Prupe.4G143700_v2.0.a1

Photosystem II 10 kDa polypeptide

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
8242560 .. 8244430
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G143700.1

Sequence Viewer

Length: 420 bp
ATGGCAGCCTCAGTTATGGCTTCAGTGAGTCTAAAACCATCTCCTTTCACTGTTGAGAAGTCAGCAGTGAGAGGCCTTCCCTCTCTTGCCAGGACTTCTTCTTCATTCAAGGTTCAAGCCAGTGGTGGCAAGAAGATCAAAACTGACACACCCTATGGAACCGGTGGTGGCATGAACTTGAAGGATGGGAAAGATGCCTCCGGGAGGAAGCCTACGGGTAAGGGTGTCTACCAGTTTGTAGACAAGTATGGTGCTAATGTTGATGGCTACAGTCCCATCTACAACAGAGATGAATGGTCACCATCTGGTGATGTTTATGCTGGGGGTGCTACTGGCTTGGCCATCTGGGCTGTTACCCTACTTGGCATTCTTGCAGGGGGTGCTCTTCTTGTTTACAACACAAGTGCTTTGTCACAGTAG

Protein Analysis

140

Amino Acids

14.29

Weight (kDa)

9.58

Isoelectric Point (pI)

15.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79040
fragaria_vesca FvH4_3g16050
malus_domestica MD05G1215200.v1.1 MD10G1198300.v1.1
prunus_persica Prupe.4G143700_v2.0.a1
pyrus_communis pycom05g19820 pycom10g17100
rosa_chinensis RchiOBHm_Chr5g0027021
rosa_laevigata RLG00000032979 RLG00000032983
rosa_roxburghii Rroxscaffold_1G00052470
rosa_rugosa Rorug05G0096600 Rorug05G0096700
rosa_samantha Rh5AG190200
rosa_wichuraiana Rw5G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 228, 240
AcoI YGGCCR 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 204
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 3 cut(s) 109, 116, 181
AjnI CCWGG 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 385
AoxI GGCC 2 cut(s) 73, 339
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 291, 320
BalI TGGCCA 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 17
BccI CCATC 6 cut(s) 46, 179, 257, 284, 310, 350
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 91, 202
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 91, 202
BmsI GCATC 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 3 cut(s) 120, 232, 337
BseBI CCWGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 3 cut(s) 120, 232, 337
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 320
BshFI GGCC 2 cut(s) 75, 341
BshTI ACCGGT 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 2 cut(s) 162, 201
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 2 cut(s) 75, 341
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 135
BspANI GGCC 2 cut(s) 75, 341
BspCNI CTCAG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 3 cut(s) 120, 232, 337
BssAI RCCGGY 1 cut(s) 161
BssMI GATC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 3 cut(s) 52, 272, 417
Bst6I CTCTTC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 10
BstEII GGTNACC 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 3 cut(s) 326, 347, 380
BstNI CCWGG 1 cut(s) 91
BstPI GGTNACC 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 89, 200
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 75, 341
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 4 cut(s) 30, 48, 72, 127
Cfr10I RCCGGY 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 161
CviAII CATG 1 cut(s) 172
CviJI RGCY 9 cut(s) 8, 20, 75, 119, 211, 267, 336, 341, 350
CviKI_1 RGCY 9 cut(s) 8, 20, 75, 119, 211, 267, 336, 341, 350
DdeI CTNAG 1 cut(s) 10
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 6
Eco91I GGTNACC 1 cut(s) 297
EcoNI CCTNNNNNAGG 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 175
FaiI YATR 5 cut(s) 17, 156, 173, 249, 318
FaqI GGGAC 1 cut(s) 258
FatI CATG 1 cut(s) 171
FblI GTMKAC 2 cut(s) 228, 240
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 75, 341
HapII CCGG 2 cut(s) 162, 201
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 28
HpaII CCGG 2 cut(s) 162, 201
HphI GGTGA 2 cut(s) 291, 320
Hpy166II GTNNAC 3 cut(s) 229, 241, 394
Hpy8I GTNNAC 3 cut(s) 229, 241, 394
HpyAV CCTTC 2 cut(s) 86, 175
HpyCH4III ACNGT 3 cut(s) 52, 272, 417
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 347, 380
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 135
LguI GCTCTTC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 3 cut(s) 297, 352, 411
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 4 cut(s) 90, 93, 145, 377
MhlI GDGCHC 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 341
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 5 cut(s) 19, 65, 91, 198, 208
Mox20I TGGCCA 1 cut(s) 341
MscI TGGCCA 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 2 cut(s) 162, 201
MspR9I CCNGG 2 cut(s) 91, 202
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 3 cut(s) 326, 347, 380
NciI CCSGG 1 cut(s) 202
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 2 cut(s) 297, 411
PceI AGGCCT 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 390
PctI GAATGC 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 390
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 91, 202
SduI GDGCHC 1 cut(s) 385
SetI ASST 1 cut(s) 114
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 268
SseBI AGGCCT 1 cut(s) 75
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 89, 200
TaaI ACNGT 3 cut(s) 52, 272, 417
TscAI CASTG 4 cut(s) 30, 55, 72, 127
TseFI GTSAC 2 cut(s) 297, 411
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 297, 411
TspDTI ATGAA 3 cut(s) 93, 188, 306
TspRI CASTG 4 cut(s) 30, 55, 72, 127
XagI CCTNNNNNAGG 1 cut(s) 202
XmiI GTMKAC 2 cut(s) 228, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.