Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000286

Physical Location & Seq

Genomic Coordinates Forward (+)

36250811 .. 36251281

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGAATTACATCGGGCTGCTTTAGCATATTACAACAATGGGGACCGTAATCTTCAGCTACTAGCATCAAACTTCTTCCAATCCATGGACCAGAATGGCGACGGCATAGTCAACCTAGCCGAGTTCGTGACATTTCTCCAGCAAAACGGCTACGGTTGGATTGGCCGTAACTTCTTCTATGATCTGGATCGCAACCTTGTCGGCGGTCTGGATTTCCATGAAGTGCTCACATTTTACTACATAATTAAGACCAGGAACTTGTGGTGCAGGCGATGTGGAGTGTGGCTCACAGGGCTGTATTTTACGTGTGTCGAGTGCTTCGACGGAGCCCCCGATAACTATGATCTATGTTCTGGTTGCTACTCGGGTAGGGGTTTATACACCACCACACCTGCTTCTTGGATAACCATATCCTGCTCAGATCAAAGAGAAGACAAGGTACTGGTCTTCCAAACCTCAATCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

157

Amino Acids

18.02

Weight (kDa)

4.72

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13440 AT4G13440
fragaria_vesca	FvH4_3g15000 FvH4_3g15000 FvH4_3g15020 FvH4_4g04740 FvH4_4g04740 FvH4_4g04740 FvH4_4g04760 FvH4_4g04850 FvH4_4g04860 FvH4_4g04900 FvH4_4g04980 FvH4_4g04980 FvH4_4g04990 FvH4_4g04990
malus_domestica	MD05G1227800.v1.1 MD05G1228500.v1.1
prunus_persica	Prupe.1G049600_v2.0.a1 Prupe.1G049700_v2.0.a1 Prupe.1G049800_v2.0.a1 Prupe.1G050000_v2.0.a1 Prupe.1G050100_v2.0.a1 Prupe.4G134500_v2.0.a1 Prupe.6G152600_v2.0.a1
pyrus_communis	pycom13g19680 pycom13g19690
rosa_chinensis	RchiOBHm_Chr4g0395461 RchiOBHm_Chr4g0395551 RchiOBHm_Chr4g0395571 RchiOBHm_Chr4g0395741 RchiOBHm_Chr4g0395751 RchiOBHm_Chr4g0395781 RchiOBHm_Chr4g0395801 RchiOBHm_Chr4g0397571 RchiOBHm_Chr5g0024631 RchiOBHm_Chr5g0024661
rosa_laevigata	RLG00000009594 RLG00000009595 RLG00000009596 RLG00000009607 RLG00000009608 RLG00000009610 RLG00000009612 RLG00000009621 RLG00000032811
rosa_multiflora	Rmu_co8376147.1_g000001 Rmu_sc0000041.1_g000020 Rmu_sc0001103.1_g000038 Rmu_sc0001757.1_g000010 Rmu_sc0004598.1_g000029 Rmu_sc0004849.1_g000001 Rmu_sc0005389.1_g000025 Rmu_sc0005431.1_g000010 Rmu_sc0005431.1_g000020 Rmu_sc0005653.1_g000008 Rmu_sc0008351.1_g000022 Rmu_sc0011701.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054620 Rroxscaffold_1G00054630 Rroxscaffold_1G00054640 Rroxscaffold_5G00340400 Rroxscaffold_5G00340540 Rroxscaffold_5G00340550 Rroxscaffold_5G00340590 Rroxscaffold_5G00340630 Rroxscaffold_5G00340640 Rroxscaffold_5G00340760
rosa_rugosa	Rorug03G0342500 Rorug03G0354500 Rorug03G0355100 Rorug03G0355200 Rorug03G0355300 Rorug03G0356100 Rorug03G0356400 Rorug03G0356500 Rorug05G0084400
rosa_samantha	Rh4AG060000 Rh4AG060900 Rh4AG061200 Rh4BG058600 Rh4BG060300 Rh4BG060500 Rh4BG061200 Rh4BG061400 Rh4BG061700 Rh4BG062000 Rh4BG062100 Rh4BG077000 Rh4CG064400 Rh4CG064600 Rh4CG065900 Rh4CG066000 Rh4CG066300 Rh4CG067400 Rh4CG068000 Rh4CG068300 Rh4CG068400 Rh4CG084600 Rh4DG056100 Rh4DG056200 Rh4DG056600 Rh4DG056800 Rh4DG056900 Rh4DG057000 Rh4DG072000 Rh5BG173500 Rh5CG189600 Rh5CG190000
rosa_wichuraiana	Rw0G006720 Rw0G022980 Rw0G023000 Rw2G038350 Rw4G004810 Rw4G004850 Rw4G004870 Rw4G004880 Rw4G004990 Rw4G005000 Rw4G005080 Rw4G005110 Rw4G005120 Rw4G005130 Rw4G006450 Rw5G015940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	403
AccB7I	CCANNNNNTGG	1 cut(s)	88
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	2 cut(s)	88, 465
AflIII	ACRYGT	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	46, 91
AvaI	CYCGRG	1 cut(s)	367
AvaII	GGWCC	2 cut(s)	46, 91
BanII	GRGCYC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BbsI	GAAGAC	2 cut(s)	441, 442
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	7
BceAI	ACGGC	3 cut(s)	121, 153, 166
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	256
