Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0016135

Physical Location & Seq

Genomic Coordinates Forward (+)

20255969 .. 20257731

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTAGTGTTACTATTTATTATCAGGGACTTGGACGCCGCATACCACACGATAGCCAATCAGCAAAAGAAAAAAGCACAAGTCCAGCAAAAATGTCGGCCTCAGTTATGGCTTGTTCAGTGAGCCTAAAACCATCTCCCTTCACTGTTGAGAAGTCAGCAGTGAGAGGCCTTCCCTCTCTTTCCAGGTCCTCTGCTTCATTCAAGGTGCAAGCCAGTGGCGTGAAGAAAATCAAGACTGCCACCCCATATGGAACTGGTGGCGGCATGGACTTGAGGAACGGTGTTGATGCCTCCGGGAGGAAGCCTACGGGAAAGGGTGTCTACCAGTTTGTAGACAAGTACGGTGCTAATGTTGATGGATACAGTCCCATCTACAACAAAGATGAGTGGGCTCCATCTGGTGATGTCTATGCTGGGGGTCTTACTGGCTTGGCCATCTGGGCAGTTACCCTCGTTGGCATTCTTGCAGGGGGTGCCCTTCTTGTCTTCAACACAAGTGCTTTGTCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbR

Protein Analysis

172

Amino Acids

17.77

Weight (kDa)

9.71

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79040
fragaria_vesca	FvH4_3g16050
malus_domestica	MD05G1215200.v1.1 MD10G1198300.v1.1
prunus_persica	Prupe.4G143700_v2.0.a1
pyrus_communis	pycom05g19820 pycom10g17100
rosa_chinensis	RchiOBHm_Chr5g0027021
rosa_laevigata	RLG00000032979 RLG00000032983
rosa_roxburghii	Rroxscaffold_1G00052470
rosa_rugosa	Rorug05G0096600 Rorug05G0096700
rosa_samantha	Rh5AG190200
rosa_wichuraiana	Rw5G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	2 cut(s)	324, 336
AciI	CCGC	2 cut(s)	40, 264
AcoI	YGGCCR	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	205, 493
AjnI	CCWGG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	99, 169, 435
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	481
BccI	CCATC	5 cut(s)	142, 353, 380, 406, 446
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	2 cut(s)	40, 265
BlsI	GCNGC	2 cut(s)	41, 266
Bme1390I	CCNGG	2 cut(s)	187, 298
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	396, 478
BmrFI	CCNGG	2 cut(s)	187, 298
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	4 cut(s)	216, 262, 328, 433
BseBI	CCWGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	4 cut(s)	216, 262, 328, 433
BseSI	GKGCMC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	416
BshFI	GGCC	3 cut(s)	101, 171, 437
BshNI	GGYRCC	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	42, 354
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmFI	GGGAC	2 cut(s)	42, 354
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	101, 171, 437
Bsp1286I	GDGCHC	2 cut(s)	397, 481
BspACI	CCGC	2 cut(s)	40, 264
BspANI	GGCC	3 cut(s)	101, 171, 437
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	2 cut(s)	396, 478
BspT107I	GGYRCC	1 cut(s)	476
BsrI	ACTGG	4 cut(s)	216, 262, 328, 433
BssNI	GRCGYC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	5 cut(s)	148, 284, 347, 368, 513
BstACI	GRCGYC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 476
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	185, 296
BstSLI	GKGCMC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	101, 171, 437
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	4 cut(s)	126, 144, 168, 223
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	268
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	435
Eco147I	AGGCCT	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	1 cut(s)	271
FaiI	YATR	6 cut(s)	44, 110, 250, 252, 269, 414
FaqI	GGGAC	2 cut(s)	42, 354
FatI	CATG	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	250
FblI	GTMKAC	2 cut(s)	324, 336
Fnu4HI	GCNGC	2 cut(s)	40, 265
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	40, 265
GluI	GCNGC	2 cut(s)	40, 265
GsaI	CCCAGC	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	101, 171, 437
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	271
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	325, 337
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	325, 337
HpyAV	CCTTC	3 cut(s)	151, 182, 491
HpyCH4III	ACNGT	5 cut(s)	148, 284, 347, 368, 513
HpyCH4V	TGCA	2 cut(s)	211, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 476
HpyF3I	CTNAG	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	400
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	10, 448, 507
MboII	GAAGA	2 cut(s)	238, 481
MhlI	GDGCHC	2 cut(s)	397, 481
MlsI	TGGCCA	1 cut(s)	437
MluNI	TGGCCA	1 cut(s)	437
MnlI	CCTC	8 cut(s)	112, 161, 187, 202, 270, 294, 304, 464
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	437
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	187, 298
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	443, 476
NciI	CCSGG	1 cut(s)	298
NdeI	CATATG	1 cut(s)	250
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	396, 478
NmuCI	GTSAC	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	171
PctI	GAATGC	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	41, 266
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	396, 478
PspPI	GGNCC	1 cut(s)	189
PspPPI	RGGWCCY	1 cut(s)	189
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SatI	GCNGC	2 cut(s)	40, 265
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	187, 298
SduI	GDGCHC	2 cut(s)	397, 481
SetI	ASST	2 cut(s)	191, 210
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	40, 264
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	185, 296
TaaI	ACNGT	5 cut(s)	148, 284, 347, 368, 513
TauI	GCSGC	2 cut(s)	42, 267
TscAI	CASTG	4 cut(s)	126, 151, 168, 223
TseFI	GTSAC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	4 cut(s)	126, 151, 168, 223
VpaK11BI	GGWCC	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	298
XmiI	GTMKAC	2 cut(s)	324, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.