RLG00000033182

Protein trichome birefringence-like 42

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017480
Physical Location & Seq
Reverse (-)
24140469 .. 24141668
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033182

Sequence Viewer

Length: 756 bp
ATGTTTGTAGGAGACTCCCTAAGTAACAATATGTGGCAGTCCCTTACATGCATGATACATGTTGCAGCCCCAAACTCCAATTACACCTTAACCCAAGCAGGGTTGCTTTCCACATTTTACCTCAAGGAATATGCACTGTCGGTTATGTTTTTGAAAAATGGGTTCATAGTGGACTTGGCTTATGAAAAAATAGGCAAAGTCCTAAAACTTGACTCCATCAGCACCGGCAACCTATGGAAAGGAGTAGACATGTTGATCTTCACCACATATCACTGGTGGACTCATTCCGGCCATTCTCAGACATGGGACTACTTTCAAGTGGGACAAAAGACGGTGAAAGAAATGGATCACATGGAGGCATACAAGATTGCGTTAACAACTTGGCCTAAATGGGTTGATTCCAACATTGATTTTTCAAAGACCAAAGTCTTTTTTCAAGGGGTTGCTGCAGTTCATATTGATGGAAAGGACTGGAAAGAACCAAAAGCAAGAAGTTGCAGAGGACAAACCCAACCACTGCTGGGAACTAGTTATCCAGGCCCAACTCATCCAGGAGAAGCAATTGTGAAGAGTGTATTGAGTACAGTGGCAAAATCAATTTACTTGCTTGACATTACATTGCTCACACAGCTAAGAAAAGATGGACACCCTTCAATTTATGCCGGCCTTGGTCCCAAATTTGTGGACTGCAGTCACTGGTGTCTTCCTGGTGCTCCTGATGCTTGGAATGAACTTCTGTATGCAGCTTTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

252

Amino Acids

28.19

Weight (kDa)

7.7

Isoelectric Point (pI)

