Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005699.1

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Forward (+)

7413 .. 14113

Gene Structure 6701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005699.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ctgctcaataaaagatcagatctcttgcgagctgactcttcctatacaaaatatagagtatctggtttagtacctcgtgttatggcttcatcagtagctggggcaagagcagatttttcaacatcggcatctacgaatgagcctgttgtttctgttgattggcttcatgctaatctcaaggagcctgaccttaaggttgtggatgcgtcttggtacatgcctgatgagcaaaggaatccgattcaagagtatcaggttgctcatattcctggtgcccttttctttgatgtagatggaatatcggatcgcacaacaaaattaccacatatgttaccatctgaggaagcctttgctgctgctgtttctgctcttggcattgagaacaaagacgatctagttgtgtatgatgggaaagggctttttagtgcagctcgtgtgtggtggatgttccgagtgtttggccatgatagagtctgggttttagatggaggcttgccaagatggcgtgcatctggatatgacgttgaatctagtgcttctggtgatgcgattttgaaagctagtgctgccagtgaggcaatagagaaagtatataagggacagccagttggtctaaccacatttcagactaaatttcagccacatcttgtctggaatcttgagcaggttaaaaaaaatgttgaggaaagaactcaccagcatatagatgcccgatcaaaggccagatttgatggaactgcattggagcctcggaaagggataagaagtggtcacgtacctggaagcaagtgcattccttttcctcagttgttggatgcttcagggacagtcttaccagcaggcgagttgaaaaaaagatttgatgaagaaggcatcacattggacagccctgttgttacttcgtgtggcactggtgtaactgcttgcattctcgcattgggtcttcataaacttggtaagcctgatgtggcagtctatgatgggtcttggactgagtggggagcacattcggacacacccgtcgacacttccacttcttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

347

Amino Acids

37.86

Weight (kDa)

