Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000286

Physical Location & Seq

Genomic Coordinates Reverse (-)

7263798 .. 7270852

Gene Structure 7055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0084400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCTTCCAGAATCCGAGGTCCTCCAAGCAATCGTGAAAGCAAATTGACCTGCTGGGCCGACGATAAGCCTCAAATCGTTCCCAAAAAAGATAAGCCTCATGGTAGCAAGGTCAGCGAATCAAAGCGTTCACCTGCTGAGCCTTCATCTGGTGCCAAGGCGGAAGAACCAAAGATTGCCACTTCTGCTCAACAGGGTGTTAAGCGTCTTTTTAGTGCCATCTATGGTGAAATCCCCTTTGAGCTTATAACAACCGATACCATGTCTTACGGTGATCTTTATGACTTTGAGGACAACGTTGAGGATAACTCTAGCTCTCCCGGTTGCAATGAAGAAGAGACGGAGTTTGGGTTTATCCCAGTTGACCGTTATGCTGCTCTAAGGCCCAAGCTTCAGATTGATACTTCGTATTGTGTAGCGGGTCCTCCTGGAGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

146

Amino Acids

15.99

Weight (kDa)

4.97

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13440 AT4G13440
fragaria_vesca	FvH4_3g15000 FvH4_3g15000 FvH4_3g15020 FvH4_4g04740 FvH4_4g04740 FvH4_4g04740 FvH4_4g04760 FvH4_4g04850 FvH4_4g04860 FvH4_4g04900 FvH4_4g04980 FvH4_4g04980 FvH4_4g04990 FvH4_4g04990
malus_domestica	MD05G1227800.v1.1 MD05G1228500.v1.1
prunus_persica	Prupe.1G049600_v2.0.a1 Prupe.1G049700_v2.0.a1 Prupe.1G049800_v2.0.a1 Prupe.1G050000_v2.0.a1 Prupe.1G050100_v2.0.a1 Prupe.4G134500_v2.0.a1 Prupe.6G152600_v2.0.a1
pyrus_communis	pycom13g19680 pycom13g19690
rosa_chinensis	RchiOBHm_Chr4g0395461 RchiOBHm_Chr4g0395551 RchiOBHm_Chr4g0395571 RchiOBHm_Chr4g0395741 RchiOBHm_Chr4g0395751 RchiOBHm_Chr4g0395781 RchiOBHm_Chr4g0395801 RchiOBHm_Chr4g0397571 RchiOBHm_Chr5g0024631 RchiOBHm_Chr5g0024661
rosa_laevigata	RLG00000009594 RLG00000009595 RLG00000009596 RLG00000009607 RLG00000009608 RLG00000009610 RLG00000009612 RLG00000009621 RLG00000032811
rosa_multiflora	Rmu_co8376147.1_g000001 Rmu_sc0000041.1_g000020 Rmu_sc0001103.1_g000038 Rmu_sc0001757.1_g000010 Rmu_sc0004598.1_g000029 Rmu_sc0004849.1_g000001 Rmu_sc0005389.1_g000025 Rmu_sc0005431.1_g000010 Rmu_sc0005431.1_g000020 Rmu_sc0005653.1_g000008 Rmu_sc0008351.1_g000022 Rmu_sc0011701.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054620 Rroxscaffold_1G00054630 Rroxscaffold_1G00054640 Rroxscaffold_5G00340400 Rroxscaffold_5G00340540 Rroxscaffold_5G00340550 Rroxscaffold_5G00340590 Rroxscaffold_5G00340630 Rroxscaffold_5G00340640 Rroxscaffold_5G00340760
rosa_rugosa	Rorug03G0342500 Rorug03G0354500 Rorug03G0355100 Rorug03G0355200 Rorug03G0355300 Rorug03G0356100 Rorug03G0356400 Rorug03G0356500 Rorug05G0084400
rosa_samantha	Rh4AG060000 Rh4AG060900 Rh4AG061200 Rh4BG058600 Rh4BG060300 Rh4BG060500 Rh4BG061200 Rh4BG061400 Rh4BG061700 Rh4BG062000 Rh4BG062100 Rh4BG077000 Rh4CG064400 Rh4CG064600 Rh4CG065900 Rh4CG066000 Rh4CG066300 Rh4CG067400 Rh4CG068000 Rh4CG068300 Rh4CG068400 Rh4CG084600 Rh4DG056100 Rh4DG056200 Rh4DG056600 Rh4DG056800 Rh4DG056900 Rh4DG057000 Rh4DG072000 Rh5BG173500 Rh5CG189600 Rh5CG190000
rosa_wichuraiana	Rw0G006720 Rw0G022980 Rw0G023000 Rw2G038350 Rw4G004810 Rw4G004850 Rw4G004870 Rw4G004880 Rw4G004990 Rw4G005000 Rw4G005080 Rw4G005110 Rw4G005120 Rw4G005130 Rw4G006450 Rw5G015940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AarI	CACCTGC	1 cut(s)	142
Acc36I	ACCTGC	2 cut(s)	59, 142
AccB1I	GGYRCC	1 cut(s)	152
AciI	CCGC	2 cut(s)	161, 419
AclI	AACGTT	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	3 cut(s)	244, 315, 391
AluI	AGCT	3 cut(s)	244, 315, 391
Alw26I	GTCTC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	57, 383
ApeKI	GCWGC	1 cut(s)	374
AspS9I	GGNCC	4 cut(s)	20, 57, 384, 422
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	3 cut(s)	123, 239, 284
AvaII	GGWCC	2 cut(s)	20, 422
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	312
BfuAI	ACCTGC	2 cut(s)	59, 142
BisI	GCNGC	1 cut(s)	375
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	2 cut(s)	321, 429
Bme18I	GGWCC	2 cut(s)	20, 422
BmgT120I	GGNCC	4 cut(s)	20, 57, 384, 422
BmiI	GGNNCC	2 cut(s)	154, 423
