Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Forward (+)

29800563 .. 29804033

Gene Structure 3471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCCTCGACCCTTTTCTCCAGAACTTTCTTGGCTGCTAGTCACCGACTGATTACTCCTTCTCTTCCGCAAAAGATCTTTAATCCAGCCACCTTTCTCAGTAGGTCACTCCACTCTCAGTTAGGCTCCGCTTCTACAGCCTATAAATCAACTACTTGGGCTCGTCGAGCTATGGCTTCTACTGGAGTTGAGACAAAAGCCGGTTACTCCACATCATCCGTATCAACCAGTGAACCTGTTGTTTCTGTTGATTGGCTTCATGCTAATCTTAGAGAGCCTGATTTGAAGATTTTGGATGCTTCATGGTATATGCCGGATGAGCAGAGAAATCCGATCCAAGAATATCAGGTTGCTCATATTCCCCGCGCTCTCTTCTTTGATTTGGATGGAATATCAGATCGAAAAACTAGTTTGCCACATATGTTGCCCACTGAGGAAGCTTTTGCTGCTGGTTGTTCTGCTCTTGGAATTGATAACAAAGATGAAGTGGTTGTCTATGATGGAAAGGGGATCTTTAGTGCAGCCCGTGTATGGTGGATGTTCCGAGTTTTTGGACATGAAAAAGTTTGGGTGCTCGATGGAGGTCTACCAAGATGGCGTGCATCAGGTTATGATGTTGAATCTAGTGCATCAGGTGATGCTATTCTGAAAGCCAGTGCCGCAAGTGAGGCTATAGAGAAAATTTATCAAGGACAAACCGTCAGTCCGATAACCTTTCAGACTAAGTTCCAGCCACATCTAGTGTGGACACTTGATCAGGTCAAGAACAATATGGAGGATCCGACTTATCAACACATAGACGCTCGTTCCAAAGCCAGGTTTGATGGTACTGCTCCAGAACCCCGTAAGGGAATAAGAAGCGGTCATATACCTGGAAGCAAATGTATCCCTTTTCCTCAGATGTTTGATTCTTGTAACACATTGTTACCAGCAGAGGAGCTGAAGAAACGATTTGACCAAGAAGATATCTCACTGGACAAGCCTATTATGGCCTCGTGTGGGACTGGTGTAACAGCTTGCATCTTGGCAATGGGGCTTCACCGGCTGGGGAAAACCGACGTGCCGATCTATGATGGGTCGTGGACTGAATGGGCGACACAACCAGACTTGCCCATAGAGAGTGTTGAATCTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

379

Amino Acids

41.89

Weight (kDa)