5.95

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1019
Acc36I	ACCTGC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	1023
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	3 cut(s)	72, 215, 777
AfiI	CCNNNNNNNGG	2 cut(s)	718, 755
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	120, 245, 527, 556, 850
AjnI	CCWGG	2 cut(s)	268, 778
AluBI	AGCT	4 cut(s)	32, 98, 431, 560
AluI	AGCT	4 cut(s)	32, 98, 431, 560
Alw21I	GWGCWC	1 cut(s)	1006
AlwI	GGATC	1 cut(s)	312
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	460, 720
ApeKI	GCWGC	4 cut(s)	353, 356, 428, 566
ApoI	RAATTY	1 cut(s)	632
AsuHPI	GGTGA	2 cut(s)	554, 686
BaeGI	GKGCMC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	272
BauI	CACGAG	2 cut(s)	75, 432
BbsI	GAAGAC	1 cut(s)	935
Bbv12I	GWGCWC	1 cut(s)	1006
BbvI	GCAGC	4 cut(s)	340, 343, 440, 553
BccI	CCATC	7 cut(s)	287, 343, 401, 479, 495, 725, 974
BciT130I	CCWGG	2 cut(s)	270, 780
BfaI	CTAG	3 cut(s)	395, 531, 561
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	655
BglI	GCCNNNNNGGC	2 cut(s)	502, 575
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	354, 357, 429, 567
BlsI	GCNGC	4 cut(s)	355, 358, 430, 568
Bme1390I	CCNGG	2 cut(s)	270, 780
BmiI	GGNNCC	3 cut(s)	183, 274, 747
BmrFI	CCNGG	2 cut(s)	270, 780
BmsI	GCATC	7 cut(s)	137, 193, 518, 535, 697, 805, 882
BpiI	GAAGAC	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	161, 680
BsaAI	YACGTR	1 cut(s)	775
BsaJI	CCNNGG	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	2 cut(s)	718, 755
Bse1I	ACTGG	3 cut(s)	570, 605, 916
BseBI	CCWGG	2 cut(s)	270, 780
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	3 cut(s)	208, 450, 820
BseLI	CCNNNNNNNGG	2 cut(s)	718, 755
BseMII	CTCAG	3 cut(s)	330, 818, 984
BseNI	ACTGG	3 cut(s)	570, 605, 916
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	340, 343, 440, 553
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	462, 722
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	1006
BslFI	GGGAC	2 cut(s)	612, 838
BslI	CCNNNNNNNGG	2 cut(s)	718, 755
BsmFI	GGGAC	2 cut(s)	612, 838
BsmI	GAATGC	2 cut(s)	792, 927
BsnI	GGCC	2 cut(s)	462, 722
Bsp1286I	GDGCHC	2 cut(s)	277, 1006
Bsp143I	GATC	5 cut(s)	14, 19, 304, 391, 713
BspANI	GGCC	2 cut(s)	462, 722
BspCNI	CTCAG	3 cut(s)	331, 817, 985
BspLI	GGNNCC	3 cut(s)	183, 274, 747
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	570, 605, 916
BssECI	CCNNGG	1 cut(s)	749
BssMI	GATC	5 cut(s)	14, 19, 304, 391, 713
BssSI	CACGAG	2 cut(s)	75, 432
Bst2BI	CACGAG	2 cut(s)	75, 432
Bst2UI	CCWGG	2 cut(s)	270, 780
Bst4CI	ACNGT	1 cut(s)	829
Bst6I	CTCTTC	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	775
BstC8I	GCNNGC	5 cut(s)	30, 494, 507, 841, 925
BstDEI	CTNAG	3 cut(s)	339, 804, 993
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	208, 450, 820
BstKTI	GATC	5 cut(s)	17, 22, 307, 394, 716
BstMBI	GATC	5 cut(s)	14, 19, 304, 391, 713
BstMWI	GCNNNNNNNGC	6 cut(s)	226, 353, 365, 502, 566, 575
BstNI	CCWGG	2 cut(s)	270, 780
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	268, 778
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	340, 343, 440, 553
BstV2I	GAAGAC	1 cut(s)	935
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	462, 722
BtsCI	GGATG	3 cut(s)	208, 450, 820
BtsIMutI	CAGTG	2 cut(s)	577, 909
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	5 cut(s)	30, 494, 507, 841, 925
CaiI	CAGNNNCTG	1 cut(s)	98
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	71, 214, 776
CviAII	CATG	3 cut(s)	167, 217, 464
CviQI	GTAC	3 cut(s)	71, 214, 776
DdeI	CTNAG	3 cut(s)	339, 804, 993
DpnI	GATC	5 cut(s)	16, 21, 306, 393, 715
DpnII	GATC	5 cut(s)	14, 19, 304, 391, 713
DrdI	GACNNNNNNGTC	1 cut(s)	1019
DseDI	GACNNNNNNGTC	1 cut(s)	1019
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	804
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoRII	CCWGG	2 cut(s)	268, 778
FaeI	CATG	3 cut(s)	170, 220, 467
