Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Reverse (-)

19458244 .. 19466079

Gene Structure 7836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTTCAGCTCTTTTTGCAAGGACTCTTTTGGGTCATCGCCTTTTTCACTCTTCTGCACGCTCTCTCTCTCCAAAGCCCCAAATCCTCACTTCCCTGCTCAATAAAAGATCAGATCTCTTGCGAGCTGACTCTTCCTATACAAAATATAGAGTATCTAGTTTAGTACCTCGTGTTATGGCTTCATCAGTAGCTGGGGCAAGAGCAGATTTTTCAACATCGGCATCTACGAATGAGCCTGTTGTTTCTGTTGATTGGCTTCATGCTAATCTCAAGGAGCCTGACCTTAAGGTTGTGGATGCGTCTTGGTACATGCCTGATGAGCAAAGGAATCCGATTCAAGAGTATCAGGTTGCTCATATTCCTGGTGCCCTTTTCTTTGACGTAGATGGAATATCGGATCGCACAACAAAATTACCACATATGTTACCATCTGAGGAAGCCTTTGCTGCTGCTGTTTCTGCTCTTGGCATTGAGAACAAAGACGATCTAGTTGTGTATGATGGGAAAGGGCTTTTTAGTGCAGCTCGTGTGTGGTGGATGTTCCGAGTGTTTGGCCATGATAGAGTCTGGGTTTTAGATGGAGGCTTGCCAAGATGGCGTGCATCTGGATATGACGTTGAATCTAGTGCTTCTGGTGATGCGATTTTGAAAGCTAGCGCTGCCAGTGAGGCAATAGAGAAAGTATATAAGGGACAGGCAGTTGGTCTAACCACATTTCAGACTAAATTTCAGCCACATCTTGTCTGGAATCTTGAGCAGGTTAAAAAAAATGTTGAGGAAAGAACTCACCAGCATATAGATGCCCGATCAAAGGCCAGATTTGATGGAACTGCATTGGAGCCTCGGAAAGGGATAAGAAGTGGTCACGTACCTGGAAGCAAGTGCATTCCTTTTCCTCAGTTGTTGGATGCTTCAGGCACAGTCTTACCAGCAGACGAGTTGAAAAAAAGATTTGATGAAGAAGGCATCACATTGGACAGCCCTGTTGTTACTTCGTGTGGCACTGGTGTAACTGCTTGCATTCTCGCATTGGGTCTTCATAAACTTGGTAAGCCTGATGTGGCAGTCTATGATGGGTCTTGGACCGAGTGGGGAGCACATTCGGACACACCCGTCGACACTTCCACTTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

379

Amino Acids

41.4

Weight (kDa)