5.95

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	153 - 269	5.6e-14	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	586
AccII	CGCG	1 cut(s)	366
AciI	CCGC	5 cut(s)	68, 129, 364, 660, 861
AclWI	GGATC	4 cut(s)	328, 518, 773, 786
AcsI	RAATTY	1 cut(s)	681
AcuI	CTGAAG	1 cut(s)	962
AfaI	GTAC	1 cut(s)	829
AfiI	CCNNNNNNNGG	4 cut(s)	531, 816, 848, 999
AgsI	TTSAA	3 cut(s)	286, 620, 1127
AhdI	GACNNNNNGTC	1 cut(s)	698
AhlI	ACTAGT	1 cut(s)	407
AjiI	CACGTC	1 cut(s)	1060
AjnI	CCWGG	2 cut(s)	815, 871
AluBI	AGCT	4 cut(s)	170, 440, 940, 1016
AluI	AGCT	4 cut(s)	170, 440, 940, 1016
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	4 cut(s)	328, 518, 773, 786
AoxI	GGCC	2 cut(s)	3, 990
ApeKI	GCWGC	3 cut(s)	35, 446, 521
ApoI	RAATTY	1 cut(s)	681
ArsI	GACNNNNNNTTYG	2 cut(s)	688, 720
AspLEI	GCGC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	35, 647, 1031
BamHI	GGATCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	163
BauI	CACGAG	1 cut(s)	994
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	22, 433, 533
BccI	CCATC	6 cut(s)	380, 494, 572, 588, 818, 1067
BciT130I	CCWGG	2 cut(s)	817, 873
BciVI	GTATCC	1 cut(s)	896
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	185
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	4 cut(s)	39, 408, 624, 740
BfmI	CTRYAG	2 cut(s)	135, 672
BfuI	GTATCC	1 cut(s)	896
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	4 cut(s)	36, 447, 522, 660
BlsI	GCNGC	4 cut(s)	37, 448, 523, 661
Bme1390I	CCNGG	2 cut(s)	817, 873
BmeRI	GACNNNNNGTC	1 cut(s)	698
BmgBI	CACGTC	1 cut(s)	1060
BmiI	GGNNCC	2 cut(s)	127, 780
BmrFI	CCNGG	2 cut(s)	817, 873
BmsI	GCATC	5 cut(s)	286, 611, 628, 638, 1029
BpmI	CTGGAG	3 cut(s)	4, 204, 819
Bsc4I	CCNNNNNNNGG	4 cut(s)	531, 816, 848, 999
Bse118I	RCCGGY	2 cut(s)	200, 1041
Bse1I	ACTGG	5 cut(s)	187, 228, 654, 978, 1009
Bse3DI	GCAATG	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	817, 873
BseGI	GGATG	5 cut(s)	215, 301, 322, 391, 543
BseLI	CCNNNNNNNGG	4 cut(s)	531, 816, 848, 999
BseMI	GCAATG	1 cut(s)	1035
BseMII	CTCAG	4 cut(s)	112, 131, 423, 911
BseNI	ACTGG	5 cut(s)	187, 228, 654, 978, 1009
BseRI	GAGGAG	1 cut(s)	950
BseXI	GCAGC	3 cut(s)	22, 433, 533
BseYI	CCCAGC	1 cut(s)	1045
BsgI	GTGCAG	1 cut(s)	540
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	5, 992
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	3 cut(s)	201, 314, 1042
BslFI	GGGAC	1 cut(s)	1015
BslI	CCNNNNNNNGG	4 cut(s)	531, 816, 848, 999
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	1015
BsnI	GGCC	2 cut(s)	5, 992
Bsp1286I	GDGCHC	2 cut(s)	163, 576
Bsp143I	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
BspACI	CCGC	5 cut(s)	68, 129, 364, 660, 861
BspANI	GGCC	2 cut(s)	5, 992
BspCNI	CTCAG	4 cut(s)	111, 130, 424, 910
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	1136
BspLI	GGNNCC	2 cut(s)	127, 780
BspPI	GGATC	4 cut(s)	328, 518, 773, 786
BsrDI	GCAATG	1 cut(s)	1035
BsrFI	RCCGGY	2 cut(s)	200, 1041
BsrI	ACTGG	5 cut(s)	187, 228, 654, 978, 1009
BssAI	RCCGGY	2 cut(s)	200, 1041
BssMI	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
BssSI	CACGAG	1 cut(s)	994
Bst2BI	CACGAG	1 cut(s)	994
Bst2UI	CCWGG	2 cut(s)	817, 873
Bst4CI	ACNGT	1 cut(s)	700
Bst6I	CTCTTC	2 cut(s)	69, 377
BstC8I	GCNNGC	2 cut(s)	600, 1018
BstDEI	CTNAG	6 cut(s)	98, 117, 269, 432, 723, 897
BstF5I	GGATG	5 cut(s)	215, 301, 322, 391, 543
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	7 cut(s)	78, 336, 400, 513, 757, 781, 1068
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 167, 319, 446, 659, 668, 1042
BstNI	CCWGG	2 cut(s)	817, 873
BstSCI	CCNGG	2 cut(s)	815, 871
BstSFI	CTRYAG	2 cut(s)	135, 672
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	22, 433, 533
BstX2I	RGATCY	3 cut(s)	75, 510, 778
BstYI	RGATCY	3 cut(s)	75, 510, 778
BsuI	GTATCC	1 cut(s)	896
BsuRI	GGCC	2 cut(s)	5, 992
BtrI	CACGTC	1 cut(s)	1060
BtsCI	GGATG	5 cut(s)	215, 301, 322, 391, 543
BtsIMutI	CAGTG	4 cut(s)	235, 429, 661, 971
Cac8I	GCNNGC	2 cut(s)	600, 1018
CciI	TCATGA	1 cut(s)	1136
CfoI	GCGC	1 cut(s)	368
Cfr10I	RCCGGY	2 cut(s)	200, 1041
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	828
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	4 cut(s)	260, 303, 557, 1137
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	6 cut(s)	98, 117, 269, 432, 723, 897
