Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016135

Physical Location & Seq

Genomic Coordinates Reverse (-)

10108160 .. 10109577

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCAGCCTCAGTTATGGCCTCAGTGAGCTTGAAACCAGCTCCTTTCAGCTTTGAGAAGTCAGCAGTGAGAGGGCTTCCCTCTCTTGCTAGGACCTCTGCATCATTCAAGGTCCAAGCCAGTGGTGGCAAGAAGATCAAGACTGCCACCCCCTATGGAACTGGTGGTGGAATGAACTTGAGGGATGGGGTAGATGCCTCAGGAAGGAAGGGTAAAGGAAAGGGTGTCTACCAGTATGTAGACAAATATGGCGCTAATGTTGATGGATACAGTCCCATCTACAACACCGATGAATGGTCTCCAAGTGGTGATTACTATGCTGGTGGTGCCACTGGCTTGGCTATCTGGGCTGTGACCCTCTTCGGCATTCTTGCCGGGGGTGCTCTTCTTGTCTACAACACCAGTGCATTGTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbR

Protein Analysis

140

Amino Acids

14.29

Weight (kDa)

9.55

Isoelectric Point (pI)

13.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbR	PF04725	41 - 138	8.5e-50	Photosystem II 10 kDa polypeptide PsbR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79040
fragaria_vesca	FvH4_3g16050
malus_domestica	MD05G1215200.v1.1 MD10G1198300.v1.1
prunus_persica	Prupe.4G143700_v2.0.a1
pyrus_communis	pycom05g19820 pycom10g17100
rosa_chinensis	RchiOBHm_Chr5g0027021
rosa_laevigata	RLG00000032979 RLG00000032983
rosa_roxburghii	Rroxscaffold_1G00052470
rosa_rugosa	Rorug05G0096600 Rorug05G0096700
rosa_samantha	Rh5AG190200
rosa_wichuraiana	Rw5G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	3 cut(s)	228, 240, 393
AfiI	CCNNNNNNNGG	2 cut(s)	204, 294
AgsI	TTSAA	2 cut(s)	34, 109
AluBI	AGCT	3 cut(s)	30, 41, 51
AluI	AGCT	3 cut(s)	30, 41, 51
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	93, 112
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	93, 112
AxyI	CCTNAGG	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	179, 257, 284
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	2 cut(s)	93, 112
BmgT120I	GGNCC	2 cut(s)	93, 112
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	110, 184
BpuEI	CTTGAG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 294
Bse1I	ACTGG	5 cut(s)	120, 166, 232, 337, 402
Bse21I	CCTNAGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	204, 294
BseMII	CTCAG	3 cut(s)	24, 36, 213
BseNI	ACTGG	5 cut(s)	120, 166, 232, 337, 402
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	204, 294
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	23, 35, 212
BspLI	GGNNCC	1 cut(s)	328
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	303
BsrI	ACTGG	5 cut(s)	120, 166, 232, 337, 402
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	272, 417
Bst6I	CTCTTC	2 cut(s)	365, 390
BstDEI	CTNAG	3 cut(s)	10, 22, 199
BstENI	CCTNNNNNAGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 347, 380
BstSCI	CCNGG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	17
BstXI	CCANNNNNNTGG	2 cut(s)	122, 337
Bsu36I	CCTNAGG	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	5 cut(s)	30, 72, 127, 330, 409
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	93, 112
DdeI	CTNAG	3 cut(s)	10, 22, 199
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	365, 390
EarI	CTCTTC	2 cut(s)	365, 390
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	93, 112
Eco81I	CCTNAGG	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	93
FaiI	YATR	5 cut(s)	17, 156, 237, 249, 318
FaqI	GGGAC	1 cut(s)	258
FblI	GTMKAC	3 cut(s)	228, 240, 393
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	3 cut(s)	229, 241, 394
Hpy188III	TCNNGA	2 cut(s)	139, 201
Hpy8I	GTNNAC	3 cut(s)	229, 241, 394
HpyAV	CCTTC	2 cut(s)	198, 202
HpyCH4III	ACNGT	2 cut(s)	272, 417
HpyCH4V	TGCA	2 cut(s)	101, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 347, 380
HpyF3I	CTNAG	3 cut(s)	10, 22, 199
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	135
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	110, 184
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	352, 411
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	3 cut(s)	145, 352, 377
MhlI	GDGCHC	1 cut(s)	385
MnlI	CCTC	8 cut(s)	19, 31, 65, 91, 106, 174, 208, 368
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	326, 347, 380
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	135
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	2 cut(s)	352, 411
PciSI	GCTCTTC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	93, 112
PspPPI	RGGWCCY	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	390
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	2 cut(s)	93, 112
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	5 cut(s)	32, 43, 53, 98, 114
SfaNI	GCATC	2 cut(s)	110, 184
SinI	GGWCC	2 cut(s)	93, 112
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	272, 417
TscAI	CASTG	5 cut(s)	30, 72, 127, 337, 409
TseFI	GTSAC	2 cut(s)	352, 411
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	352, 411
TspDTI	ATGAA	2 cut(s)	188, 306
TspRI	CASTG	5 cut(s)	30, 72, 127, 337, 409
VpaK11BI	GGWCC	2 cut(s)	93, 112
XagI	CCTNNNNNAGG	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmiI	GTMKAC	3 cut(s)	228, 240, 393
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.