AT1G79040

photosystem II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016135
Physical Location & Seq
Forward (+)
29735952 .. 29737009
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79040.1

Sequence Viewer

Length: 423 bp
ATGGCTGCTTCAGTGATGCTATCTTCGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCTAGAGGATTACCGTCGCTCACAAGAGCTCGTCCCTCCTTCAAAATTGTCGCCAGTGGCGTCAAGAAGATCAAGACCGACAAGCCCTTCGGAATTAACGGCAGCATGGACTTGAGGGACGGCGTCGACGCCTCCGGCAGAAAGGGCAAGGGATACGGTGTTTACAAGTACGTCGACAAGTATGGAGCTAACGTCGATGGATACAGTCCTATTTACAACGAGAACGAGTGGTCAGCGAGTGGTGACGTGTACAAGGGAGGAGTCACCGGATTGGCAATTTGGGCGGTAACTCTCGCCGGAATTCTTGCCGGAGGTGCTCTTCTTGTGTACAACACAAGTGCTTTGGCTCAGTAA

Protein Analysis

140

Amino Acids

14.59

Weight (kDa)

9.63

Isoelectric Point (pI)

2.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbR PF04725 42 - 139 6.3e-50 Photosystem II 10 kDa polypeptide PsbR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79040
fragaria_vesca FvH4_3g16050
malus_domestica MD05G1215200.v1.1 MD10G1198300.v1.1
prunus_persica Prupe.4G143700_v2.0.a1
pyrus_communis pycom05g19820 pycom10g17100
rosa_chinensis RchiOBHm_Chr5g0027021
rosa_laevigata RLG00000032979 RLG00000032983
rosa_roxburghii Rroxscaffold_1G00052470
rosa_rugosa Rorug05G0096600 Rorug05G0096700
rosa_samantha Rh5AG190200
rosa_wichuraiana Rw5G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 195, 243
AciI CCGC 2 cut(s) 68, 353
AcsI RAATTY 1 cut(s) 369
AcyI GRCGYC 3 cut(s) 129, 192, 198
AfaI GTAC 3 cut(s) 239, 320, 398
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 2 cut(s) 37, 112
AjiI CACGTC 1 cut(s) 316
AluBI AGCT 3 cut(s) 44, 98, 257
AluI AGCT 3 cut(s) 44, 98, 257
Alw21I GWGCWC 2 cut(s) 100, 388
ApeKI GCWGC 2 cut(s) 5, 171
ApoI RAATTY 1 cut(s) 369
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsuHPI GGTGA 3 cut(s) 40, 323, 325
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 2 cut(s) 100, 388
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 260
BceAI ACGGC 3 cut(s) 81, 184, 205
BciVI GTATCC 2 cut(s) 215, 263
BfaI CTAG 1 cut(s) 72
BfuI GTATCC 2 cut(s) 215, 263
BisI GCNGC 3 cut(s) 6, 69, 172
BlsI GCNGC 3 cut(s) 7, 70, 173
BmgBI CACGTC 1 cut(s) 316
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 202
BsaHI GRCGYC 3 cut(s) 129, 192, 198
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 100, 388
BsiSI CCGG 4 cut(s) 204, 336, 366, 378
BslFI GGGAC 2 cut(s) 87, 200
BsmFI GGGAC 2 cut(s) 87, 200
Bsp1286I GDGCHC 2 cut(s) 100, 388
Bsp1407I TGTACA 2 cut(s) 318, 396
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 2 cut(s) 68, 353
BspQI GCTCTTC 1 cut(s) 393
BsrGI TGTACA 2 cut(s) 318, 396
BsrI ACTGG 1 cut(s) 123
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 3 cut(s) 129, 192, 198
Bst4CI ACNGT 4 cut(s) 55, 84, 227, 275
Bst6I CTCTTC 1 cut(s) 393
BstACI GRCGYC 3 cut(s) 129, 192, 198
BstAUI TGTACA 2 cut(s) 318, 396
BstDEI CTNAG 1 cut(s) 417
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 213, 350, 383
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 68
BsuI GTATCC 2 cut(s) 215, 263
BtrI CACGTC 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 18, 130
CseI GACGC 3 cut(s) 118, 181, 206
Csp6I GTAC 3 cut(s) 238, 319, 397
