Rroxscaffold_1G00052470

Photosystem II 10 kDa polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016135
Physical Location & Seq
Forward (+)
73235820 .. 73247883
12064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052470.1

Sequence Viewer

Length: 420 bp
ATGGCAGCCTCAGTTATGGCCTCAATGAGCTTGAAACCAGCTCCTTTCAGTTTTGAGAAGTCAGCAGTGAGAGGCCTTCCCTCTCTTGCTAGGACCTCTGCCTCATTCAAGGTCCAAGCCAGTGGTGGCAAGAAGATCAAGACTGATACACCCTATGGAACTGGTGGTGGCATGAACTTGAGGGAAGGGAAAGATGCATCAGGAAGGAAGCCTAAAGGAAAGGGTGTCTACCAGTTTGTAGACAAATATGGTGCTAATGTTGATGGATACAGTCCCATCTACAGCCCAGAGGAATGGTCCCCAAGTGGTGATCGCTACGCTGGTGGTGCCACTGGCTTGGCTATCTGGGCTGTGACCCTTTTCGGCATTCTTGCCGGGGGTGCTCTTCTTGTCTACAACACCAGTGCATTGCCACAGTAG

Protein Analysis

139

Amino Acids

14.42

Weight (kDa)

9.7

Isoelectric Point (pI)

23.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbR PF04725 41 - 137 4.1e-50 Photosystem II 10 kDa polypeptide PsbR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79040
fragaria_vesca FvH4_3g16050
malus_domestica MD05G1215200.v1.1 MD10G1198300.v1.1
prunus_persica Prupe.4G143700_v2.0.a1
pyrus_communis pycom05g19820 pycom10g17100
rosa_chinensis RchiOBHm_Chr5g0027021
rosa_laevigata RLG00000032979 RLG00000032983
rosa_roxburghii Rroxscaffold_1G00052470
rosa_rugosa Rorug05G0096600 Rorug05G0096700
rosa_samantha Rh5AG190200
rosa_wichuraiana Rw5G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AccI GTMKAC 3 cut(s) 228, 240, 393
AgsI TTSAA 2 cut(s) 34, 109
AluBI AGCT 2 cut(s) 30, 41
AluI AGCT 2 cut(s) 30, 41
Alw21I GWGCWC 1 cut(s) 385
AoxI GGCC 2 cut(s) 18, 73
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 3 cut(s) 93, 112, 297
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 3 cut(s) 93, 112, 297
BanI GGYRCC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 257, 284
BciVI GTATCC 1 cut(s) 260
BcnI CCSGG 1 cut(s) 376
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 280
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 3 cut(s) 93, 112, 297
BmgT120I GGNCC 3 cut(s) 93, 112, 297
BmiI GGNNCC 2 cut(s) 299, 328
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 2 cut(s) 184, 206
BpuEI CTTGAG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 375
Bse1I ACTGG 5 cut(s) 120, 166, 232, 337, 402
Bse3DI GCAATG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 375
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 5 cut(s) 120, 166, 232, 337, 402
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 20, 75
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 2 cut(s) 258, 283
BsmFI GGGAC 2 cut(s) 258, 283
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 2 cut(s) 20, 75
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 2 cut(s) 135, 310
BspANI GGCC 2 cut(s) 20, 75
BspCNI CTCAG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 299, 328
BspQI GCTCTTC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 5 cut(s) 120, 166, 232, 337, 402
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 2 cut(s) 135, 310
Bst4CI ACNGT 2 cut(s) 272, 417
Bst6I CTCTTC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 10
BstKTI GATC 2 cut(s) 138, 313
BstMBI GATC 2 cut(s) 135, 310
BstMWI GCNNNNNNNGC 3 cut(s) 326, 347, 380
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 17
BstXI CCANNNNNNTGG 3 cut(s) 122, 294, 337
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 2 cut(s) 20, 75
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 4 cut(s) 72, 127, 330, 409
Cfr13I GGNCC 3 cut(s) 93, 112, 297
CviAII CATG 1 cut(s) 172
DdeI CTNAG 1 cut(s) 10
DpnI GATC 2 cut(s) 137, 312
DpnII GATC 2 cut(s) 135, 310
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 3 cut(s) 93, 112, 297
EcoO109I RGGNCCY 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 199
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 17, 156, 173, 249
FaqI GGGAC 2 cut(s) 258, 283
FatI CATG 1 cut(s) 171
FblI GTMKAC 3 cut(s) 228, 240, 393
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 20, 75
HapII CCGG 1 cut(s) 375
Hin1II CATG 1 cut(s) 175
HpaII CCGG 1 cut(s) 375
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 3 cut(s) 229, 241, 394
Hpy188III TCNNGA 2 cut(s) 139, 201
Hpy8I GTNNAC 3 cut(s) 229, 241, 394
HpyAV CCTTC 3 cut(s) 86, 179, 198
HpyCH4III ACNGT 2 cut(s) 272, 417
HpyCH4V TGCA 2 cut(s) 197, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 347, 380
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 2 cut(s) 135, 310
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 184, 206
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 137, 312
MboI GATC 2 cut(s) 135, 310
MboII GAAGA 2 cut(s) 145, 377
MhlI GDGCHC 1 cut(s) 385
MnlI CCTC 8 cut(s) 19, 31, 65, 91, 106, 112, 174, 283
Mph1103I ATGCAT 1 cut(s) 199
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 326, 347, 380
NciI CCSGG 1 cut(s) 376
NdeII GATC 2 cut(s) 135, 310
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 2 cut(s) 299, 328
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 199
PceI AGGCCT 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 390
PctI GAATGC 1 cut(s) 366
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 299, 328
PspPI GGNCC 3 cut(s) 93, 112, 297
PspPPI RGGWCCY 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 390
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 135, 310
Sau96I GGNCC 3 cut(s) 93, 112, 297
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 385
SetI ASST 4 cut(s) 32, 43, 98, 114
SfaNI GCATC 2 cut(s) 184, 206
SfcI CTRYAG 1 cut(s) 280
SinI GGWCC 3 cut(s) 93, 112, 297
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SseBI AGGCCT 1 cut(s) 75
SspMI CTAG 1 cut(s) 90
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 272, 417
TscAI CASTG 4 cut(s) 72, 127, 337, 409
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 4 cut(s) 72, 127, 337, 409
VpaK11BI GGWCC 3 cut(s) 93, 112, 297
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 3 cut(s) 228, 240, 393
XspI CTAG 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.