Rh5AG207400

Protein trichome birefringence-like 42

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017480
Physical Location & Seq
Reverse (-)
24462048 .. 24467243
5196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG207400.1

Sequence Viewer

Length: 606 bp
ATGGCATTCTCGTGCTTTCACCTTCTTCCTCTAGTACTACTGCCATTGACACTAAACCAAGTAGTGAATGGGAATCCAGTTTTTGATGATGGAGATTCAGTTCTCGATTATGCAGAAGGAGCTGGAGTACTGATGAAGCAGTCATCACATGGCTGCAATTTTTTTCAAGGGAGTTGGGTTGCTGACGGTGAATACCCACTTTACAATGCTTCAAGCTGTCCATTCATTGGATTCAATTGCATAAAGAATGGTAGACCTGATAAACAGTACTTCAAATATAGATGGAAGCCTACTGGTTGTGACCTTCCAAGTGGAAAGGAATGGAAGGAACCAAAAGCAAGAAGTTGCAGAGGACAAACAAAACCACTGCTGGGAGCTAGTTATCCAAGCCCAACTCATCCAGGAGAAGCAATTGTGAAGAGTGTATTGAGTACAGTGGCAAAGCCAATTTACTTGCTTGACATTACATTGCTGACACAGCTAAGAAAAGATGGGCACCCTTCAATTTATGCCGGCCTTGGTCCCAAATTTGTGGACTGCAGTCACTGGTGTCTTCCTGGTGCTCCTGATGCTTGGAATGAACTTCTGTATGCAGCTTTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

201

Amino Acids

22.07

Weight (kDa)

