Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Forward (+)

36212635 .. 36218086

Gene Structure 5452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1228000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCTTCATCTCTTTTCGCAAGGACTCTCCTGGGTCATCGCCTTTTCCACTCTTCCTCTCACTCTCTCTGCCAAAAGCCCCAATTTTTCACCTCCCTCTTCAATAAGGGAACAGAACACTTTCAAGCTGACCCTACCTATAGAAGATATAGAACATCTGCCTGGGTTCCTCGTGTTATGGCTTCATCAGTAGCTGGCGCAAGAGCTGATTTTTCAACACAATCTGTGTCGACAAAAGAGCCTGTTGTTTCTGTTGATTGGCTCCATGCTAACCTCAAAGAGCCTGATCTGAAGGTGCTAGATGCATCTTGGTATATGCCTGATGAGCAAAGGAATCCAATTCAAGAGTATCAGGTTGCTCACATTCCTGGTGCACTTTTCTTTGACGTGGATGGAATATCAGATCGCAATACTAAATTACCGCATATGTTACCATCAGAGGAAGCCTTTGCTGCTGCTGTTTCTGCTCTTGGCATTGAGAACAAAGATGATCTTGTTGTGTATGATGGAAAAGGGATCTTTAGTGCAGCTCGTGTGTGGTGGATGTTCCGAGTATTTGGCCATGACAGAGTTTGGGTTTTAGATGGAGGCCTGCCAAGGTGGCGTGCATCTGGATTTGATGTTGAATCTAGTGCCTCTGGTGATGCAATTTTGAAAGCTAGTGCTGCCAGTGAGGCAATAGAGAAAATATACAAGGGACAAGCAGTTGGGCCCACCACATTTGAGACTAAGTTTCAGCCACATCTTGTCTGGACTCTTGATCAGGTTAGAAAAAATGTTGAGGAAGGAAGTCACCAACATATAGATGCCCGATCAAAGGCCAGGTTCGATGGAACTGCATTAGAGCCTCGAAAAGGCATAAGAAGTGGTCATGTGCCTGGAAGCAAGTGCATTCCTTTTCCACAGTTGTTGGATTCTTCAGCGACACTCTTACCAGCAGATAAGCTGAAAGCCCGATTTGATGAAGAAGGTATCTCCTTGGAAAGCCCTGTCGTTACTTCATGTGGTACTGGTGTGACAGCTTGCATTCTTGCATTGGGCCTTCATCGACTTGGTAAGCCTGATGTACCAGTCTATGATGGATCGTGGACTGAATGGGGAGCGCAGTCCGACACACCCGTCGACAGTTCTACAGAAAGTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

382

Amino Acids

41.89

Weight (kDa)