6.46

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	83 - 202	2.6e-13	Rhodanese-like domain
Rhodanese	PF00581	253 - 367	9.9e-13	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1115
Acc36I	ACCTGC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	1119
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	3 cut(s)	168, 311, 873
AfeI	AGCGCT	1 cut(s)	661
AfiI	CCNNNNNNNGG	2 cut(s)	814, 851
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	216, 341, 623, 652, 946
AjnI	CCWGG	2 cut(s)	364, 874
AluBI	AGCT	5 cut(s)	11, 128, 194, 527, 656
AluI	AGCT	5 cut(s)	11, 128, 194, 527, 656
Alw21I	GWGCWC	1 cut(s)	1102
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	661
AoxI	GGCC	2 cut(s)	556, 816
ApeKI	GCWGC	4 cut(s)	449, 452, 524, 662
ApoI	RAATTY	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	1 cut(s)	1086
AsuHPI	GGTGA	2 cut(s)	650, 782
AsuNHI	GCTAGC	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	1086
BaeGI	GKGCMC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	368
BauI	CACGAG	2 cut(s)	171, 528
BbsI	GAAGAC	1 cut(s)	1031
Bbv12I	GWGCWC	1 cut(s)	1102
BbvI	GCAGC	4 cut(s)	436, 439, 536, 649
BccI	CCATC	7 cut(s)	383, 439, 497, 575, 591, 821, 1070
BciT130I	CCWGG	2 cut(s)	366, 876
BfaI	CTAG	4 cut(s)	159, 491, 627, 657
BfoI	RGCGCY	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	751
BglI	GCCNNNNNGGC	2 cut(s)	598, 671
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	4 cut(s)	450, 453, 525, 663
BlsI	GCNGC	4 cut(s)	451, 454, 526, 664
Bme1390I	CCNGG	2 cut(s)	366, 876
Bme18I	GGWCC	1 cut(s)	1086
BmgT120I	GGNCC	1 cut(s)	1086
BmiI	GGNNCC	3 cut(s)	279, 370, 843
BmrFI	CCNGG	2 cut(s)	366, 876
BmsI	GCATC	7 cut(s)	233, 289, 614, 631, 793, 901, 978
BmtI	GCTAGC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	1031
BpuEI	CTTGAG	2 cut(s)	257, 776
BsaAI	YACGTR	1 cut(s)	871
BsaJI	CCNNGG	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	2 cut(s)	814, 851
Bse1I	ACTGG	2 cut(s)	666, 1012
BseBI	CCWGG	2 cut(s)	366, 876
BseDI	CCNNGG	1 cut(s)	845
BseGI	GGATG	3 cut(s)	304, 546, 916
BseLI	CCNNNNNNNGG	2 cut(s)	814, 851
BseMII	CTCAG	2 cut(s)	426, 914
BseNI	ACTGG	2 cut(s)	666, 1012
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	436, 439, 536, 649
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	2 cut(s)	42, 543
BshFI	GGCC	2 cut(s)	558, 818
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	1102
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	2 cut(s)	814, 851
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	2 cut(s)	888, 1023
BsnI	GGCC	2 cut(s)	558, 818
Bsp1286I	GDGCHC	2 cut(s)	373, 1102
Bsp143I	GATC	5 cut(s)	110, 115, 400, 487, 809
BspANI	GGCC	2 cut(s)	558, 818
BspCNI	CTCAG	2 cut(s)	427, 913
BspLI	GGNNCC	3 cut(s)	279, 370, 843
BspMI	ACCTGC	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	660
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	666, 1012
BssECI	CCNNGG	1 cut(s)	845
BssMI	GATC	5 cut(s)	110, 115, 400, 487, 809
BssSI	CACGAG	2 cut(s)	171, 528
Bst2BI	CACGAG	2 cut(s)	171, 528
Bst2UI	CCWGG	2 cut(s)	366, 876
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	2 cut(s)	58, 139
BstAFI	CTTAAG	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	871
BstC8I	GCNNGC	6 cut(s)	61, 126, 590, 603, 658, 1021
BstDEI	CTNAG	2 cut(s)	435, 900
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	304, 546, 916
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	5 cut(s)	113, 118, 403, 490, 812
BstMBI	GATC	5 cut(s)	110, 115, 400, 487, 809
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 322, 449, 461, 598, 662, 671
BstNI	CCWGG	2 cut(s)	366, 876
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	364, 874
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	436, 439, 536, 649
BstV2I	GAAGAC	1 cut(s)	1031
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	558, 818
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	304, 546, 916
BtsIMutI	CAGTG	2 cut(s)	673, 1005
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	6 cut(s)	61, 126, 590, 603, 658, 1021
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	662
Cfr13I	GGNCC	1 cut(s)	1086
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	3 cut(s)	167, 310, 872
CviAII	CATG	3 cut(s)	263, 313, 560
CviQI	GTAC	3 cut(s)	167, 310, 872
DdeI	CTNAG	2 cut(s)	435, 900
DpnI	GATC	5 cut(s)	112, 117, 402, 489, 811
DpnII	GATC	5 cut(s)	110, 115, 400, 487, 809
DrdI	GACNNNNNNGTC	1 cut(s)	1115
DseDI	GACNNNNNNGTC	1 cut(s)	1115
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	58, 139
EarI	CTCTTC	2 cut(s)	58, 139
Eco47I	GGWCC	1 cut(s)	1086