20.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 1 - 248 3.4e-77 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78710 AT1G78710
malus_domestica MD11G1269200.v1.1
prunus_persica Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0029581
rosa_laevigata RLG00000033182
rosa_multiflora Rmu_sc0001608.1_g000004
rosa_roxburghii Rroxscaffold_1G00050350
rosa_samantha Rh5AG207400 Rh5CG228000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 677
AfaI GTAC 1 cut(s) 583
AfiI CCNNNNNNNGG 2 cut(s) 99, 521
AflIII ACRYGT 2 cut(s) 58, 249
AgsI TTSAA 5 cut(s) 154, 317, 417, 437, 654
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 3 cut(s) 535, 550, 706
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
AluBI AGCT 2 cut(s) 631, 746
AluI AGCT 2 cut(s) 631, 746
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 1 cut(s) 6
AlwI GGATC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 696
AoxI GGCC 4 cut(s) 289, 383, 538, 664
ApeKI GCWGC 3 cut(s) 65, 446, 743
ApoI RAATTY 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 539, 671
AsuHPI GGTGA 2 cut(s) 253, 346
AvaII GGWCC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 695
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 2 cut(s) 77, 433
BccI CCATC 3 cut(s) 224, 455, 635
BciT130I CCWGG 3 cut(s) 537, 552, 708
BcoDI GTCTC 1 cut(s) 6
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 2 cut(s) 528, 754
BfmI CTRYAG 2 cut(s) 447, 688
BisI GCNGC 3 cut(s) 66, 447, 744
BlsI GCNGC 3 cut(s) 67, 448, 745
Bme1390I CCNGG 3 cut(s) 537, 552, 708
Bme18I GGWCC 1 cut(s) 671
BmgT120I GGNCC 2 cut(s) 539, 671
BmiI GGNNCC 1 cut(s) 673
BmrFI CCNGG 3 cut(s) 537, 552, 708
BmsI GCATC 1 cut(s) 709
BoxI GACNNNNGTC 2 cut(s) 425, 690
BpiI GAAGAC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 667
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 521
Bse118I RCCGGY 2 cut(s) 224, 662
Bse1I ACTGG 3 cut(s) 278, 476, 701
Bse3DI GCAATG 1 cut(s) 617
BseBI CCWGG 3 cut(s) 537, 552, 708
BseDI CCNNGG 1 cut(s) 667
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 2 cut(s) 99, 521
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 3 cut(s) 278, 476, 701
BseXI GCAGC 2 cut(s) 77, 433
BseYI CCCAGC 1 cut(s) 520
BshFI GGCC 4 cut(s) 291, 385, 540, 666
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 3 cut(s) 225, 288, 663
BslFI GGGAC 4 cut(s) 25, 320, 336, 657
BslI CCNNNNNNNGG 2 cut(s) 99, 521
BsmAI GTCTC 1 cut(s) 6
BsmFI GGGAC 4 cut(s) 25, 320, 336, 657
BsnI GGCC 4 cut(s) 291, 385, 540, 666
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 2 cut(s) 255, 346
BspANI GGCC 4 cut(s) 291, 385, 540, 666
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 673
BspMAI CTGCAG 2 cut(s) 451, 692
BspPI GGATC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 617
BsrFI RCCGGY 2 cut(s) 224, 662
BsrI ACTGG 3 cut(s) 278, 476, 701
BssAI RCCGGY 2 cut(s) 224, 662
BssECI CCNNGG 1 cut(s) 667
BssMI GATC 2 cut(s) 255, 346
BssT1I CCWWGG 1 cut(s) 667
Bst2UI CCWGG 3 cut(s) 537, 552, 708
Bst4CI ACNGT 3 cut(s) 138, 334, 586
Bst6I CTCTTC 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 3 cut(s) 20, 297, 632
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 2 cut(s) 258, 349
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 2 cut(s) 255, 346
BstMWI GCNNNNNNNGC 2 cut(s) 628, 719
BstNI CCWGG 3 cut(s) 537, 552, 708
BstNSI RCATGY 3 cut(s) 51, 62, 253
BstPAI GACNNNNGTC 2 cut(s) 425, 690
BstSCI CCNGG 3 cut(s) 535, 550, 706
BstSFI CTRYAG 2 cut(s) 447, 688
BstV1I GCAGC 2 cut(s) 77, 433
BstV2I GAAGAC 1 cut(s) 695
BstXI CCANNNNNNTGG 1 cut(s) 682
BsuRI GGCC 4 cut(s) 291, 385, 540, 666
BtsCI GGATG 1 cut(s) 547
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 5 cut(s) 134, 271, 515, 591, 694
Cac8I GCNNGC 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 696
Cfr10I RCCGGY 2 cut(s) 224, 662
Cfr13I GGNCC 2 cut(s) 539, 671
Csp6I GTAC 1 cut(s) 582
CviAII CATG 6 cut(s) 48, 52, 59, 250, 303, 352
CviJI RGCY 8 cut(s) 68, 179, 291, 385, 540, 631, 666, 746
CviKI_1 RGCY 8 cut(s) 68, 179, 291, 385, 540, 631, 666, 746
CviQI GTAC 1 cut(s) 582
DdeI CTNAG 3 cut(s) 20, 297, 632
DpnI GATC 2 cut(s) 257, 348
DpnII GATC 2 cut(s) 255, 346