6.12

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	84 - 203	2e-13	Rhodanese-like domain
Rhodanese	PF00581	252 - 368	6.5e-12	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1118
AccI	GTMKAC	2 cut(s)	230, 1122
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	2 cut(s)	524, 1090
AcoI	YGGCCR	1 cut(s)	559
AcuI	CTGAAG	2 cut(s)	311, 903
AfaI	GTAC	2 cut(s)	1009, 1068
AfiI	CCNNNNNNNGG	2 cut(s)	817, 854
AgsI	TTSAA	6 cut(s)	103, 125, 216, 344, 626, 655
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	5 cut(s)	30, 161, 367, 821, 877
AluBI	AGCT	7 cut(s)	128, 194, 206, 530, 659, 946, 1022
AluI	AGCT	7 cut(s)	128, 194, 206, 530, 659, 946, 1022
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	719
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	524, 1090
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	5 cut(s)	559, 589, 710, 819, 1039
ApaI	GGGCCC	1 cut(s)	714
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	4 cut(s)	452, 455, 527, 665
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	200, 1105
AspS9I	GGNCC	3 cut(s)	710, 711, 1039
AsuHPI	GGTGA	3 cut(s)	82, 653, 785
BaeGI	GKGCMC	2 cut(s)	376, 714
BaeI	ACNNNNGTAYC	2 cut(s)	999, 1032
BalI	TGGCCA	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	714
BauI	CACGAG	2 cut(s)	171, 531
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	4 cut(s)	439, 442, 539, 652
BccI	CCATC	6 cut(s)	386, 442, 500, 578, 824, 1073
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	5 cut(s)	32, 163, 369, 823, 879
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	3 cut(s)	299, 630, 660
BfmI	CTRYAG	2 cut(s)	139, 1131
BglI	GCCNNNNNGGC	2 cut(s)	601, 674
BisI	GCNGC	4 cut(s)	453, 456, 528, 666
BlsI	GCNGC	4 cut(s)	454, 457, 529, 667
Bme1390I	CCNGG	5 cut(s)	32, 163, 369, 823, 879
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	710, 711, 1039
BmiI	GGNNCC	3 cut(s)	168, 263, 712
BmrFI	CCNGG	5 cut(s)	32, 163, 369, 823, 879
BmsI	GCATC	5 cut(s)	292, 314, 617, 634, 796
BsaJI	CCNNGG	4 cut(s)	31, 162, 596, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	817, 854
Bse1I	ACTGG	3 cut(s)	669, 1015, 1070
BseBI	CCWGG	5 cut(s)	32, 163, 369, 823, 879
BseDI	CCNNGG	4 cut(s)	31, 162, 596, 978
BseGI	GGATG	2 cut(s)	397, 549
BseLI	CCNNNNNNNGG	2 cut(s)	817, 854
BseNI	ACTGG	3 cut(s)	669, 1015, 1070
BseSI	GKGCMC	2 cut(s)	376, 714
BseXI	GCAGC	4 cut(s)	439, 442, 539, 652
BsgI	GTGCAG	1 cut(s)	546
BshFI	GGCC	5 cut(s)	561, 591, 712, 821, 1041
BsiHKAI	GWGCWC	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	2 cut(s)	817, 854
BsmAI	GTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	711
BsmI	GAATGC	2 cut(s)	891, 1026
BsnI	GGCC	5 cut(s)	561, 591, 712, 821, 1041
Bsp120I	GGGCCC	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	376, 714
Bsp143I	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	5 cut(s)	561, 591, 712, 821, 1041
BspLI	GGNNCC	3 cut(s)	168, 263, 712
BspPI	GGATC	2 cut(s)	524, 1090
BsrI	ACTGG	3 cut(s)	669, 1015, 1070
BssECI	CCNNGG	4 cut(s)	31, 162, 596, 978
BssMI	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
BssSI	CACGAG	2 cut(s)	171, 531
BssT1I	CCWWGG	2 cut(s)	596, 978
Bst2BI	CACGAG	2 cut(s)	171, 531
Bst2UI	CCWGG	5 cut(s)	32, 163, 369, 823, 879
Bst4CI	ACNGT	2 cut(s)	906, 1127
Bst6I	CTCTTC	2 cut(s)	58, 104
BstC8I	GCNNGC	4 cut(s)	196, 593, 606, 1024
BstDEI	CTNAG	1 cut(s)	729
BstENI	CCTNNNNNAGG	1 cut(s)	852
BstF5I	GGATG	2 cut(s)	397, 549
BstHHI	GCGC	2 cut(s)	200, 1105
BstKTI	GATC	7 cut(s)	289, 406, 493, 519, 763, 815, 1085
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
BstMWI	GCNNNNNNNGC	6 cut(s)	325, 452, 464, 601, 665, 674
BstNI	CCWGG	5 cut(s)	32, 163, 369, 823, 879
BstSCI	CCNGG	5 cut(s)	30, 161, 367, 821, 877
BstSFI	CTRYAG	2 cut(s)	139, 1131
BstSLI	GKGCMC	2 cut(s)	376, 714
BstV1I	GCAGC	4 cut(s)	439, 442, 539, 652
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BsuRI	GGCC	5 cut(s)	561, 591, 712, 821, 1041
BtgZI	GCGATG	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	397, 549
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	4 cut(s)	196, 593, 606, 1024
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	2 cut(s)	200, 1105
Cfr13I	GGNCC	3 cut(s)	710, 711, 1039
Csp6I	GTAC	2 cut(s)	1008, 1067
CspCI	CAANNNNNGTGG	4 cut(s)	703, 738, 891, 926
CviAII	CATG	4 cut(s)	266, 563, 872, 1002
CviQI	GTAC	2 cut(s)	1008, 1067
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	7 cut(s)	288, 405, 492, 518, 762, 814, 1084
DpnII	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
DrdI	GACNNNNNNGTC	1 cut(s)	1118
DseDI	GACNNNNNNGTC	1 cut(s)	1118
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	58, 104
EarI	CTCTTC	2 cut(s)	58, 104
