Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000286

Physical Location & Seq

Genomic Coordinates Forward (+)

8816544 .. 8818587

Gene Structure 2044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAATGGAACAACTGCACGCAGCAGCTTTAGCATACTATGAACATGGCAGTCCAGAACTTCAGCGTTTAGCATGGTCTTTCTTCGAATCCATGGACACAAACGGTGATAAACGGATCAGCTACTCCGAGTTCAACGACTTTCTGGAACAAAGTGGCCACAGATGGATTCTCAATGACCCAAACTTCTTCAAAAAGCTCGACCGCAACCGCGATGGAGGCCTGGATTTCGAGGAAGTGCTCACTTTCTACTACATCATCAAAACAAGGCGTGTCATGTGCCGAGGGTGCAGCGTCTACCTCTGCGGGTTGTACTTCACCTGCGTAGCGTGCTTTGATGGTGCTGATCAAAACACTTATGATCTTTGTCCTGTTTGCTATCGCAATTTGAATTTCTATCACAATCATTCATACTTCTTGGATAACCATATACTGCTACGGGAAAAAAGATGCACTCCTCCTCCTCCTGCTTCTTGTCCAAGTCCGGCAATGGCTCCACAGCCACAGAGTACTATAGTGGTTTATAACAATTACAACGGTCAACCTGTACCTGAAAAGAAAAAATGGTACCAGTCATTTCATCTATTGGAGGCCGGTCTTGCTGCCGCAGGTTTGGTTACTAATTGTGCTACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032042 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034357 GO:0034641 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIY-YIG MutS_I MutS_V

Protein Analysis

212

Amino Acids

24.48

Weight (kDa)

