 55, 62, 306
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 255, 346
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 2 cut(s) 90, 433
LweI GCATC 1 cut(s) 591
MaeI CTAG 2 cut(s) 521, 754
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 39, 54
MalI GATC 2 cut(s) 257, 348
MboI GATC 2 cut(s) 255, 346
MboII GAAGA 2 cut(s) 250, 695
MhlI GDGCHC 1 cut(s) 715
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 2 cut(s) 141, 677
MluNI TGGCCA 1 cut(s) 645
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 3 cut(s) 118, 349, 661
Mox20I TGGCCA 1 cut(s) 645
Mph1103I ATGCAT 1 cut(s) 53
MscI TGGCCA 1 cut(s) 645
MseI TTAA 2 cut(s) 89, 374
MslI CAYNNNNRTG 2 cut(s) 46, 459
Msp20I TGGCCA 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 631
MspR9I CCNGG 3 cut(s) 537, 552, 708
MvaI CCWGG 3 cut(s) 537, 552, 708
MwoI GCNNNNNNNGC 1 cut(s) 628
NdeI CATATG 1 cut(s) 351
NdeII GATC 2 cut(s) 255, 346
NlaIII CATG 4 cut(s) 51, 55, 62, 306
NlaIV GGNNCC 3 cut(s) 69, 480, 673
NmuCI GTSAC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 3 cut(s) 51, 55, 62
PceI AGGCCT 1 cut(s) 359
PciI ACATGT 1 cut(s) 58
PfeI GAWTC 3 cut(s) 162, 280, 398
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 3 cut(s) 105, 448, 745
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PpuMI RGGWCCY 2 cut(s) 478, 671
PscI ACATGT 1 cut(s) 58
PshAI GACNNNNGTC 1 cut(s) 425
Psp5II RGGWCCY 2 cut(s) 478, 671
Psp6I CCWGG 3 cut(s) 535, 550, 706
PspFI CCCAGC 1 cut(s) 627
PspGI CCWGG 3 cut(s) 535, 550, 706
PspN4I GGNNCC 3 cut(s) 69, 480, 673
PspPI GGNCC 5 cut(s) 67, 478, 524, 539, 671
PspPPI RGGWCCY 2 cut(s) 478, 671
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 2 cut(s) 46, 459
SaqAI TTAA 2 cut(s) 89, 374
SatI GCNGC 3 cut(s) 104, 447, 744
Sau3AI GATC 2 cut(s) 255, 346
Sau96I GGNCC 5 cut(s) 67, 478, 524, 539, 671
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 3 cut(s) 537, 552, 708
SduI GDGCHC 1 cut(s) 715
SetI ASST 6 cut(s) 123, 254, 562, 633, 673, 748
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 2 cut(s) 447, 688
SinI GGWCC 3 cut(s) 67, 478, 671
SmiMI CAYNNNNRTG 2 cut(s) 46, 459
SmlI CTYRAG 2 cut(s) 122, 577
SmoI CTYRAG 2 cut(s) 122, 577
Sse9I AATT 2 cut(s) 141, 677
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 1 cut(s) 65
SspMI CTAG 2 cut(s) 521, 754
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 535, 550, 706
StyI CCWWGG 2 cut(s) 436, 667
TaaI ACNGT 2 cut(s) 287, 689
TaiI ACGT 1 cut(s) 254
TasI AATT 2 cut(s) 141, 677
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 3 cut(s) 162, 280, 398
Tru1I TTAA 2 cut(s) 89, 374
Tru9I TTAA 2 cut(s) 89, 374
TscAI CASTG 4 cut(s) 48, 229, 278, 292
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 3 cut(s) 103, 446, 743
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 443, 744
TspRI CASTG 4 cut(s) 48, 229, 278, 292
VpaK11BI GGWCC 3 cut(s) 67, 478, 671
XapI RAATTY 1 cut(s) 677
XceI RCATGY 3 cut(s) 51, 55, 62
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 521, 754
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.