Eco130I	CCWWGG	2 cut(s)	596, 978
Eco147I	AGGCCT	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	714
Eco57I	CTGAAG	2 cut(s)	311, 903
EcoNI	CCTNNNNNAGG	1 cut(s)	852
EcoRII	CCWGG	5 cut(s)	30, 161, 367, 821, 877
EcoT14I	CCWWGG	2 cut(s)	596, 978
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	2 cut(s)	596, 978
FaeI	CATG	4 cut(s)	269, 566, 875, 1005
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	4 cut(s)	265, 562, 871, 1001
FauNDI	CATATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	2 cut(s)	230, 1122
Fnu4HI	GCNGC	4 cut(s)	453, 456, 528, 666
FokI	GGATG	2 cut(s)	404, 556
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	4 cut(s)	453, 456, 528, 666
FspBI	CTAG	3 cut(s)	299, 630, 660
GlaI	GCGC	2 cut(s)	199, 1104
GluI	GCNGC	4 cut(s)	453, 456, 528, 666
HaeIII	GGCC	5 cut(s)	561, 591, 712, 821, 1041
HhaI	GCGC	2 cut(s)	200, 1105
Hin1II	CATG	4 cut(s)	269, 566, 875, 1005
Hin6I	GCGC	2 cut(s)	198, 1103
HinP1I	GCGC	2 cut(s)	198, 1103
HincII	GTYRAC	2 cut(s)	231, 1123
HindII	GTYRAC	2 cut(s)	231, 1123
HinfI	GANTC	5 cut(s)	25, 334, 626, 754, 914
HphI	GGTGA	3 cut(s)	82, 653, 785
Hpy166II	GTNNAC	4 cut(s)	231, 374, 1089, 1123
Hpy188I	TCNGA	5 cut(s)	291, 403, 439, 551, 1111
Hpy188III	TCNNGA	4 cut(s)	344, 612, 751, 758
Hpy8I	GTNNAC	4 cut(s)	231, 374, 1089, 1123
Hpy99I	CGWCG	1 cut(s)	1124
HpyAV	CCTTC	4 cut(s)	286, 779, 962, 1052
HpyCH4III	ACNGT	2 cut(s)	906, 1127
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	9 cut(s)	305, 374, 527, 608, 647, 839, 891, 1026, 1034
HpyF10VI	GCNNNNNNNGC	6 cut(s)	325, 452, 464, 601, 665, 674
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	269, 566, 875, 1005
HspAI	GCGC	2 cut(s)	198, 1103
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
LmnI	GCTCC	2 cut(s)	267, 1100
Lsp1109I	GCAGC	4 cut(s)	439, 442, 539, 652
LweI	GCATC	5 cut(s)	292, 314, 617, 634, 796
MaeI	CTAG	3 cut(s)	299, 630, 660
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	429, 791, 994, 1015
MalI	GATC	7 cut(s)	288, 405, 492, 518, 762, 814, 1084
MboI	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
MboII	GAAGA	5 cut(s)	45, 91, 156, 909, 977
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	376, 714
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	4 cut(s)	83, 339, 416, 648
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	2 cut(s)	19, 748
MmeI	TCCRAC	2 cut(s)	891, 1134
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	804
Msp20I	TGGCCA	1 cut(s)	561
MspR9I	CCNGG	5 cut(s)	32, 163, 369, 823, 879
Mva1269I	GAATGC	2 cut(s)	891, 1026
MvaI	CCWGG	5 cut(s)	32, 163, 369, 823, 879
MwoI	GCNNNNNNNGC	6 cut(s)	325, 452, 464, 601, 665, 674
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
NlaIII	CATG	4 cut(s)	269, 566, 875, 1005
NlaIV	GGNNCC	3 cut(s)	168, 263, 712
NmuCI	GTSAC	2 cut(s)	791, 1015
NsiI	ATGCAT	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	591
PctI	GAATGC	2 cut(s)	891, 1026
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	334, 626, 914
PkrI	GCNGC	4 cut(s)	454, 457, 529, 667
PleI	GAGTC	2 cut(s)	19, 748
PpsI	GAGTC	2 cut(s)	19, 748
Psp6I	CCWGG	5 cut(s)	30, 161, 367, 821, 877
PspGI	CCWGG	5 cut(s)	30, 161, 367, 821, 877
PspN4I	GGNNCC	3 cut(s)	168, 263, 712
PspOMI	GGGCCC	1 cut(s)	710
PspPI	GGNCC	3 cut(s)	710, 711, 1039
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	2 cut(s)	1009, 1068
RsaNI	GTAC	2 cut(s)	1008, 1067
RseI	CAYNNNNRTG	1 cut(s)	804
SalI	GTCGAC	2 cut(s)	229, 1121
SatI	GCNGC	4 cut(s)	453, 456, 528, 666
Sau3AI	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
Sau96I	GGNCC	3 cut(s)	710, 711, 1039
SchI	GAGTC	2 cut(s)	19, 748
ScrFI	CCNGG	5 cut(s)	32, 163, 369, 823, 879
SduI	GDGCHC	2 cut(s)	376, 714
SfaNI	GCATC	5 cut(s)	292, 314, 617, 634, 796
SfcI	CTRYAG	2 cut(s)	139, 1131
SmiMI	CAYNNNNRTG	1 cut(s)	804
Sse9I	AATT	4 cut(s)	83, 339, 416, 648
SseBI	AGGCCT	1 cut(s)	591
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	3 cut(s)	299, 630, 660
StuI	AGGCCT	1 cut(s)	591
StyD4I	CCNGG	5 cut(s)	30, 161, 367, 821, 877
StyI	CCWWGG	2 cut(s)	596, 978
TaaI	ACNGT	2 cut(s)	906, 1127
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	5 cut(s)	230, 828, 850, 1048, 1122
TasI	AATT	4 cut(s)	83, 339, 416, 648
TfiI	GAWTC	3 cut(s)	334, 626, 914
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	791, 1015
TseI	GCWGC	4 cut(s)	452, 455, 527, 665
Tsp45I	GTSAC	2 cut(s)	791, 1015
TspDTI	ATGAA	4 cut(s)	174, 978, 990, 1034
TspRI	CASTG	1 cut(s)	676
VneI	GTGCAC	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	747
XmiI	GTMKAC	2 cut(s)	230, 1122
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	3 cut(s)	299, 630, 660
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.