Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Forward (+)

30786132 .. 30791535

Gene Structure 5404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1208500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTTCATCTCTTTTCGCAAGGACTCTCCTGGGTCATCGCCTTTTCCACTCTTCCTCTCACTCTCTCTGCCAAAAGCCCCAGTTTTTCACTTCCCTCGTCCACGGAACAGAATTCTTACGAGCTAAACCTGCCTATACGAAATATAGAACATCTGCCTGGGTTCCTCATGTTATGGCTTCATCAGTAGCTGGCACAAGAGCTGATTTTTCAACACAATCTGTGTCTACAAATGAGCCTGTTGTTTCTGTTGATTGGCTCCATGCTAACCTCAAAGAGCCTGATCTGAAGGTGCTAGATGCGTCTTGGTACATGCCCGATGAGCAAAGGAATCCAATTCAAGAGTATCAGGTTGCTCACATTCCTGGTGCACTTTTCTTTGACGTAGATGGAATTTCAGATCGCAATACAAAATTACCGCATATGTTACCATCAGAGGAAGCATTTGCTGCTGCTGTTTCTGCTCTTGGCATTGAGAACAAAGATGATCTAGTTGTGTATGATGGAAAAGGGATCTTTAGTGCAGCTCGTGTATGGTGGATGTTCCGAGTATTTGGCCATGACAGAGTCTGGGTTTTAGATGGAGGCCTGCCAAGATGGCGTGCATCTGGATATGATGTTGAATCTAGTGCCTCTGGTGATGCAATTTTGAAAGCTAGTGCTGCCAGTGAGGCAATAGAGAAAATATACAAGGGACAAGCAGTTGGGCCCACCACATTTCAGACTAAGTTTCAGCCACACCTTGTCTGGACTCTTGATCAGGTTAGAAAAAATGTTGAGCAAGGAACTCACCAGCTTATAGATGCCAGATCAAAGGCCAGGTTCGATGGAACTACATTAGAGCCTCGGAAAGGGATAAGAAGTGGTCATGTACCTGGAAGCAAGTGCATTCCTTTTCCTCAGTTGTTGGATTCTTCAGGGACACTCTTACCAGCAGATAAGCTGAAAGCCCGATTTGACAAAGAAGGCATCTCCTTGGAAAGCCCTGCCGTAACTTCATGTGGTACTGGTGTAACAGCTTGTATTCTCGCATTGGGTCTTCATCGACTTGGTAAGCCTGAGGTACCAGTCTATGACGGATCTTGGACTGAATGGGGTGCGCAGCCCGACACACCCATCGACAGTTCTACAGAAAGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

381

Amino Acids

41.69

Weight (kDa)