BfaI	CTAG	2 cut(s)	65, 119
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	2 cut(s)	46, 91
BmeT110I	CYCGRG	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	46, 91
BmiI	GGNNCC	2 cut(s)	47, 331
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	441, 442
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 465
Bse1I	ACTGG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	88, 465
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	7
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	88, 465
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	231, 334
Bsp143I	GATC	4 cut(s)	184, 190, 346, 424
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	434
BspLI	GGNNCC	2 cut(s)	47, 331
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	4 cut(s)	184, 190, 346, 424
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	50, 158
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	187, 193, 349, 427
BstMBI	GATC	4 cut(s)	184, 190, 346, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 295
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	2 cut(s)	441, 442
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	46, 91
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	2 cut(s)	88, 221
CviJI	RGCY	8 cut(s)	20, 61, 122, 153, 168, 289, 298, 332
CviKI_1	RGCY	8 cut(s)	20, 61, 122, 153, 168, 289, 298, 332
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	4 cut(s)	186, 192, 348, 426
DpnII	GATC	4 cut(s)	184, 190, 346, 424
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	46, 91
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	91, 224
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	87, 220
Fnu4HI	GCNGC	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	65, 119
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	91, 224
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	3 cut(s)	130, 188, 212
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	107, 329
HpyCH4III	ACNGT	2 cut(s)	50, 158
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 295
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	91, 224
Kzo9I	GATC	4 cut(s)	184, 190, 346, 424
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	2 cut(s)	65, 119
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	130, 170
MalI	GATC	4 cut(s)	186, 192, 348, 426
MboI	GATC	4 cut(s)	184, 190, 346, 424
MboII	GAAGA	5 cut(s)	47, 70, 169, 442, 446
MhlI	GDGCHC	2 cut(s)	231, 334
MluCI	AATT	2 cut(s)	8, 246
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	1 cut(s)	469
MseI	TTAA	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	26, 295
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	4 cut(s)	184, 190, 346, 424
NlaIII	CATG	2 cut(s)	91, 224
NlaIV	GGNNCC	2 cut(s)	47, 331
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 333
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	47, 331
PspPI	GGNCC	2 cut(s)	46, 91
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	4 cut(s)	184, 190, 346, 424
Sau96I	GGNCC	2 cut(s)	46, 91
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	231, 334
SetI	ASST	7 cut(s)	63, 120, 201, 311, 397, 444, 461
SfaNI	GCATC	1 cut(s)	77
SinI	GGWCC	2 cut(s)	46, 91
Sse9I	AATT	2 cut(s)	8, 246
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	2 cut(s)	65, 119
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	50, 158
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	315, 324
TasI	AATT	2 cut(s)	8, 246
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	46, 91
XspI	CTAG	2 cut(s)	65, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.