CviAII CATG 1 cut(s) 175
CviJI RGCY 7 cut(s) 5, 44, 71, 98, 154, 257, 416
CviKI_1 RGCY 7 cut(s) 5, 44, 71, 98, 154, 257, 416
CviQI GTAC 3 cut(s) 238, 319, 397
DdeI CTNAG 1 cut(s) 417
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 100
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 176, 252
FaqI GGGAC 2 cut(s) 87, 200
FatI CATG 1 cut(s) 174
FblI GTMKAC 2 cut(s) 195, 243
Fnu4HI GCNGC 3 cut(s) 6, 69, 172
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 3 cut(s) 6, 69, 172
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 6, 69, 172
HapII CCGG 4 cut(s) 204, 336, 366, 378
HgaI GACGC 3 cut(s) 118, 181, 206
Hin1I GRCGYC 3 cut(s) 129, 192, 198
Hin1II CATG 1 cut(s) 178
HincII GTYRAC 2 cut(s) 196, 244
HindII GTYRAC 2 cut(s) 196, 244
HinfI GANTC 1 cut(s) 330
HpaII CCGG 4 cut(s) 204, 336, 366, 378
HphI GGTGA 3 cut(s) 40, 323, 325
Hpy166II GTNNAC 5 cut(s) 196, 232, 244, 319, 397
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 133, 142
Hpy8I GTNNAC 5 cut(s) 196, 232, 244, 319, 397
Hpy99I CGWCG 5 cut(s) 88, 197, 200, 245, 266
HpyAV CCTTC 2 cut(s) 118, 166
HpyCH4III ACNGT 4 cut(s) 55, 84, 227, 275
HpyCH4IV ACGT 3 cut(s) 240, 261, 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 350, 383
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 3 cut(s) 240, 261, 315
Hsp92I GRCGYC 3 cut(s) 129, 192, 198
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 7 cut(s) 30, 54, 136, 217, 349, 379, 391
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 72
MaeII ACGT 3 cut(s) 240, 261, 315
MaeIII GTNAC 4 cut(s) 28, 311, 331, 355
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 4 cut(s) 15, 73, 148, 380
MhlI GDGCHC 2 cut(s) 100, 388
MluCI AATT 4 cut(s) 114, 162, 345, 369
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 6 cut(s) 68, 115, 177, 211, 320, 374
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 4 cut(s) 204, 336, 366, 378
MwoI GCNNNNNNNGC 3 cut(s) 213, 350, 383
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 178
NmuCI GTSAC 3 cut(s) 28, 311, 331
PciSI GCTCTTC 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 7, 70, 173
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 239, 320, 398
RsaNI GTAC 3 cut(s) 238, 319, 397
SacI GAGCTC 1 cut(s) 100
SalI GTCGAC 2 cut(s) 194, 242
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 3 cut(s) 6, 69, 172
Sau3AI GATC 1 cut(s) 138
SchI GAGTC 1 cut(s) 339
SduI GDGCHC 2 cut(s) 100, 388
SetI ASST 7 cut(s) 46, 100, 243, 259, 264, 318, 385
SfaNI GCATC 1 cut(s) 6
SgrDI CGTCGACG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 4 cut(s) 114, 162, 345, 369
SsiI CCGC 2 cut(s) 68, 353
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 1 cut(s) 100
TaaI ACNGT 4 cut(s) 55, 84, 227, 275
TaiI ACGT 3 cut(s) 243, 264, 318
TaqI TCGA 3 cut(s) 195, 243, 264
TaqII GACCGA 1 cut(s) 161
TasI AATT 4 cut(s) 114, 162, 345, 369
TatI WGTACW 2 cut(s) 318, 396
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 18, 130
TseFI GTSAC 3 cut(s) 28, 311, 331
TseI GCWGC 2 cut(s) 5, 171
Tsp45I GTSAC 3 cut(s) 28, 311, 331
TspRI CASTG 2 cut(s) 18, 130
Tth111I GACNNNGTC 1 cut(s) 191
XapI RAATTY 1 cut(s) 369
XmiI GTMKAC 2 cut(s) 195, 243
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.