Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000286

Physical Location & Seq

Genomic Coordinates Forward (+)

36197240 .. 36198401

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1227800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGGAATTACATCGAGCTGCTTTAGCATATTACAACAATGGGGACCCTAATCTTCGGCTACTAGCATCAAACTTCTTCCAATCCATGGACAGGAATGGCGACGACATAGTCAACCTAGCCGAGTTCGTGATGAAGAGACCCGGTGTAATTATAAGACCGCTCGAGTTTGAGGAGGTGAATCCTCAAGGAAAAGTAGAGGATCACAAACAGAGTGGAAAGAAACAGAAACAGAAAAAGAGGAATAAGAGTAACAAGAGTAAAAGCGGTAGTGACAGAATTGTGACAAAGTTTGGTAGAAACTGTATCAGCTATGTATTAAAGCCATTTAACTTATCCGACTTTGCACCAAACGCCCGACTAATGGAGTTAGTACTATCCGACGACTATTTATCTTATCCAACTGAAATAGTCAGTACAGTCCGAAGTACCAAACGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.8

Weight (kDa)

9.57

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13440 AT4G13440
fragaria_vesca	FvH4_3g15000 FvH4_3g15000 FvH4_3g15020 FvH4_4g04740 FvH4_4g04740 FvH4_4g04740 FvH4_4g04760 FvH4_4g04850 FvH4_4g04860 FvH4_4g04900 FvH4_4g04980 FvH4_4g04980 FvH4_4g04990 FvH4_4g04990
malus_domestica	MD05G1227800.v1.1 MD05G1228500.v1.1
prunus_persica	Prupe.1G049600_v2.0.a1 Prupe.1G049700_v2.0.a1 Prupe.1G049800_v2.0.a1 Prupe.1G050000_v2.0.a1 Prupe.1G050100_v2.0.a1 Prupe.4G134500_v2.0.a1 Prupe.6G152600_v2.0.a1
pyrus_communis	pycom13g19680 pycom13g19690
rosa_chinensis	RchiOBHm_Chr4g0395461 RchiOBHm_Chr4g0395551 RchiOBHm_Chr4g0395571 RchiOBHm_Chr4g0395741 RchiOBHm_Chr4g0395751 RchiOBHm_Chr4g0395781 RchiOBHm_Chr4g0395801 RchiOBHm_Chr4g0397571 RchiOBHm_Chr5g0024631 RchiOBHm_Chr5g0024661
rosa_laevigata	RLG00000009594 RLG00000009595 RLG00000009596 RLG00000009607 RLG00000009608 RLG00000009610 RLG00000009612 RLG00000009621 RLG00000032811
rosa_multiflora	Rmu_co8376147.1_g000001 Rmu_sc0000041.1_g000020 Rmu_sc0001103.1_g000038 Rmu_sc0001757.1_g000010 Rmu_sc0004598.1_g000029 Rmu_sc0004849.1_g000001 Rmu_sc0005389.1_g000025 Rmu_sc0005431.1_g000010 Rmu_sc0005431.1_g000020 Rmu_sc0005653.1_g000008 Rmu_sc0008351.1_g000022 Rmu_sc0011701.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054620 Rroxscaffold_1G00054630 Rroxscaffold_1G00054640 Rroxscaffold_5G00340400 Rroxscaffold_5G00340540 Rroxscaffold_5G00340550 Rroxscaffold_5G00340590 Rroxscaffold_5G00340630 Rroxscaffold_5G00340640 Rroxscaffold_5G00340760
rosa_rugosa	Rorug03G0342500 Rorug03G0354500 Rorug03G0355100 Rorug03G0355200 Rorug03G0355300 Rorug03G0356100 Rorug03G0356400 Rorug03G0356500 Rorug05G0084400
rosa_samantha	Rh4AG060000 Rh4AG060900 Rh4AG061200 Rh4BG058600 Rh4BG060300 Rh4BG060500 Rh4BG061200 Rh4BG061400 Rh4BG061700 Rh4BG062000 Rh4BG062100 Rh4BG077000 Rh4CG064400 Rh4CG064600 Rh4CG065900 Rh4CG066000 Rh4CG066300 Rh4CG067400 Rh4CG068000 Rh4CG068300 Rh4CG068400 Rh4CG084600 Rh4DG056100 Rh4DG056200 Rh4DG056600 Rh4DG056800 Rh4DG056900 Rh4DG057000 Rh4DG072000 Rh5BG173500 Rh5CG189600 Rh5CG190000
rosa_wichuraiana	Rw0G006720 Rw0G022980 Rw0G023000 Rw2G038350 Rw4G004810 Rw4G004850 Rw4G004870 Rw4G004880 Rw4G004990 Rw4G005000 Rw4G005080 Rw4G005110 Rw4G005120 Rw4G005130 Rw4G006450 Rw5G015940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AasI	GACNNNNNNGTC	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	163
AciI	CCGC	2 cut(s)	161, 267