DpnI	GATC	7 cut(s)	77, 335, 399, 512, 756, 780, 1067
DpnII	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
DriI	GACNNNNNGTC	1 cut(s)	698
Eam1104I	CTCTTC	2 cut(s)	69, 377
Eam1105I	GACNNNNNGTC	1 cut(s)	698
EarI	CTCTTC	2 cut(s)	69, 377
Eco24I	GRGCYC	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	967
Eco57I	CTGAAG	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	815, 871
EcoRV	GATATC	1 cut(s)	967
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	4 cut(s)	263, 306, 560, 1140
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	1 cut(s)	1015
FatI	CATG	4 cut(s)	259, 302, 556, 1136
FauI	CCCGC	1 cut(s)	371
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	4 cut(s)	36, 447, 522, 660
FokI	GGATG	5 cut(s)	202, 308, 329, 398, 550
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	4 cut(s)	36, 447, 522, 660
FspBI	CTAG	4 cut(s)	39, 408, 624, 740
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	4 cut(s)	36, 447, 522, 660
GsaI	CCCAGC	1 cut(s)	1049
GsuI	CTGGAG	3 cut(s)	4, 204, 819
HaeIII	GGCC	2 cut(s)	5, 992
HapII	CCGG	3 cut(s)	201, 314, 1042
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	263, 306, 560, 1140
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	620, 908, 1127
HpaII	CCGG	3 cut(s)	201, 314, 1042
HphI	GGTGA	3 cut(s)	35, 647, 1031
Hpy166II	GTNNAC	4 cut(s)	233, 587, 747, 1083
Hpy188I	TCNGA	8 cut(s)	333, 397, 545, 648, 708, 720, 783, 900
Hpy188III	TCNNGA	4 cut(s)	21, 763, 836, 1137
Hpy8I	GTNNAC	4 cut(s)	233, 587, 747, 1083
Hpy99I	CGWCG	2 cut(s)	168, 1061
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4IV	ACGT	1 cut(s)	1059
HpyCH4V	TGCA	4 cut(s)	521, 602, 629, 1020
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 167, 319, 446, 659, 668, 1042
HpyF3I	CTNAG	6 cut(s)	98, 117, 269, 432, 723, 897
HpySE526I	ACGT	1 cut(s)	1059
Hsp92II	CATG	4 cut(s)	263, 306, 560, 1140
HspAI	GCGC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
LmnI	GCTCC	3 cut(s)	131, 838, 937
Lsp1109I	GCAGC	3 cut(s)	22, 433, 533
LweI	GCATC	5 cut(s)	286, 611, 628, 638, 1029
MaeI	CTAG	4 cut(s)	39, 408, 624, 740
MaeII	ACGT	1 cut(s)	1059
MaeIII	GTNAC	6 cut(s)	41, 105, 203, 914, 924, 1009
MalI	GATC	7 cut(s)	77, 335, 399, 512, 756, 780, 1067
MboI	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
MboII	GAAGA	7 cut(s)	56, 298, 364, 955, 974, 1122, 1125
MflI	RGATCY	3 cut(s)	75, 510, 778
MhlI	GDGCHC	2 cut(s)	163, 576
MluCI	AATT	2 cut(s)	468, 681
MmeI	TCCRAC	1 cut(s)	806
MnlI	CCTC	8 cut(s)	16, 427, 575, 661, 769, 906, 928, 1003
MseI	TTAA	1 cut(s)	81
MspI	CCGG	3 cut(s)	201, 314, 1042
MspR9I	CCNGG	2 cut(s)	817, 873
MvaI	CCWGG	2 cut(s)	817, 873
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	7 cut(s)	137, 167, 319, 446, 659, 668, 1042
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
NlaIII	CATG	4 cut(s)	263, 306, 560, 1140
NlaIV	GGNNCC	2 cut(s)	127, 780
NmuCI	GTSAC	2 cut(s)	41, 105
PagI	TCATGA	1 cut(s)	1136
PfeI	GAWTC	3 cut(s)	620, 908, 1127
PkrI	GCNGC	4 cut(s)	37, 448, 523, 661
Psp6I	CCWGG	2 cut(s)	815, 871
PspFI	CCCAGC	1 cut(s)	1045
PspGI	CCWGG	2 cut(s)	815, 871
PspN4I	GGNNCC	2 cut(s)	127, 780
PsuI	RGATCY	3 cut(s)	75, 510, 778
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	4 cut(s)	36, 447, 522, 660
Sau3AI	GATC	7 cut(s)	75, 333, 397, 510, 754, 778, 1065
ScrFI	CCNGG	2 cut(s)	817, 873
SduI	GDGCHC	2 cut(s)	163, 576
SfaNI	GCATC	5 cut(s)	286, 611, 628, 638, 1029
SfcI	CTRYAG	2 cut(s)	135, 672
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	2 cut(s)	468, 681
SsiI	CCGC	5 cut(s)	68, 129, 364, 660, 861
SspMI	CTAG	4 cut(s)	39, 408, 624, 740
StyD4I	CCNGG	2 cut(s)	815, 871
TaaI	ACNGT	1 cut(s)	700
TaiI	ACGT	1 cut(s)	1062
TaqI	TCGA	4 cut(s)	8, 166, 400, 576
TasI	AATT	2 cut(s)	468, 681
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	3 cut(s)	620, 908, 1127
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	4 cut(s)	235, 436, 661, 978
TseFI	GTSAC	2 cut(s)	41, 105
TseI	GCWGC	3 cut(s)	35, 446, 521
Tsp45I	GTSAC	2 cut(s)	41, 105
TspDTI	ATGAA	5 cut(s)	248, 291, 498, 573, 1125
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	4 cut(s)	235, 436, 661, 978
XapI	RAATTY	1 cut(s)	681
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 741
XmiI	GTMKAC	1 cut(s)	586
XspI	CTAG	4 cut(s)	39, 408, 624, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.