5.96

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	23 - 85	7.3e-07	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13440 AT4G13440
fragaria_vesca	FvH4_3g15000 FvH4_3g15000 FvH4_3g15020 FvH4_4g04740 FvH4_4g04740 FvH4_4g04740 FvH4_4g04760 FvH4_4g04850 FvH4_4g04860 FvH4_4g04900 FvH4_4g04980 FvH4_4g04980 FvH4_4g04990 FvH4_4g04990
malus_domestica	MD05G1227800.v1.1 MD05G1228500.v1.1
prunus_persica	Prupe.1G049600_v2.0.a1 Prupe.1G049700_v2.0.a1 Prupe.1G049800_v2.0.a1 Prupe.1G050000_v2.0.a1 Prupe.1G050100_v2.0.a1 Prupe.4G134500_v2.0.a1 Prupe.6G152600_v2.0.a1
pyrus_communis	pycom13g19680 pycom13g19690
rosa_chinensis	RchiOBHm_Chr4g0395461 RchiOBHm_Chr4g0395551 RchiOBHm_Chr4g0395571 RchiOBHm_Chr4g0395741 RchiOBHm_Chr4g0395751 RchiOBHm_Chr4g0395781 RchiOBHm_Chr4g0395801 RchiOBHm_Chr4g0397571 RchiOBHm_Chr5g0024631 RchiOBHm_Chr5g0024661
rosa_laevigata	RLG00000009594 RLG00000009595 RLG00000009596 RLG00000009607 RLG00000009608 RLG00000009610 RLG00000009612 RLG00000009621 RLG00000032811
rosa_multiflora	Rmu_co8376147.1_g000001 Rmu_sc0000041.1_g000020 Rmu_sc0001103.1_g000038 Rmu_sc0001757.1_g000010 Rmu_sc0004598.1_g000029 Rmu_sc0004849.1_g000001 Rmu_sc0005389.1_g000025 Rmu_sc0005431.1_g000010 Rmu_sc0005431.1_g000020 Rmu_sc0005653.1_g000008 Rmu_sc0008351.1_g000022 Rmu_sc0011701.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054620 Rroxscaffold_1G00054630 Rroxscaffold_1G00054640 Rroxscaffold_5G00340400 Rroxscaffold_5G00340540 Rroxscaffold_5G00340550 Rroxscaffold_5G00340590 Rroxscaffold_5G00340630 Rroxscaffold_5G00340640 Rroxscaffold_5G00340760
rosa_rugosa	Rorug03G0342500 Rorug03G0354500 Rorug03G0355100 Rorug03G0355200 Rorug03G0355300 Rorug03G0356100 Rorug03G0356400 Rorug03G0356500 Rorug05G0084400
rosa_samantha	Rh4AG060000 Rh4AG060900 Rh4AG061200 Rh4BG058600 Rh4BG060300 Rh4BG060500 Rh4BG061200 Rh4BG061400 Rh4BG061700 Rh4BG062000 Rh4BG062100 Rh4BG077000 Rh4CG064400 Rh4CG064600 Rh4CG065900 Rh4CG066000 Rh4CG066300 Rh4CG067400 Rh4CG068000 Rh4CG068300 Rh4CG068400 Rh4CG084600 Rh4DG056100 Rh4DG056200 Rh4DG056600 Rh4DG056800 Rh4DG056900 Rh4DG057000 Rh4DG072000 Rh5BG173500 Rh5CG189600 Rh5CG190000
rosa_wichuraiana	Rw0G006720 Rw0G022980 Rw0G023000 Rw2G038350 Rw4G004810 Rw4G004850 Rw4G004870 Rw4G004880 Rw4G004990 Rw4G005000 Rw4G005080 Rw4G005110 Rw4G005120 Rw4G005130 Rw4G006450 Rw5G015940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	329, 599
Acc65I	GGTACC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	205, 211, 306, 606
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	4 cut(s)	314, 511, 549, 569
AgsI	TTSAA	3 cut(s)	136, 193, 391
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	3 cut(s)	29, 123, 199
AluI	AGCT	3 cut(s)	29, 123, 199
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	3 cut(s)	157, 220, 591
ApeKI	GCWGC	4 cut(s)	23, 26, 291, 602
ApoI	RAATTY	1 cut(s)	391
Asp718I	GGTACC	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	119, 310
AsuII	TTCGAA	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	35, 38, 303, 589
BccI	CCATC	3 cut(s)	159, 209, 332
BciT130I	CCWGG	1 cut(s)	224
BclI	TGATCA	1 cut(s)	346
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	2 cut(s)	329, 599
BisI	GCNGC	5 cut(s)	24, 27, 292, 603, 606
BlsI	GCNGC	5 cut(s)	25, 28, 293, 604, 607
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	495, 569
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	93, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	93, 283
BseMI	GCAATG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	3 cut(s)	447, 450, 453
BseXI	GCAGC	4 cut(s)	35, 38, 303, 589
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	159, 222, 593
BshNI	GGYRCC	1 cut(s)	567
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	485, 594
BsnI	GGCC	3 cut(s)	159, 222, 593
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	117, 346, 361
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	4 cut(s)	205, 211, 306, 606
BspANI	GGCC	3 cut(s)	159, 222, 593
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	495, 569
BspMI	ACCTGC	2 cut(s)	329, 599
BspPI	GGATC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	93, 283
BssMI	GATC	3 cut(s)	117, 346, 361
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	107, 539
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	21, 331
BstDSI	CCRYGG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	213
BstKTI	GATC	3 cut(s)	120, 349, 364
BstMBI	GATC	3 cut(s)	117, 346, 361
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 219, 288, 330, 599
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	35, 38, 303, 589
BsuRI	GGCC	3 cut(s)	159, 222, 593
BtgI	CCRYGG	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	228
BveI	ACCTGC	2 cut(s)	329, 599
Cac8I	GCNNGC	2 cut(s)	21, 331
Cfr10I	RCCGGY	1 cut(s)	593
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	4 cut(s)	313, 510, 548, 568
CviAII	CATG	4 cut(s)	47, 75, 94, 277
CviJI	RGCY	8 cut(s)	29, 123, 159, 199, 222, 494, 502, 593
CviKI_1	RGCY	8 cut(s)	29, 123, 159, 199, 222, 494, 502, 593
CviQI	GTAC	4 cut(s)	313, 510, 548, 568
DpnI	GATC	3 cut(s)	119, 348, 363
DpnII	GATC	3 cut(s)	117, 346, 361
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	50, 78, 97, 280
FatI	CATG	4 cut(s)	46, 74, 93, 276
FauI	CCCGC	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	5 cut(s)	24, 27, 292, 603, 606
Fsp4HI	GCNGC	5 cut(s)	24, 27, 292, 603, 606
GluI	GCNGC	5 cut(s)	24, 27, 292, 603, 606
HaeIII	GGCC	3 cut(s)	159, 222, 593
HapII	CCGG	2 cut(s)	485, 594
HgaI	GACGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	50, 78, 97, 280
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	2 cut(s)	89, 169
HpaII	CCGG	2 cut(s)	485, 594
HphI	GGTGA	2 cut(s)	119, 310
Hpy166II	GTNNAC	2 cut(s)	298, 542
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	56, 146
Hpy8I	GTNNAC	2 cut(s)	298, 542
HpyCH4III	ACNGT	2 cut(s)	107, 539
HpyCH4V	TGCA	3 cut(s)	19, 291, 453
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 219, 288, 330, 599
Hsp92II	CATG	4 cut(s)	50, 78, 97, 280
KpnI	GGTACC	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	117, 346, 361
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	4 cut(s)	35, 38, 303, 589
LweI	GCATC	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	3 cut(s)	119, 348, 363
MboI	GATC	3 cut(s)	117, 346, 361
MboII	GAAGA	2 cut(s)	76, 181
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	4 cut(s)	385, 391, 529, 622
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	8 cut(s)	212, 226, 278, 311, 468, 471, 474, 583
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	2 cut(s)	485, 594
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	5 cut(s)	32, 219, 288, 330, 599
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	3 cut(s)	117, 346, 361
NlaIII	CATG	4 cut(s)	50, 78, 97, 280
NlaIV	GGNNCC	2 cut(s)	495, 569
NmeAIII	GCCGAG	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	89, 169
PkrI	GCNGC	5 cut(s)	25, 28, 293, 604, 607
PsiI	TTATAA	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	495, 569
RsaI	GTAC	4 cut(s)	314, 511, 549, 569
RsaNI	GTAC	4 cut(s)	313, 510, 548, 568
SatI	GCNGC	5 cut(s)	24, 27, 292, 603, 606
Sau3AI	GATC	3 cut(s)	117, 346, 361
ScaI	AGTACT	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	8 cut(s)	31, 125, 201, 303, 323, 547, 553, 613
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	87
Sse9I	AATT	4 cut(s)	385, 391, 529, 622
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	4 cut(s)	205, 211, 306, 606
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	107, 539
TaqI	TCGA	3 cut(s)	87, 201, 231
TasI	AATT	4 cut(s)	385, 391, 529, 622
TatI	WGTACW	2 cut(s)	312, 509
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	2 cut(s)	89, 169
TseI	GCWGC	4 cut(s)	23, 26, 291, 602
TspDTI	ATGAA	3 cut(s)	57, 399, 569
TspGWI	ACGGA	1 cut(s)	130
XapI	RAATTY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	297
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.