FaqI	GGGAC	2 cut(s)	612, 838
FatI	CATG	3 cut(s)	166, 216, 463
FauNDI	CATATG	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	4 cut(s)	354, 357, 429, 567
FokI	GGATG	3 cut(s)	215, 457, 827
Fsp4HI	GCNGC	4 cut(s)	354, 357, 429, 567
FspBI	CTAG	3 cut(s)	395, 531, 561
GluI	GCNGC	4 cut(s)	354, 357, 429, 567
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	462, 722
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	170, 220, 467
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HinfI	GANTC	6 cut(s)	35, 235, 241, 471, 527, 655
HphI	GGTGA	2 cut(s)	554, 686
Hpy166II	GTNNAC	1 cut(s)	1024
Hpy188I	TCNGA	8 cut(s)	19, 240, 304, 340, 452, 627, 753, 1012
Hpy188III	TCNNGA	5 cut(s)	245, 513, 652, 659, 1041
Hpy8I	GTNNAC	1 cut(s)	1024
Hpy99I	CGWCG	1 cut(s)	1025
HpyAV	CCTTC	1 cut(s)	863
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4IV	ACGT	2 cut(s)	522, 774
HpyCH4V	TGCA	5 cut(s)	428, 509, 740, 792, 927
HpyF10VI	GCNNNNNNNGC	6 cut(s)	226, 353, 365, 502, 566, 575
HpyF3I	CTNAG	3 cut(s)	339, 804, 993
HpySE526I	ACGT	2 cut(s)	522, 774
Hsp92II	CATG	3 cut(s)	170, 220, 467
Kzo9I	GATC	5 cut(s)	14, 19, 304, 391, 713
LmnI	GCTCC	3 cut(s)	181, 745, 1001
Lsp1109I	GCAGC	4 cut(s)	340, 343, 440, 553
LweI	GCATC	7 cut(s)	137, 193, 518, 535, 697, 805, 882
MaeI	CTAG	3 cut(s)	395, 531, 561
MaeII	ACGT	2 cut(s)	522, 774
MaeIII	GTNAC	4 cut(s)	330, 770, 895, 916
MalI	GATC	5 cut(s)	16, 21, 306, 393, 715
MboI	GATC	5 cut(s)	14, 19, 304, 391, 713
MboII	GAAGA	4 cut(s)	30, 878, 935, 1029
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	277, 1006
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	2 cut(s)	317, 632
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	29, 480
MmeI	TCCRAC	1 cut(s)	792
MnlI	CCTC	7 cut(s)	84, 334, 482, 568, 676, 759, 813
Mox20I	TGGCCA	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	2 cut(s)	192, 669
MslI	CAYNNNNRTG	1 cut(s)	705
Msp20I	TGGCCA	1 cut(s)	462
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	270, 780
Mva1269I	GAATGC	2 cut(s)	792, 927
MvaI	CCWGG	2 cut(s)	270, 780
MwoI	GCNNNNNNNGC	6 cut(s)	226, 353, 365, 502, 566, 575
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	5 cut(s)	14, 19, 304, 391, 713
NlaIII	CATG	3 cut(s)	170, 220, 467
NlaIV	GGNNCC	3 cut(s)	183, 274, 747
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	2 cut(s)	792, 927
PfeI	GAWTC	4 cut(s)	235, 241, 527, 655
PkrI	GCNGC	4 cut(s)	355, 358, 430, 568
PleI	GAGTC	2 cut(s)	29, 479
PpsI	GAGTC	2 cut(s)	29, 479
Ppu21I	YACGTR	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	268, 778
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	268, 778
PspN4I	GGNNCC	3 cut(s)	183, 274, 747
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	3 cut(s)	72, 215, 777
RsaNI	GTAC	3 cut(s)	71, 214, 776
RseI	CAYNNNNRTG	1 cut(s)	705
SalI	GTCGAC	1 cut(s)	1022
SaqAI	TTAA	2 cut(s)	192, 669
SatI	GCNGC	4 cut(s)	354, 357, 429, 567
Sau3AI	GATC	5 cut(s)	14, 19, 304, 391, 713
SchI	GAGTC	2 cut(s)	29, 480
ScrFI	CCNGG	2 cut(s)	270, 780
SduI	GDGCHC	2 cut(s)	277, 1006
SfaNI	GCATC	7 cut(s)	137, 193, 518, 535, 697, 805, 882
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	3 cut(s)	176, 191, 659
SmoI	CTYRAG	3 cut(s)	176, 191, 659
Sse9I	AATT	2 cut(s)	317, 632
SspMI	CTAG	3 cut(s)	395, 531, 561
StyD4I	CCNGG	2 cut(s)	268, 778
TaaI	ACNGT	1 cut(s)	829
TaiI	ACGT	2 cut(s)	525, 777
TaqI	TCGA	1 cut(s)	1023
TasI	AATT	2 cut(s)	317, 632
TfiI	GAWTC	4 cut(s)	235, 241, 527, 655
Tru1I	TTAA	2 cut(s)	192, 669
Tru9I	TTAA	2 cut(s)	192, 669
TscAI	CASTG	2 cut(s)	577, 916
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	4 cut(s)	353, 356, 428, 566
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	4 cut(s)	78, 155, 879, 935
TspRI	CASTG	2 cut(s)	577, 916
Vha464I	CTTAAG	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648
XmiI	GTMKAC	1 cut(s)	1023
XspI	CTAG	3 cut(s)	395, 531, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.