Eco47III	AGCGCT	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	900
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	364, 874
FaeI	CATG	3 cut(s)	266, 316, 563
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	3 cut(s)	262, 312, 559
FauNDI	CATATG	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	1119
Fnu4HI	GCNGC	4 cut(s)	450, 453, 525, 663
FokI	GGATG	3 cut(s)	311, 553, 923
Fsp4HI	GCNGC	4 cut(s)	450, 453, 525, 663
FspBI	CTAG	4 cut(s)	159, 491, 627, 657
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	4 cut(s)	450, 453, 525, 663
GsaI	CCCAGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	558, 818
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	3 cut(s)	266, 316, 563
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HinfI	GANTC	7 cut(s)	25, 131, 331, 337, 567, 623, 751
HphI	GGTGA	2 cut(s)	650, 782
Hpy166II	GTNNAC	1 cut(s)	1120
Hpy188I	TCNGA	8 cut(s)	115, 336, 400, 436, 548, 723, 849, 1108
Hpy188III	TCNNGA	5 cut(s)	341, 609, 748, 755, 1137
Hpy8I	GTNNAC	1 cut(s)	1120
Hpy99I	CGWCG	1 cut(s)	1121
HpyAV	CCTTC	1 cut(s)	959
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	3 cut(s)	384, 618, 870
HpyCH4V	TGCA	7 cut(s)	20, 59, 524, 605, 836, 888, 1023
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 322, 449, 461, 598, 662, 671
HpyF3I	CTNAG	2 cut(s)	435, 900
HpySE526I	ACGT	3 cut(s)	384, 618, 870
Hsp92II	CATG	3 cut(s)	266, 316, 563
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	110, 115, 400, 487, 809
LmnI	GCTCC	3 cut(s)	277, 841, 1097
Lsp1109I	GCAGC	4 cut(s)	436, 439, 536, 649
LweI	GCATC	7 cut(s)	233, 289, 614, 631, 793, 901, 978
MaeI	CTAG	4 cut(s)	159, 491, 627, 657
MaeII	ACGT	3 cut(s)	384, 618, 870
MaeIII	GTNAC	4 cut(s)	426, 866, 991, 1012
MalI	GATC	5 cut(s)	112, 117, 402, 489, 811
MboI	GATC	5 cut(s)	110, 115, 400, 487, 809
MboII	GAAGA	5 cut(s)	45, 126, 974, 1031, 1125
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	373, 1102
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	2 cut(s)	413, 728
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	3 cut(s)	19, 125, 576
MmeI	TCCRAC	1 cut(s)	888
MnlI	CCTC	8 cut(s)	98, 180, 430, 578, 664, 772, 855, 909
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	2 cut(s)	288, 765
MslI	CAYNNNNRTG	1 cut(s)	801
Msp20I	TGGCCA	1 cut(s)	558
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	366, 876
Mva1269I	GAATGC	2 cut(s)	888, 1023
MvaI	CCWGG	2 cut(s)	366, 876
MwoI	GCNNNNNNNGC	7 cut(s)	17, 322, 449, 461, 598, 662, 671
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	5 cut(s)	110, 115, 400, 487, 809
NheI	GCTAGC	1 cut(s)	656
NlaIII	CATG	3 cut(s)	266, 316, 563
NlaIV	GGNNCC	3 cut(s)	279, 370, 843
NmuCI	GTSAC	1 cut(s)	866
NspI	RCATGY	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	2 cut(s)	888, 1023
PfeI	GAWTC	4 cut(s)	331, 337, 623, 751
PkrI	GCNGC	4 cut(s)	451, 454, 526, 664
PleI	GAGTC	3 cut(s)	19, 125, 575
PpsI	GAGTC	3 cut(s)	19, 125, 575
Ppu21I	YACGTR	1 cut(s)	871
Psp6I	CCWGG	2 cut(s)	364, 874
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	364, 874
PspN4I	GGNNCC	3 cut(s)	279, 370, 843
PspPI	GGNCC	1 cut(s)	1086
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	3 cut(s)	168, 311, 873
RsaNI	GTAC	3 cut(s)	167, 310, 872
RseI	CAYNNNNRTG	1 cut(s)	801
SalI	GTCGAC	1 cut(s)	1118
SaqAI	TTAA	2 cut(s)	288, 765
SatI	GCNGC	4 cut(s)	450, 453, 525, 663
Sau3AI	GATC	5 cut(s)	110, 115, 400, 487, 809
Sau96I	GGNCC	1 cut(s)	1086
SchI	GAGTC	3 cut(s)	19, 125, 576
ScrFI	CCNGG	2 cut(s)	366, 876
SduI	GDGCHC	2 cut(s)	373, 1102
SfaNI	GCATC	7 cut(s)	233, 289, 614, 631, 793, 901, 978
SinI	GGWCC	1 cut(s)	1086
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	3 cut(s)	272, 287, 755
SmoI	CTYRAG	3 cut(s)	272, 287, 755
Sse9I	AATT	2 cut(s)	413, 728
SspMI	CTAG	4 cut(s)	159, 491, 627, 657
StyD4I	CCNGG	2 cut(s)	364, 874
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	3 cut(s)	387, 621, 873
TaqI	TCGA	1 cut(s)	1119
TaqII	GACCGA	1 cut(s)	1103
TasI	AATT	2 cut(s)	413, 728
TfiI	GAWTC	4 cut(s)	331, 337, 623, 751
Tru1I	TTAA	2 cut(s)	288, 765
Tru9I	TTAA	2 cut(s)	288, 765
TscAI	CASTG	2 cut(s)	673, 1012
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	4 cut(s)	449, 452, 524, 662
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	4 cut(s)	174, 251, 975, 1031
TspRI	CASTG	2 cut(s)	673, 1012
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	1086
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	744
XmiI	GTMKAC	1 cut(s)	1119
XspI	CTAG	4 cut(s)	159, 491, 627, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.