AclWI	GGATC	1 cut(s)	210
AfaI	GTAC	3 cut(s)	375, 418, 430
AfiI	CCNNNNNNNGG	3 cut(s)	88, 93, 364
AluBI	AGCT	2 cut(s)	20, 312
AluI	AGCT	2 cut(s)	20, 312
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	2 cut(s)	65, 119
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	47, 48
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 93, 364
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	3 cut(s)	88, 93, 364
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	88, 93, 364
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	202
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	2 cut(s)	161, 267
BspLI	GGNNCC	2 cut(s)	47, 48
BspPI	GGATC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	305, 421
Bst6I	CTCTTC	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 353
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	374, 417, 429
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	20, 61, 122, 312, 325, 441
CviKI_1	RGCY	6 cut(s)	20, 61, 122, 312, 325, 441
CviQI	GTAC	3 cut(s)	374, 417, 429
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	91
FaiI	YATR	5 cut(s)	31, 89, 110, 155, 315
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	65, 119
GluI	GCNGC	1 cut(s)	21
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	340, 382, 425
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	107, 386
HpyCH4III	ACNGT	2 cut(s)	305, 421
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 353
Hsp92II	CATG	1 cut(s)	91
KflI	GGGWCCC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	2 cut(s)	79, 157
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	2 cut(s)	65, 119
MaeIII	GTNAC	3 cut(s)	251, 272, 283
MalI	GATC	1 cut(s)	204
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	47, 70, 148
MluCI	AATT	3 cut(s)	8, 150, 279
MmeI	TCCRAC	3 cut(s)	363, 405, 425
MnlI	CCTC	6 cut(s)	166, 169, 193, 195, 234, 431
MseI	TTAA	2 cut(s)	320, 330
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	26, 353
NciI	CCSGG	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	47, 48
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	272, 283
PaeR7I	CTCGAG	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	47, 48
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PspXI	VCTCGAGB	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	3 cut(s)	375, 418, 430
RsaNI	GTAC	3 cut(s)	374, 417, 429
SaqAI	TTAA	2 cut(s)	320, 330
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	4 cut(s)	22, 120, 180, 314
SfaNI	GCATC	1 cut(s)	77
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	164, 186
SmoI	CTYRAG	2 cut(s)	164, 186
Sse9I	AATT	3 cut(s)	8, 150, 279
SsiI	CCGC	2 cut(s)	161, 267
SspMI	CTAG	2 cut(s)	65, 119
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	305, 421
TaqI	TCGA	2 cut(s)	16, 165
TasI	AATT	3 cut(s)	8, 150, 279
TatI	WGTACW	2 cut(s)	373, 416
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	320, 330
Tru9I	TTAA	2 cut(s)	320, 330
TseFI	GTSAC	2 cut(s)	272, 283
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	2 cut(s)	272, 283
TspDTI	ATGAA	1 cut(s)	149
Tth111I	GACNNNGTC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	164
XspI	CTAG	2 cut(s)	65, 119
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.