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 671
EcoRII CCWGG 3 cut(s) 535, 550, 706
EcoT14I CCWWGG 1 cut(s) 667
EcoT22I ATGCAT 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 6 cut(s) 51, 55, 62, 253, 306, 355
FaqI GGGAC 4 cut(s) 25, 320, 336, 657
FatI CATG 6 cut(s) 47, 51, 58, 249, 302, 351
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 66, 447, 744
FokI GGATG 1 cut(s) 534
Fsp4HI GCNGC 3 cut(s) 66, 447, 744
FspBI CTAG 2 cut(s) 528, 754
GluI GCNGC 3 cut(s) 66, 447, 744
GsaI CCCAGC 1 cut(s) 524
HaeIII GGCC 4 cut(s) 291, 385, 540, 666
HapII CCGG 3 cut(s) 225, 288, 663
Hin1II CATG 6 cut(s) 51, 55, 62, 253, 306, 355
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HinfI GANTC 4 cut(s) 14, 212, 280, 398
HpaI GTTAAC 1 cut(s) 375
HpaII CCGG 3 cut(s) 225, 288, 663
HphI GGTGA 2 cut(s) 253, 346
Hpy166II GTNNAC 5 cut(s) 172, 247, 279, 375, 685
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 716
Hpy8I GTNNAC 5 cut(s) 172, 247, 279, 375, 685
HpyAV CCTTC 1 cut(s) 660
HpyCH4III ACNGT 3 cut(s) 138, 334, 586
HpyCH4V TGCA 7 cut(s) 51, 65, 134, 449, 498, 690, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 628, 719
HpyF3I CTNAG 3 cut(s) 20, 297, 632
Hsp92II CATG 6 cut(s) 51, 55, 62, 253, 306, 355
KroI GCCGGC 1 cut(s) 662
KroNI GCCGGC 1 cut(s) 664
KspAI GTTAAC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 255, 346
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 2 cut(s) 77, 433
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 528, 754
MaeIII GTNAC 2 cut(s) 23, 692
MalI GATC 2 cut(s) 257, 348
MboI GATC 2 cut(s) 255, 346
MboII GAAGA 3 cut(s) 250, 580, 695
MfeI CAATTG 1 cut(s) 561
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 5 cut(s) 79, 561, 597, 654, 677
MlyI GAGTC 3 cut(s) 8, 206, 274
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 3 cut(s) 131, 349, 494
Mph1103I ATGCAT 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 662
MseI TTAA 2 cut(s) 89, 374
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 3 cut(s) 225, 288, 663
MspR9I CCNGG 3 cut(s) 537, 552, 708
MunI CAATTG 1 cut(s) 561
MvaI CCWGG 3 cut(s) 537, 552, 708
MwoI GCNNNNNNNGC 2 cut(s) 628, 719
NaeI GCCGGC 1 cut(s) 664
NdeII GATC 2 cut(s) 255, 346
NgoMIV GCCGGC 1 cut(s) 662
NlaIII CATG 6 cut(s) 51, 55, 62, 253, 306, 355
NlaIV GGNNCC 1 cut(s) 673
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 3 cut(s) 51, 62, 253
PciI ACATGT 2 cut(s) 58, 249
PdiI GCCGGC 1 cut(s) 664
PfeI GAWTC 1 cut(s) 398
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 3 cut(s) 67, 448, 745
PleI GAGTC 3 cut(s) 8, 206, 274
PpsI GAGTC 3 cut(s) 8, 206, 274
PscI ACATGT 2 cut(s) 58, 249
PshAI GACNNNNGTC 2 cut(s) 425, 690
Psp6I CCWGG 3 cut(s) 535, 550, 706
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 3 cut(s) 535, 550, 706
PspN4I GGNNCC 1 cut(s) 673
PspPI GGNCC 2 cut(s) 539, 671
PstI CTGCAG 2 cut(s) 451, 692
PstNI CAGNNNCTG 1 cut(s) 696
RsaI GTAC 1 cut(s) 583
RsaNI GTAC 1 cut(s) 582
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 89, 374
SatI GCNGC 3 cut(s) 66, 447, 744
Sau3AI GATC 2 cut(s) 255, 346
Sau96I GGNCC 2 cut(s) 539, 671
SchI GAGTC 3 cut(s) 8, 206, 274
ScrFI CCNGG 3 cut(s) 537, 552, 708
SduI GDGCHC 1 cut(s) 715
SetI ASST 5 cut(s) 89, 123, 234, 633, 748
SfaNI GCATC 1 cut(s) 709
SfcI CTRYAG 2 cut(s) 447, 688
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 5 cut(s) 79, 561, 597, 654, 677
SspMI CTAG 2 cut(s) 528, 754
StyD4I CCNGG 3 cut(s) 535, 550, 706
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 3 cut(s) 138, 334, 586
TasI AATT 5 cut(s) 79, 561, 597, 654, 677
TatI WGTACW 1 cut(s) 581
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 89, 374
Tru9I TTAA 2 cut(s) 89, 374
TscAI CASTG 5 cut(s) 141, 278, 522, 591, 701
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 3 cut(s) 65, 446, 743
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 4 cut(s) 154, 198, 443, 744
TspRI CASTG 5 cut(s) 141, 278, 522, 591, 701
VpaK11BI GGWCC 1 cut(s) 671
XapI RAATTY 1 cut(s) 677
XceI RCATGY 3 cut(s) 51, 62, 253
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 528, 754
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.