BmrFI	CCNGG	2 cut(s)	321, 429
BmrI	ACTGGG	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	353
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	16, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	16, 156
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	59, 385
BshNI	GGYRCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	59, 385
Bsp143I	GATC	1 cut(s)	274
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	161, 419
BspANI	GGCC	2 cut(s)	59, 385
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	154, 423
BspMI	ACCTGC	2 cut(s)	59, 142
BspT107I	GGYRCC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	16, 156
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	272, 368
Bst6I	CTCTTC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	138, 380
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 185
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	319, 427
BstV1I	GCAGC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	59, 385
BveI	ACCTGC	2 cut(s)	59, 142
Cfr13I	GGNCC	4 cut(s)	20, 57, 384, 422
CseI	GACGC	1 cut(s)	194
CviAII	CATG	2 cut(s)	101, 262
CviJI	RGCY	8 cut(s)	59, 70, 97, 142, 244, 315, 385, 391
CviKI_1	RGCY	8 cut(s)	59, 70, 97, 142, 244, 315, 385, 391
DdeI	CTNAG	2 cut(s)	138, 380
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	20, 422
Eco57I	CTGAAG	1 cut(s)	377
EcoO109I	RGGNCCY	2 cut(s)	20, 422
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	2 cut(s)	104, 265
FaiI	YATR	6 cut(s)	102, 225, 248, 263, 282, 372
FatI	CATG	2 cut(s)	100, 261
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	59, 385
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	104, 265
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	2 cut(s)	12, 119
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	3 cut(s)	123, 239, 284
Hpy166II	GTNNAC	2 cut(s)	131, 364
Hpy188I	TCNGA	2 cut(s)	17, 396
Hpy188III	TCNNGA	2 cut(s)	9, 35
Hpy8I	GTNNAC	2 cut(s)	131, 364
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	272, 368
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 185
HpyF3I	CTNAG	2 cut(s)	138, 380
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	104, 265
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	22, 40, 64, 135, 147, 179, 334, 372, 414
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	297
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	3 cut(s)	176, 344, 347
MluCI	AATT	2 cut(s)	44, 436
MnlI	CCTC	7 cut(s)	11, 33, 81, 108, 283, 295, 435
MseI	TTAA	2 cut(s)	201, 435
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	2 cut(s)	321, 429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	114, 185
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	104, 265
NlaIV	GGNNCC	2 cut(s)	154, 423
PaqCI	CACCTGC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	12, 119
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	376
PpuMI	RGGWCCY	2 cut(s)	20, 422
PsiI	TTATAA	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	297
Psp5II	RGGWCCY	2 cut(s)	20, 422
Psp6I	CCWGG	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	154, 423
PspPI	GGNCC	4 cut(s)	20, 57, 384, 422
PspPPI	RGGWCCY	2 cut(s)	20, 422
SaqAI	TTAA	2 cut(s)	201, 435
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	4 cut(s)	20, 57, 384, 422
ScrFI	CCNGG	2 cut(s)	321, 429
SetI	ASST	8 cut(s)	22, 53, 114, 136, 246, 300, 317, 393
SinI	GGWCC	2 cut(s)	20, 422
Sse9I	AATT	2 cut(s)	44, 436
SsiI	CCGC	2 cut(s)	161, 419
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	319, 427
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	272, 368
TaiI	ACGT	1 cut(s)	300
TasI	AATT	2 cut(s)	44, 436
TfiI	GAWTC	2 cut(s)	12, 119
Tru1I	TTAA	2 cut(s)	201, 435
Tru9I	TTAA	2 cut(s)	201, 435
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	135, 345
TspGWI	ACGGA	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	20, 422
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.