6.5

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	83 - 202	1.9e-13	Rhodanese-like domain
Rhodanese	PF00581	251 - 367	8.2e-12	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1101
Acc36I	ACCTGC	1 cut(s)	139
Acc65I	GGTACC	1 cut(s)	1063
AccB1I	GGYRCC	1 cut(s)	1063
AccI	GTMKAC	1 cut(s)	227
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	521, 1087
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	2 cut(s)	113, 393
AcuI	CTGAAG	2 cut(s)	308, 900
AfaI	GTAC	4 cut(s)	311, 873, 1006, 1065
AfiI	CCNNNNNNNGG	1 cut(s)	851
AgsI	TTSAA	4 cut(s)	213, 341, 623, 652
AjnI	CCWGG	5 cut(s)	30, 158, 364, 818, 874
AluBI	AGCT	8 cut(s)	125, 191, 203, 527, 656, 796, 943, 1019
AluI	AGCT	8 cut(s)	125, 191, 203, 527, 656, 796, 943, 1019
Alw21I	GWGCWC	1 cut(s)	373
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	521, 1087
AlwNI	CAGNNNCTG	2 cut(s)	191, 570
AoxI	GGCC	4 cut(s)	556, 586, 707, 816
ApaI	GGGCCC	1 cut(s)	711
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	5 cut(s)	449, 452, 524, 662, 1102
ApoI	RAATTY	2 cut(s)	113, 393
Asp718I	GGTACC	1 cut(s)	1063
AspLEI	GCGC	1 cut(s)	1102
AspS9I	GGNCC	2 cut(s)	707, 708
AsuHPI	GGTGA	2 cut(s)	650, 782
AxyI	CCTNAGG	1 cut(s)	1059
BaeGI	GKGCMC	2 cut(s)	373, 711
BaeI	ACNNNNGTAYC	2 cut(s)	996, 1029
BalI	TGGCCA	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	1063
BanII	GRGCYC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	1031
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	5 cut(s)	436, 439, 536, 649, 1114
BccI	CCATC	7 cut(s)	383, 439, 497, 575, 591, 821, 1124
BceAI	ACGGC	1 cut(s)	974
BciT130I	CCWGG	5 cut(s)	32, 160, 366, 820, 876
BclI	TGATCA	1 cut(s)	757
BfaI	CTAG	4 cut(s)	296, 491, 627, 657
BfmI	CTRYAG	1 cut(s)	1128
BfuAI	ACCTGC	1 cut(s)	139
BglI	GCCNNNNNGGC	2 cut(s)	598, 671
BisI	GCNGC	5 cut(s)	450, 453, 525, 663, 1103
BlsI	GCNGC	5 cut(s)	451, 454, 526, 664, 1104
Bme1390I	CCNGG	5 cut(s)	32, 160, 366, 820, 876
BmgT120I	GGNCC	2 cut(s)	707, 708
BmiI	GGNNCC	4 cut(s)	165, 260, 709, 1065
BmrFI	CCNGG	5 cut(s)	32, 160, 366, 820, 876
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	5 cut(s)	289, 614, 631, 793, 978
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	1031
BsaJI	CCNNGG	5 cut(s)	31, 103, 159, 845, 975
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	4 cut(s)	82, 666, 1012, 1067
Bse21I	CCTNAGG	1 cut(s)	1059
BseBI	CCWGG	5 cut(s)	32, 160, 366, 820, 876
BseDI	CCNNGG	5 cut(s)	31, 103, 159, 845, 975
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMII	CTCAG	2 cut(s)	914, 1050
BseNI	ACTGG	4 cut(s)	82, 666, 1012, 1067
BseSI	GKGCMC	2 cut(s)	373, 711
BseXI	GCAGC	5 cut(s)	436, 439, 536, 649, 1114
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	4 cut(s)	558, 588, 709, 818
BshNI	GGYRCC	1 cut(s)	1063
BsiHKAI	GWGCWC	1 cut(s)	373
BslFI	GGGAC	2 cut(s)	708, 934
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmFI	GGGAC	2 cut(s)	708, 934
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	4 cut(s)	558, 588, 709, 818
Bsp120I	GGGCCC	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	373, 711
Bsp143I	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	4 cut(s)	558, 588, 709, 818
BspCNI	CTCAG	2 cut(s)	913, 1051
BspLI	GGNNCC	4 cut(s)	165, 260, 709, 1065
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	521, 1087
BspT107I	GGYRCC	1 cut(s)	1063
BsrI	ACTGG	4 cut(s)	82, 666, 1012, 1067
BssECI	CCNNGG	5 cut(s)	31, 103, 159, 845, 975
BssMI	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	975
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	5 cut(s)	32, 160, 366, 820, 876
Bst4CI	ACNGT	1 cut(s)	1124
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	3 cut(s)	193, 590, 603
BstDEI	CTNAG	3 cut(s)	726, 900, 1059
BstDSI	CCRYGG	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	1102
BstKTI	GATC	7 cut(s)	286, 403, 490, 516, 760, 812, 1082
BstMBI	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 322, 449, 461, 598, 662, 671
BstNI	CCWGG	5 cut(s)	32, 160, 366, 820, 876
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	5 cut(s)	30, 158, 364, 818, 874
BstSFI	CTRYAG	1 cut(s)	1128
BstSLI	GKGCMC	2 cut(s)	373, 711
BstV1I	GCAGC	5 cut(s)	436, 439, 536, 649, 1114
BstV2I	GAAGAC	1 cut(s)	1031
BstX2I	RGATCY	2 cut(s)	513, 1079
BstYI	RGATCY	2 cut(s)	513, 1079
Bsu36I	CCTNAGG	1 cut(s)	1059
BsuRI	GGCC	4 cut(s)	558, 588, 709, 818
BtgI	CCRYGG	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	673
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	3 cut(s)	193, 590, 603
CaiI	CAGNNNCTG	2 cut(s)	191, 570
CfoI	GCGC	1 cut(s)	1102
Cfr13I	GGNCC	2 cut(s)	707, 708
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	4 cut(s)	310, 872, 1005, 1064
CviAII	CATG	6 cut(s)	170, 263, 313, 560, 869, 999
CviQI	GTAC	4 cut(s)	310, 872, 1005, 1064
DdeI	CTNAG	3 cut(s)	726, 900, 1059
DpnI	GATC	7 cut(s)	285, 402, 489, 515, 759, 811, 1081