7.55

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 51 - 101 2.1e-21 PMR5 N terminal Domain
PC-Esterase PF13839 104 - 198 5.3e-27 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78710 AT1G78710
malus_domestica MD11G1269200.v1.1
prunus_persica Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1 Prupe.4G157100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0029581
rosa_laevigata RLG00000033182
rosa_multiflora Rmu_sc0001608.1_g000004
rosa_roxburghii Rroxscaffold_1G00050350
rosa_samantha Rh5AG207400 Rh5CG228000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 227
AccI GTMKAC 1 cut(s) 253
AcsI RAATTY 1 cut(s) 527
AfaI GTAC 4 cut(s) 36, 129, 269, 433
AfiI CCNNNNNNNGG 2 cut(s) 227, 371
AgsI TTSAA 5 cut(s) 167, 213, 235, 274, 504
AjnI CCWGG 2 cut(s) 400, 556
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 5 cut(s) 122, 216, 377, 481, 596
AluI AGCT 5 cut(s) 122, 216, 377, 481, 596
Alw21I GWGCWC 1 cut(s) 565
AlwNI CAGNNNCTG 1 cut(s) 546
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 2 cut(s) 153, 593
ApoI RAATTY 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 2 cut(s) 11, 200
AvaII GGWCC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 498
BanI GGYRCC 1 cut(s) 495
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 1 cut(s) 140
BccI CCATC 3 cut(s) 83, 276, 485
BciT130I CCWGG 2 cut(s) 402, 558
BfaI CTAG 3 cut(s) 32, 378, 604
BfmI CTRYAG 1 cut(s) 538
BisI GCNGC 2 cut(s) 154, 594
BlsI GCNGC 2 cut(s) 155, 595
BmcAI AGTACT 3 cut(s) 36, 129, 269
Bme1390I CCNGG 2 cut(s) 402, 558
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 3 cut(s) 330, 497, 523
BmrFI CCNGG 2 cut(s) 402, 558
BmsI GCATC 1 cut(s) 559
BoxI GACNNNNGTC 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 517
BsaXI ACNNNNNCTCC 4 cut(s) 84, 111, 114, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 371
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 3 cut(s) 77, 298, 551
Bse3DI GCAATG 1 cut(s) 467
BseBI CCWGG 2 cut(s) 402, 558
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 227, 371
BseMI GCAATG 1 cut(s) 467
BseNI ACTGG 3 cut(s) 77, 298, 551
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 370
BshFI GGCC 1 cut(s) 516
BshNI GGYRCC 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 565
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 227, 371
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 498, 565
BspANI GGCC 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 330, 497, 523
BspMAI CTGCAG 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 467
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 3 cut(s) 77, 298, 551
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 517
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 517
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 2 cut(s) 402, 558
Bst4CI ACNGT 3 cut(s) 188, 267, 436
Bst6I CTCTTC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 397
BstMWI GCNNNNNNNGC 3 cut(s) 119, 478, 569
BstNI CCWGG 2 cut(s) 402, 558
BstPAI GACNNNNGTC 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 400, 556
BstSFI CTRYAG 1 cut(s) 538
BstSLI GKGCMC 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 532
BsuRI GGCC 1 cut(s) 516
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 3 cut(s) 365, 441, 544
Cac8I GCNNGC 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 521
Csp6I GTAC 4 cut(s) 35, 128, 268, 432
CviAII CATG 1 cut(s) 149
CviQI GTAC 4 cut(s) 35, 128, 268, 432
DdeI CTNAG 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 400, 556
EcoT14I CCWWGG 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 517
FaeI CATG 1 cut(s) 152
FaiI YATR 6 cut(s) 111, 150, 242, 279, 510, 591
FaqI GGGAC 1 cut(s) 507
FatI CATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 154, 594
FokI GGATG 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 154, 594
FspBI CTAG 3 cut(s) 32, 378, 604
GluI GCNGC 2 cut(s) 154, 594
GsaI CCCAGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 516
HapII CCGG 1 cut(s) 513
Hin1II CATG 1 cut(s) 152
HinfI GANTC 3 cut(s) 73, 95, 231
HpaII CCGG 1 cut(s) 513
HphI GGTGA 2 cut(s) 11, 200
Hpy166II GTNNAC 2 cut(s) 254, 535
Hpy188III TCNNGA 2 cut(s) 104, 566
Hpy8I GTNNAC 2 cut(s) 254, 535
HpyAV CCTTC 5 cut(s) 32, 110, 314, 319, 510
HpyCH4III ACNGT 3 cut(s) 188, 267, 436
HpyCH4V TGCA 6 cut(s) 113, 156, 240, 348, 540, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 478, 569
HpyF3I CTNAG 1 cut(s) 482
Hsp92II CATG 1 cut(s) 152
KroI GCCGGC 1 cut(s) 512
KroNI GCCGGC 1 cut(s) 514
LmnI GCTCC 3 cut(s) 119, 374, 568
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 559
MaeI CTAG 3 cut(s) 32, 378, 604
MaeIII GTNAC 2 cut(s) 299, 542
MboII GAAGA 3 cut(s) 17, 430, 545
MfeI CAATTG 2 cut(s) 235, 411
MhlI GDGCHC 2 cut(s) 498, 565
MluCI AATT 6 cut(s) 157, 235, 411, 447, 504, 527
MnlI CCTC 2 cut(s) 39, 344
MroNI GCCGGC 1 cut(s) 512
MslI CAYNNNNRTG 1 cut(s) 10
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 2 cut(s) 402, 558
MunI CAATTG 2 cut(s) 235, 411
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 2 cut(s) 402, 558
MwoI GCNNNNNNNGC 3 cut(s) 119, 478, 569
NaeI GCCGGC 1 cut(s) 514
NgoMIV GCCGGC 1 cut(s) 512
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 3 cut(s) 330, 497, 523
NmuCI GTSAC 2 cut(s) 299, 542
PctI GAATGC 1 cut(s) 5
PdiI GCCGGC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 73, 95, 231
PflMI CCANNNNNTGG 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 400
PkrI GCNGC 2 cut(s) 155, 595
PshAI GACNNNNGTC 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 400, 556
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 2 cut(s) 400, 556
PspN4I GGNNCC 3 cut(s) 330, 497, 523
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 542
PstNI CAGNNNCTG 1 cut(s) 546
RsaI GTAC 4 cut(s) 36, 129, 269, 433
RsaNI GTAC 4 cut(s) 35, 128, 268, 432
RseI CAYNNNNRTG 1 cut(s) 10
SatI GCNGC 2 cut(s) 154, 594
Sau96I GGNCC 1 cut(s) 521
ScaI AGTACT 3 cut(s) 36, 129, 269
ScrFI CCNGG 2 cut(s) 402, 558
SduI GDGCHC 2 cut(s) 498, 565
SetI ASST 8 cut(s) 24, 124, 218, 259, 306, 379, 483, 598
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 10
Sse9I AATT 6 cut(s) 157, 235, 411, 447, 504, 527
SspMI CTAG 3 cut(s) 32, 378, 604
StyD4I CCNGG 2 cut(s) 400, 556
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 3 cut(s) 188, 267, 436
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 157, 235, 411, 447, 504, 527
TatI WGTACW 4 cut(s) 34, 127, 267, 431
TfiI GAWTC 3 cut(s) 73, 95, 231
TscAI CASTG 3 cut(s) 372, 441, 551
TseFI GTSAC 2 cut(s) 299, 542
TseI GCWGC 2 cut(s) 153, 593
Tsp45I GTSAC 2 cut(s) 299, 542
TspDTI ATGAA 3 cut(s) 149, 214, 594
TspRI CASTG 3 cut(s) 372, 441, 551
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 3 cut(s) 32, 378, 604
ZrmI AGTACT 3 cut(s) 36, 129, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.