DpnII	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	975
Eco147I	AGGCCT	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	711
Eco57I	CTGAAG	2 cut(s)	308, 900
Eco81I	CCTNAGG	1 cut(s)	1059
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	5 cut(s)	30, 158, 364, 818, 874
EcoT14I	CCWWGG	1 cut(s)	975
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	975
FaeI	CATG	6 cut(s)	173, 266, 316, 563, 872, 1002
FaqI	GGGAC	2 cut(s)	708, 934
FatI	CATG	6 cut(s)	169, 262, 312, 559, 868, 998
FauNDI	CATATG	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	757
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	5 cut(s)	450, 453, 525, 663, 1103
FokI	GGATG	1 cut(s)	553
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	5 cut(s)	450, 453, 525, 663, 1103
FspBI	CTAG	4 cut(s)	296, 491, 627, 657
FspI	TGCGCA	1 cut(s)	1101
GlaI	GCGC	1 cut(s)	1101
GluI	GCNGC	5 cut(s)	450, 453, 525, 663, 1103
HaeIII	GGCC	4 cut(s)	558, 588, 709, 818
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	1102
Hin1II	CATG	6 cut(s)	173, 266, 316, 563, 872, 1002
Hin6I	GCGC	1 cut(s)	1100
HinP1I	GCGC	1 cut(s)	1100
HinfI	GANTC	6 cut(s)	25, 331, 567, 623, 751, 911
HphI	GGTGA	2 cut(s)	650, 782
Hpy166II	GTNNAC	3 cut(s)	103, 228, 371
Hpy188I	TCNGA	6 cut(s)	288, 400, 436, 548, 723, 849
Hpy188III	TCNNGA	4 cut(s)	341, 609, 748, 755
Hpy8I	GTNNAC	3 cut(s)	103, 228, 371
HpyAV	CCTTC	2 cut(s)	283, 959
HpyCH4III	ACNGT	1 cut(s)	1124
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	5 cut(s)	371, 524, 605, 644, 888
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 322, 449, 461, 598, 662, 671
HpyF3I	CTNAG	3 cut(s)	726, 900, 1059
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	6 cut(s)	173, 266, 316, 563, 872, 1002
HspAI	GCGC	1 cut(s)	1100
KpnI	GGTACC	1 cut(s)	1067
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	5 cut(s)	436, 439, 536, 649, 1114
LweI	GCATC	5 cut(s)	289, 614, 631, 793, 978
MaeI	CTAG	4 cut(s)	296, 491, 627, 657
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	3 cut(s)	426, 991, 1012
MalI	GATC	7 cut(s)	285, 402, 489, 515, 759, 811, 1081
MboI	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
MboII	GAAGA	3 cut(s)	45, 906, 1031
MflI	RGATCY	2 cut(s)	513, 1079
MhlI	GDGCHC	2 cut(s)	373, 711
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	5 cut(s)	113, 336, 393, 413, 645
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	3 cut(s)	19, 576, 745
MmeI	TCCRAC	1 cut(s)	888
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	558
MspR9I	CCNGG	5 cut(s)	32, 160, 366, 820, 876
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	5 cut(s)	32, 160, 366, 820, 876
MwoI	GCNNNNNNNGC	7 cut(s)	131, 322, 449, 461, 598, 662, 671
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
NlaIII	CATG	6 cut(s)	173, 266, 316, 563, 872, 1002
NlaIV	GGNNCC	4 cut(s)	165, 260, 709, 1065
NsbI	TGCGCA	1 cut(s)	1101
NspI	RCATGY	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	588
PctI	GAATGC	1 cut(s)	888
PfeI	GAWTC	3 cut(s)	331, 623, 911
PflFI	GACNNNGTC	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	451, 454, 526, 664, 1104
PleI	GAGTC	3 cut(s)	19, 575, 745
PpsI	GAGTC	3 cut(s)	19, 575, 745
Psp6I	CCWGG	5 cut(s)	30, 158, 364, 818, 874
PspGI	CCWGG	5 cut(s)	30, 158, 364, 818, 874
PspN4I	GGNNCC	4 cut(s)	165, 260, 709, 1065
PspOMI	GGGCCC	1 cut(s)	707
PspPI	GGNCC	2 cut(s)	707, 708
PstNI	CAGNNNCTG	2 cut(s)	191, 570
PsuI	RGATCY	2 cut(s)	513, 1079
PsyI	GACNNNGTC	1 cut(s)	566
RsaI	GTAC	4 cut(s)	311, 873, 1006, 1065
RsaNI	GTAC	4 cut(s)	310, 872, 1005, 1064
SatI	GCNGC	5 cut(s)	450, 453, 525, 663, 1103
Sau3AI	GATC	7 cut(s)	283, 400, 487, 513, 757, 809, 1079
Sau96I	GGNCC	2 cut(s)	707, 708
SchI	GAGTC	3 cut(s)	19, 576, 745
ScrFI	CCNGG	5 cut(s)	32, 160, 366, 820, 876
SduI	GDGCHC	2 cut(s)	373, 711
SfaNI	GCATC	5 cut(s)	289, 614, 631, 793, 978
SfcI	CTRYAG	1 cut(s)	1128
Sse9I	AATT	5 cut(s)	113, 336, 393, 413, 645
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	4 cut(s)	296, 491, 627, 657
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	5 cut(s)	30, 158, 364, 818, 874
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	1 cut(s)	1124
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	825, 1045, 1119
TasI	AATT	5 cut(s)	113, 336, 393, 413, 645
TfiI	GAWTC	3 cut(s)	331, 623, 911
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	5 cut(s)	449, 452, 524, 662, 1102
TspDTI	ATGAA	3 cut(s)	171, 987, 1031
TspGWI	ACGGA	2 cut(s)	120, 1092
TspRI	CASTG	1 cut(s)	673
Tth111I	GACNNNGTC	1 cut(s)	566
VneI	GTGCAC	1 cut(s)	369
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	2 cut(s)	113, 393
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	744
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	4 cut(s)	296, 491, 627, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.